Wall clock time and date at job start Mon Mar 30 2020 06:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29751 * 119.99990 * 2 1 4 4 N 1.40101 * 119.99931 * 0.02562 * 3 2 1 5 5 C 1.46505 * 119.99522 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.46978 * 30.00898 * 5 4 3 7 7 C 1.52995 * 109.47389 * 270.00149 * 5 4 3 8 8 C 1.50701 * 109.46493 * 150.00082 * 5 4 3 9 9 H 1.07999 * 120.00289 * 35.01498 * 8 5 4 10 10 C 1.37884 * 119.99902 * 215.00865 * 8 5 4 11 11 N 1.31508 * 119.99667 * 184.70621 * 10 8 5 12 12 Si 1.86803 * 119.99746 * 4.71042 * 10 8 5 13 13 H 1.48496 * 109.47119 * 84.67215 * 12 10 8 14 14 H 1.48499 * 109.46603 * 204.67077 * 12 10 8 15 15 H 1.48492 * 109.47236 * 324.66765 * 12 10 8 16 16 C 1.47470 * 119.99858 * 180.02562 * 2 1 3 17 17 C 1.39748 * 120.07951 * 114.36102 * 16 2 1 18 18 C 1.37760 * 119.91576 * 180.02562 * 17 16 2 19 19 C 1.39070 * 120.08271 * 0.02562 * 18 17 16 20 20 N 1.39587 * 119.92190 * 179.97438 * 19 18 17 21 21 C 1.39033 * 120.16299 * 359.97438 * 19 18 17 22 22 C 1.37808 * 120.07897 * 359.76520 * 21 19 18 23 23 C 1.50698 * 120.04017 * 180.28174 * 22 21 19 24 24 H 1.09000 * 109.47308 * 89.99185 * 1 2 3 25 25 H 1.09003 * 109.47054 * 210.00187 * 1 2 3 26 26 H 1.09006 * 109.46815 * 329.99585 * 1 2 3 27 27 H 0.96996 * 120.00293 * 0.02562 * 4 3 2 28 28 H 1.09007 * 109.47284 * 55.10012 * 7 5 4 29 29 H 1.09001 * 109.46980 * 295.10193 * 7 5 4 30 30 H 1.09003 * 109.47214 * 175.09997 * 7 5 4 31 31 H 0.97000 * 119.99685 * 180.02562 * 11 10 8 32 32 H 1.08000 * 120.04282 * 0.02625 * 17 16 2 33 33 H 1.08001 * 119.95760 * 179.97438 * 18 17 16 34 34 H 0.97005 * 119.99878 * 0.02562 * 20 19 18 35 35 H 0.96996 * 120.00716 * 180.02562 * 20 19 18 36 36 H 1.08005 * 119.95979 * 180.02562 * 21 19 18 37 37 H 1.09002 * 109.46829 * 274.48571 * 23 22 21 38 38 H 1.08994 * 109.47703 * 34.48171 * 23 22 21 39 39 H 1.09002 * 109.47239 * 154.48655 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1558 1.1237 0.0000 4 7 1.4553 2.3370 0.0005 5 6 2.1879 3.6057 0.0011 6 1 3.1402 3.4755 -0.5129 7 6 2.4430 4.0467 1.4437 8 6 1.3734 4.6562 -0.7088 9 1 0.2965 4.6518 -0.6263 10 6 2.0030 5.6232 -1.4637 11 7 1.3011 6.5935 -2.0071 12 14 3.8528 5.5547 -1.7146 13 1 4.1649 4.6545 -2.8537 14 1 4.3634 6.9181 -2.0068 15 1 4.5006 5.0370 -0.4827 16 6 2.2443 -1.2771 -0.0006 17 6 3.0265 -1.6338 -1.1023 18 6 3.7135 -2.8280 -1.0995 19 6 3.6288 -3.6782 -0.0023 20 7 4.3259 -4.8876 -0.0032 21 6 2.8516 -3.3267 1.0956 22 6 2.1660 -2.1313 1.1021 23 6 1.3289 -1.7483 2.2953 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 0.4853 2.3370 0.0013 28 1 2.9563 3.2498 1.9820 29 1 1.4921 4.2608 1.9317 30 1 3.0623 4.9437 1.4453 31 1 1.7439 7.2735 -2.5385 32 1 3.0924 -0.9742 -1.9550 33 1 4.3178 -3.1045 -1.9508 34 1 4.8688 -5.1339 -0.7685 35 1 4.2674 -5.4818 0.7612 36 1 2.7886 -3.9893 1.9462 37 1 0.3361 -2.1878 2.1987 38 1 1.8025 -2.1172 3.2050 39 1 1.2424 -0.6629 2.3451 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758120021.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:09 Heat of formation + Delta-G solvation = 33.164083 kcal Electronic energy + Delta-G solvation = -18995.989849 eV Core-core repulsion = 16130.784553 eV Total energy + Delta-G solvation = -2865.205296 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.47118 -38.39933 -36.48419 -35.18535 -33.71647 -33.16544 -30.99133 -28.97578 -28.47522 -27.51683 -27.17068 -23.58033 -22.54738 -21.79656 -20.49113 -19.05645 -17.73062 -17.68045 -17.25798 -16.71352 -16.00080 -15.54110 -15.42378 -14.72844 -14.64561 -14.55074 -14.31284 -14.20140 -13.90406 -13.62967 -13.46662 -13.28292 -12.95320 -12.94609 -12.74180 -12.43647 -12.16634 -11.98205 -11.84857 -11.65015 -11.36310 -11.18236 -10.80901 -10.64740 -9.57488 -8.63897 -8.37816 -8.12968 -6.44286 0.56016 0.61206 1.32164 1.34413 1.45567 1.57258 2.28481 2.32614 2.98475 3.07871 3.09693 3.89918 4.02887 4.11126 4.38087 4.44235 4.46881 4.59637 4.61661 4.70178 4.80223 4.84363 4.89573 4.90644 4.99523 5.06314 5.09770 5.21294 5.32876 5.41347 5.46284 5.51809 5.63110 5.80694 5.93394 6.02846 6.19186 6.56862 6.67659 6.69234 7.09211 7.24358 7.87198 8.78176 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.027398 B = 0.004468 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.710340 B = 6264.952228 C = 6733.790269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.071 3.929 3 N -0.254 5.254 4 N -0.648 5.648 5 C 0.274 3.726 6 H 0.029 0.971 7 C -0.142 4.142 8 C -0.528 4.528 9 H 0.042 0.958 10 C 0.027 3.973 11 N -0.936 5.936 12 Si 0.939 3.061 13 H -0.274 1.274 14 H -0.277 1.277 15 H -0.248 1.248 16 C -0.098 4.098 17 C -0.060 4.060 18 C -0.211 4.211 19 C 0.221 3.779 20 N -0.866 5.866 21 C -0.204 4.204 22 C -0.023 4.023 23 C -0.114 4.114 24 H 0.069 0.931 25 H 0.094 0.906 26 H 0.055 0.945 27 H 0.371 0.629 28 H 0.040 0.960 29 H 0.045 0.955 30 H 0.049 0.951 31 H 0.270 0.730 32 H 0.108 0.892 33 H 0.134 0.866 34 H 0.406 0.594 35 H 0.408 0.592 36 H 0.144 0.856 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.330 -24.313 6.373 25.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.122 4.122 3 N -0.063 5.063 4 N -0.386 5.386 5 C 0.169 3.831 6 H 0.047 0.953 7 C -0.202 4.202 8 C -0.567 4.567 9 H 0.060 0.940 10 C -0.173 4.173 11 N -0.575 5.575 12 Si 0.762 3.238 13 H -0.199 1.199 14 H -0.203 1.203 15 H -0.172 1.172 16 C -0.103 4.103 17 C -0.080 4.080 18 C -0.234 4.234 19 C 0.115 3.885 20 N -0.406 5.406 21 C -0.227 4.227 22 C -0.025 4.025 23 C -0.170 4.170 24 H 0.087 0.913 25 H 0.113 0.887 26 H 0.073 0.927 27 H 0.210 0.790 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.126 0.874 33 H 0.152 0.848 34 H 0.235 0.765 35 H 0.237 0.763 36 H 0.162 0.838 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.349 -23.509 6.272 24.913 hybrid contribution -0.535 0.271 -0.632 0.871 sum 4.814 -23.238 5.640 24.393 Atomic orbital electron populations 1.21109 0.92016 1.03297 1.02727 1.22846 0.93921 0.90736 1.04691 1.74262 1.28690 0.93113 1.10203 1.48560 1.05788 0.99877 1.84374 1.18545 0.91946 0.79507 0.93054 0.95345 1.22217 1.00301 0.99507 0.98149 1.21261 0.94162 1.10897 1.30379 0.94019 1.25726 1.02988 0.94428 0.94112 1.70004 1.38297 1.14359 1.34841 0.85879 0.80370 0.77611 0.79892 1.19928 1.20284 1.17163 1.17935 1.02980 0.92975 0.96368 1.21036 0.94190 0.95736 0.97011 1.20593 1.06908 0.96020 0.99893 1.17889 0.90589 0.86919 0.93106 1.42410 1.54438 1.19413 1.24298 1.20522 1.03694 0.98708 0.99741 1.19849 0.95728 0.92839 0.94094 1.20859 0.99722 1.01340 0.95112 0.91255 0.88681 0.92653 0.79030 0.94075 0.93549 0.93208 0.92038 0.87410 0.84766 0.76459 0.76261 0.83805 0.89306 0.90009 0.93206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.82 9.04 71.24 0.64 -3.17 16 2 C 0.07 2.42 5.21 45.30 0.24 2.65 16 3 N -0.25 -10.64 11.48 -42.83 -0.49 -11.13 16 4 N -0.65 -29.42 5.95 -172.52 -1.03 -30.45 16 5 C 0.27 13.67 2.89 44.24 0.13 13.80 16 6 H 0.03 1.48 5.31 -2.39 -0.01 1.47 16 7 C -0.14 -6.35 9.50 71.98 0.68 -5.67 16 8 C -0.53 -30.34 9.08 25.60 0.23 -30.11 16 9 H 0.04 2.61 8.06 -2.91 -0.02 2.59 16 10 C 0.03 1.58 5.47 84.66 0.46 2.05 16 11 N -0.94 -57.73 13.96 21.45 0.30 -57.43 16 12 Si 0.94 45.13 26.98 68.60 1.85 46.98 16 13 H -0.27 -13.07 7.11 99.48 0.71 -12.37 16 14 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 15 H -0.25 -11.27 6.83 99.48 0.68 -10.59 16 16 C -0.10 -2.93 5.53 -20.12 -0.11 -3.05 16 17 C -0.06 -1.71 9.78 22.52 0.22 -1.49 16 18 C -0.21 -4.82 9.87 22.36 0.22 -4.60 16 19 C 0.22 4.29 6.76 38.30 0.26 4.55 16 20 N -0.87 -9.96 9.08 -51.25 -0.47 -10.42 16 21 C -0.20 -4.07 9.54 22.36 0.21 -3.85 16 22 C -0.02 -0.56 5.88 -19.61 -0.12 -0.67 16 23 C -0.11 -2.32 8.63 71.24 0.61 -1.71 16 24 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.09 2.18 6.80 -2.39 -0.02 2.16 16 26 H 0.05 1.68 6.35 -2.38 -0.02 1.66 16 27 H 0.37 16.22 6.38 -213.32 -1.36 14.86 16 28 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 29 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 32 H 0.11 3.29 8.06 -2.91 -0.02 3.26 16 33 H 0.13 2.48 8.06 -2.91 -0.02 2.46 16 34 H 0.41 3.36 8.84 -92.70 -0.82 2.54 16 35 H 0.41 2.97 8.84 -92.71 -0.82 2.15 16 36 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 37 H 0.09 1.46 7.82 -2.39 -0.02 1.44 16 38 H 0.08 1.35 8.11 -2.39 -0.02 1.33 16 39 H 0.05 1.24 6.73 -2.39 -0.02 1.23 16 Total: -1.00 -68.93 323.96 1.91 -67.02 By element: Atomic # 1 Polarization: 28.65 SS G_CDS: -1.95 Total: 26.70 kcal Atomic # 6 Polarization: -34.96 SS G_CDS: 3.69 Total: -31.27 kcal Atomic # 7 Polarization: -107.75 SS G_CDS: -1.68 Total: -109.44 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.85 Total: 46.98 kcal Total: -68.93 1.91 -67.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758120021.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.187 kcal (2) G-P(sol) polarization free energy of solvation -68.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds