Wall clock time and date at job start Mon Mar 30 2020 06:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29751 * 119.99990 * 2 1 4 4 N 1.40101 * 119.99931 * 0.02562 * 3 2 1 5 5 C 1.46505 * 119.99522 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.46978 * 30.00898 * 5 4 3 7 7 C 1.52995 * 109.47389 * 270.00149 * 5 4 3 8 8 C 1.50701 * 109.46493 * 150.00082 * 5 4 3 9 9 H 1.07999 * 120.00289 * 35.01498 * 8 5 4 10 10 C 1.37884 * 119.99902 * 215.00865 * 8 5 4 11 11 N 1.31508 * 119.99667 * 184.70621 * 10 8 5 12 12 Si 1.86803 * 119.99746 * 4.71042 * 10 8 5 13 13 H 1.48496 * 109.47119 * 84.67215 * 12 10 8 14 14 H 1.48499 * 109.46603 * 204.67077 * 12 10 8 15 15 H 1.48492 * 109.47236 * 324.66765 * 12 10 8 16 16 C 1.47470 * 119.99858 * 180.02562 * 2 1 3 17 17 C 1.39748 * 120.07951 * 114.36102 * 16 2 1 18 18 C 1.37760 * 119.91576 * 180.02562 * 17 16 2 19 19 C 1.39070 * 120.08271 * 0.02562 * 18 17 16 20 20 N 1.39587 * 119.92190 * 179.97438 * 19 18 17 21 21 C 1.39033 * 120.16299 * 359.97438 * 19 18 17 22 22 C 1.37808 * 120.07897 * 359.76520 * 21 19 18 23 23 C 1.50698 * 120.04017 * 180.28174 * 22 21 19 24 24 H 1.09000 * 109.47308 * 89.99185 * 1 2 3 25 25 H 1.09003 * 109.47054 * 210.00187 * 1 2 3 26 26 H 1.09006 * 109.46815 * 329.99585 * 1 2 3 27 27 H 0.96996 * 120.00293 * 0.02562 * 4 3 2 28 28 H 1.09007 * 109.47284 * 55.10012 * 7 5 4 29 29 H 1.09001 * 109.46980 * 295.10193 * 7 5 4 30 30 H 1.09003 * 109.47214 * 175.09997 * 7 5 4 31 31 H 0.97000 * 119.99685 * 180.02562 * 11 10 8 32 32 H 1.08000 * 120.04282 * 0.02625 * 17 16 2 33 33 H 1.08001 * 119.95760 * 179.97438 * 18 17 16 34 34 H 0.97005 * 119.99878 * 0.02562 * 20 19 18 35 35 H 0.96996 * 120.00716 * 180.02562 * 20 19 18 36 36 H 1.08005 * 119.95979 * 180.02562 * 21 19 18 37 37 H 1.09002 * 109.46829 * 274.48571 * 23 22 21 38 38 H 1.08994 * 109.47703 * 34.48171 * 23 22 21 39 39 H 1.09002 * 109.47239 * 154.48655 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1558 1.1237 0.0000 4 7 1.4553 2.3370 0.0005 5 6 2.1879 3.6057 0.0011 6 1 3.1402 3.4755 -0.5129 7 6 2.4430 4.0467 1.4437 8 6 1.3734 4.6562 -0.7088 9 1 0.2965 4.6518 -0.6263 10 6 2.0030 5.6232 -1.4637 11 7 1.3011 6.5935 -2.0071 12 14 3.8528 5.5547 -1.7146 13 1 4.1649 4.6545 -2.8537 14 1 4.3634 6.9181 -2.0068 15 1 4.5006 5.0370 -0.4827 16 6 2.2443 -1.2771 -0.0006 17 6 3.0265 -1.6338 -1.1023 18 6 3.7135 -2.8280 -1.0995 19 6 3.6288 -3.6782 -0.0023 20 7 4.3259 -4.8876 -0.0032 21 6 2.8516 -3.3267 1.0956 22 6 2.1660 -2.1313 1.1021 23 6 1.3289 -1.7483 2.2953 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 0.4853 2.3370 0.0013 28 1 2.9563 3.2498 1.9820 29 1 1.4921 4.2608 1.9317 30 1 3.0623 4.9437 1.4453 31 1 1.7439 7.2735 -2.5385 32 1 3.0924 -0.9742 -1.9550 33 1 4.3178 -3.1045 -1.9508 34 1 4.8688 -5.1339 -0.7685 35 1 4.2674 -5.4818 0.7612 36 1 2.7886 -3.9893 1.9462 37 1 0.3361 -2.1878 2.1987 38 1 1.8025 -2.1172 3.2050 39 1 1.2424 -0.6629 2.3451 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758120021.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:09 Heat of formation + Delta-G solvation = 54.026304 kcal Electronic energy + Delta-G solvation = -18995.085195 eV Core-core repulsion = 16130.784553 eV Total energy + Delta-G solvation = -2864.300642 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.45932 -36.95946 -35.10667 -33.73005 -32.20677 -31.79383 -29.58679 -27.90095 -27.24921 -26.22691 -25.15558 -22.49852 -21.40065 -20.13130 -19.03671 -17.24710 -16.91860 -16.51474 -15.90959 -14.97470 -14.61335 -14.53651 -13.86591 -13.64973 -13.39381 -13.08112 -12.94668 -12.59433 -12.53592 -12.41994 -12.22009 -12.02284 -11.76344 -11.17147 -11.01449 -10.91610 -10.78796 -10.64742 -10.35804 -10.03649 -9.84255 -9.37838 -9.07431 -8.64760 -8.60542 -7.47081 -6.77642 -6.19652 -4.21940 1.56669 1.64445 2.93959 3.27351 3.34789 3.39305 3.78631 3.84188 4.11553 4.34539 4.95901 5.06256 5.10984 5.22440 5.36648 5.54800 5.63987 5.68312 5.70835 5.89336 5.94762 5.98333 6.03368 6.26792 6.31602 6.37768 6.42107 6.57253 6.71534 6.76387 6.88046 6.95329 7.00162 7.20905 7.35792 7.48776 7.62056 7.66966 8.19909 8.47272 8.83387 9.39864 9.43861 10.92638 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.027398 B = 0.004468 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.710340 B = 6264.952228 C = 6733.790269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.032 3.968 3 N -0.206 5.206 4 N -0.630 5.630 5 C 0.266 3.734 6 H 0.041 0.959 7 C -0.151 4.151 8 C -0.525 4.525 9 H 0.076 0.924 10 C 0.080 3.920 11 N -0.891 5.891 12 Si 0.878 3.122 13 H -0.273 1.273 14 H -0.287 1.287 15 H -0.262 1.262 16 C -0.058 4.058 17 C -0.046 4.046 18 C -0.203 4.203 19 C 0.212 3.788 20 N -0.883 5.883 21 C -0.201 4.201 22 C -0.023 4.023 23 C -0.115 4.115 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.371 0.629 28 H 0.027 0.973 29 H 0.044 0.956 30 H 0.049 0.951 31 H 0.267 0.733 32 H 0.122 0.878 33 H 0.117 0.883 34 H 0.395 0.605 35 H 0.395 0.605 36 H 0.116 0.884 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.930 -20.997 5.261 21.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.160 4.160 3 N -0.018 5.018 4 N -0.368 5.368 5 C 0.163 3.837 6 H 0.059 0.941 7 C -0.210 4.210 8 C -0.564 4.564 9 H 0.094 0.906 10 C -0.124 4.124 11 N -0.528 5.528 12 Si 0.705 3.295 13 H -0.199 1.199 14 H -0.213 1.213 15 H -0.186 1.186 16 C -0.062 4.062 17 C -0.066 4.066 18 C -0.226 4.226 19 C 0.108 3.892 20 N -0.422 5.422 21 C -0.223 4.223 22 C -0.025 4.025 23 C -0.171 4.171 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.210 0.790 28 H 0.046 0.954 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.140 0.860 33 H 0.135 0.865 34 H 0.223 0.777 35 H 0.222 0.778 36 H 0.134 0.866 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.931 -20.145 5.146 21.160 hybrid contribution -0.041 -0.419 -0.301 0.517 sum 3.889 -20.564 4.846 21.482 Atomic orbital electron populations 1.21024 0.93459 1.02222 1.02209 1.22190 0.92506 0.90814 1.10464 1.74227 1.28349 0.93011 1.06165 1.49059 1.06148 0.99718 1.81884 1.18829 0.93150 0.79163 0.92536 0.94114 1.22345 1.00095 0.99217 0.99358 1.21059 0.95344 1.09770 1.30236 0.90613 1.24943 0.98388 0.94856 0.94254 1.69884 1.36274 1.13262 1.33379 0.86844 0.85772 0.77290 0.79597 1.19903 1.21282 1.18631 1.17850 1.00744 0.93065 0.94533 1.21055 0.93436 0.94726 0.97358 1.20435 1.06924 0.96565 0.98677 1.17776 0.91307 0.86294 0.93832 1.42415 1.55694 1.20709 1.23378 1.20240 1.04364 0.98959 0.98786 1.19666 0.95641 0.92741 0.94448 1.20828 0.98674 1.02667 0.94963 0.91597 0.91504 0.92082 0.79018 0.95428 0.93638 0.93178 0.92294 0.85976 0.86540 0.77702 0.77780 0.86552 0.91220 0.91924 0.90980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.91 9.04 36.01 0.33 -1.59 16 2 C 0.03 0.55 5.21 -79.71 -0.42 0.13 16 3 N -0.21 -4.27 11.48 35.11 0.40 -3.87 16 4 N -0.63 -13.95 5.95 -5.88 -0.03 -13.98 16 5 C 0.27 6.53 2.89 -69.08 -0.20 6.33 16 6 H 0.04 1.05 5.31 -51.93 -0.28 0.78 16 7 C -0.15 -3.37 9.50 37.15 0.35 -3.01 16 8 C -0.52 -14.57 9.08 -34.44 -0.31 -14.89 16 9 H 0.08 2.25 8.06 -52.49 -0.42 1.82 16 10 C 0.08 2.26 5.47 -17.82 -0.10 2.17 16 11 N -0.89 -26.68 13.96 55.43 0.77 -25.90 16 12 Si 0.88 21.62 26.98 -169.99 -4.59 17.03 16 13 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.26 -6.23 6.83 56.52 0.39 -5.85 16 16 C -0.06 -0.89 5.53 -105.02 -0.58 -1.48 16 17 C -0.05 -0.67 9.78 -39.19 -0.38 -1.06 16 18 C -0.20 -2.54 9.87 -39.45 -0.39 -2.93 16 19 C 0.21 2.41 6.76 -83.72 -0.57 1.85 16 20 N -0.88 -6.90 9.08 32.45 0.29 -6.61 16 21 C -0.20 -2.37 9.54 -39.44 -0.38 -2.75 16 22 C -0.02 -0.31 5.88 -104.23 -0.61 -0.92 16 23 C -0.11 -1.32 8.63 36.00 0.31 -1.01 16 24 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 25 H 0.07 0.83 6.80 -51.93 -0.35 0.48 16 26 H 0.06 0.92 6.35 -51.93 -0.33 0.59 16 27 H 0.37 7.80 6.38 -182.60 -1.16 6.64 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 33 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.40 2.43 8.84 -40.82 -0.36 2.07 16 35 H 0.39 2.34 8.84 -40.82 -0.36 1.98 16 36 H 0.12 1.12 8.06 -52.48 -0.42 0.69 16 37 H 0.07 0.69 7.82 -51.93 -0.41 0.28 16 38 H 0.06 0.62 8.11 -51.93 -0.42 0.20 16 39 H 0.07 0.96 6.73 -51.93 -0.35 0.61 16 LS Contribution 323.96 15.07 4.88 4.88 Total: -1.00 -31.12 323.96 -7.77 -38.89 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -6.55 Total: 8.70 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: -2.95 Total: -19.14 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: 1.44 Total: -50.36 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.59 Total: 17.03 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.12 -7.77 -38.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758120021.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.913 kcal (2) G-P(sol) polarization free energy of solvation -31.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds