Wall clock time and date at job start Mon Mar 30 2020 07:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50707 * 109.47188 * 2 1 4 4 C 1.37873 * 120.51386 * 261.21836 * 3 2 1 5 5 N 1.31966 * 120.91920 * 179.97438 * 4 3 2 6 6 C 1.32003 * 122.08946 * 359.97438 * 5 4 3 7 7 C 1.37830 * 120.91510 * 359.71823 * 6 5 4 8 8 C 1.40125 * 120.51061 * 81.19268 * 3 2 1 9 9 C 1.47402 * 120.94550 * 0.02707 * 8 3 2 10 10 C 1.50698 * 120.00543 * 176.12318 * 9 8 3 11 11 N 1.29799 * 119.99231 * 356.12717 * 9 8 3 12 12 N 1.40101 * 119.99566 * 179.97438 * 11 9 8 13 13 C 1.46505 * 120.00046 * 179.97438 * 12 11 9 14 14 H 1.09002 * 109.46728 * 330.00439 * 13 12 11 15 15 C 1.53001 * 109.46987 * 90.00142 * 13 12 11 16 16 C 1.50699 * 109.47184 * 210.00376 * 13 12 11 17 17 H 1.08000 * 119.99988 * 359.97438 * 16 13 12 18 18 C 1.37883 * 119.99876 * 180.02562 * 16 13 12 19 19 N 1.31514 * 119.99807 * 359.97438 * 18 16 13 20 20 Si 1.86796 * 119.99922 * 179.97438 * 18 16 13 21 21 H 1.48506 * 109.47124 * 59.99899 * 20 18 16 22 22 H 1.48496 * 109.47106 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47099 * 299.99661 * 20 18 16 24 24 H 1.09003 * 109.47170 * 300.00004 * 1 2 3 25 25 H 1.09002 * 109.47210 * 59.99961 * 1 2 3 26 26 H 1.08993 * 109.46748 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47444 * 240.00448 * 2 1 3 28 28 H 1.09002 * 109.47210 * 120.00039 * 2 1 3 29 29 H 1.08006 * 119.54133 * 359.97438 * 4 3 2 30 30 H 1.07995 * 119.53974 * 179.97438 * 6 5 4 31 31 H 1.08002 * 120.50890 * 180.30416 * 7 6 5 32 32 H 1.08995 * 109.47291 * 270.00193 * 10 9 8 33 33 H 1.09002 * 109.46877 * 30.00043 * 10 9 8 34 34 H 1.08997 * 109.47205 * 150.00147 * 10 9 8 35 35 H 0.96997 * 120.00556 * 0.02562 * 12 11 9 36 36 H 1.09005 * 109.46905 * 60.00088 * 15 13 12 37 37 H 1.09001 * 109.46890 * 180.02562 * 15 13 12 38 38 H 1.09004 * 109.47244 * 299.99959 * 15 13 12 39 39 H 0.97004 * 119.99748 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.4367 2.0204 -1.1739 5 7 2.8774 3.2643 -1.1832 6 6 2.9526 3.9899 -0.0830 7 6 2.5636 3.4731 1.1341 8 6 2.0952 2.1532 1.1930 9 6 1.6741 1.5550 2.4727 10 6 1.8322 2.3304 3.7552 11 7 1.1671 0.3604 2.4948 12 7 0.7673 -0.2085 3.7111 13 6 0.1946 -1.5567 3.7361 14 1 -0.3249 -1.7482 2.7972 15 6 1.3145 -2.5832 3.9179 16 6 -0.7793 -1.6676 4.8808 17 1 -0.9539 -0.8189 5.5254 18 6 -1.4467 -2.8530 5.1057 19 7 -1.2338 -3.8866 4.3209 20 14 -2.6534 -2.9907 6.5249 21 1 -3.7406 -1.9946 6.3488 22 1 -3.2340 -4.3573 6.5502 23 1 -1.9452 -2.7296 7.8038 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.3921 1.4644 -2.0987 30 1 3.3202 5.0038 -0.1380 31 1 2.6233 4.0742 2.0293 32 1 2.8101 2.1208 4.1883 33 1 1.7478 3.3971 3.5475 34 1 1.0528 2.0342 4.4572 35 1 0.8690 0.2906 4.5366 36 1 1.8340 -2.3916 4.8568 37 1 0.8884 -3.5863 3.9361 38 1 2.0189 -2.5030 3.0899 39 1 -1.7030 -4.7207 4.4793 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000765583880.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:35 Heat of formation + Delta-G solvation = 57.448360 kcal Electronic energy + Delta-G solvation = -19542.385073 eV Core-core repulsion = 16678.232822 eV Total energy + Delta-G solvation = -2864.152251 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.20432 -38.61216 -36.46692 -35.19200 -34.00056 -32.40424 -30.60895 -29.81590 -28.46524 -27.26268 -25.30020 -24.61356 -22.47699 -22.06021 -20.65810 -18.92006 -17.78551 -17.44324 -16.83990 -16.28940 -15.97226 -15.65399 -15.31049 -14.90612 -14.59608 -14.53460 -14.36292 -14.16590 -13.79600 -13.37878 -13.17871 -12.95890 -12.90078 -12.80434 -12.71023 -12.38201 -12.20452 -12.09841 -11.95179 -11.63864 -11.11396 -10.77603 -10.66431 -10.50498 -10.20595 -9.79140 -8.43599 -8.16908 -6.34022 -0.02723 0.30497 1.42874 1.43797 1.51662 1.73122 2.16461 2.46899 3.01145 3.11790 3.60681 3.65366 3.92221 4.02012 4.14855 4.31623 4.44420 4.51528 4.62012 4.63078 4.70321 4.75991 4.85636 4.91624 4.97487 5.02359 5.08837 5.12609 5.18013 5.29942 5.41259 5.48005 5.60430 5.64717 5.81588 5.87757 5.89579 6.19323 6.41704 6.84941 7.11344 7.37401 7.74663 8.86904 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.033186 B = 0.004692 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.531378 B = 5966.225638 C = 6398.735883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.074 4.074 3 C -0.124 4.124 4 C 0.093 3.907 5 N -0.507 5.507 6 C 0.087 3.913 7 C -0.155 4.155 8 C 0.013 3.987 9 C 0.019 3.981 10 C -0.131 4.131 11 N -0.203 5.203 12 N -0.635 5.635 13 C 0.309 3.691 14 H 0.006 0.994 15 C -0.136 4.136 16 C -0.548 4.548 17 H 0.059 0.941 18 C 0.022 3.978 19 N -0.912 5.912 20 Si 0.966 3.034 21 H -0.274 1.274 22 H -0.282 1.282 23 H -0.269 1.269 24 H 0.037 0.963 25 H 0.056 0.944 26 H 0.043 0.957 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.169 0.831 30 H 0.187 0.813 31 H 0.165 0.835 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.055 0.945 35 H 0.374 0.626 36 H 0.028 0.972 37 H 0.068 0.932 38 H 0.018 0.982 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.069 13.000 -5.324 15.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.112 4.112 3 C -0.128 4.128 4 C -0.063 4.063 5 N -0.217 5.217 6 C -0.068 4.068 7 C -0.177 4.177 8 C 0.003 3.997 9 C -0.168 4.168 10 C -0.190 4.190 11 N -0.016 5.016 12 N -0.373 5.373 13 C 0.206 3.794 14 H 0.024 0.976 15 C -0.195 4.195 16 C -0.587 4.587 17 H 0.077 0.923 18 C -0.178 4.178 19 N -0.550 5.550 20 Si 0.791 3.209 21 H -0.199 1.199 22 H -0.207 1.207 23 H -0.194 1.194 24 H 0.057 0.943 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.186 0.814 30 H 0.204 0.796 31 H 0.182 0.818 32 H 0.098 0.902 33 H 0.118 0.882 34 H 0.074 0.926 35 H 0.212 0.788 36 H 0.047 0.953 37 H 0.086 0.914 38 H 0.037 0.963 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.923 12.186 -6.664 15.519 hybrid contribution -0.824 -0.244 2.435 2.582 sum 6.098 11.942 -4.229 14.060 Atomic orbital electron populations 1.21460 0.95209 1.00832 1.00546 1.20519 0.95979 0.91880 1.02828 1.21181 0.99993 0.97884 0.93743 1.22783 0.94828 0.91214 0.97497 1.67681 1.14650 1.07144 1.32254 1.23105 0.95984 1.00646 0.87114 1.22471 1.00063 0.94062 1.01110 1.18770 0.96371 0.94108 0.90431 1.22873 1.05686 0.93104 0.95183 1.21037 1.02454 1.01816 0.93730 1.74516 1.05513 1.10741 1.10867 1.48780 1.68984 1.17502 1.02004 1.18092 0.89589 0.76324 0.95422 0.97648 1.22017 0.97616 1.02540 0.97331 1.21482 1.24704 0.98271 1.14277 0.92271 1.25639 0.98298 0.95020 0.98889 1.70000 1.42821 1.02987 1.39180 0.85499 0.78853 0.77198 0.79386 1.19938 1.20748 1.19355 0.94345 0.92467 0.93783 0.90369 0.90641 0.81351 0.79603 0.81800 0.90155 0.88169 0.92582 0.78759 0.95328 0.91354 0.96315 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.08 9.39 71.98 0.68 -3.41 16 2 C -0.07 -2.29 5.34 29.85 0.16 -2.13 16 3 C -0.12 -3.54 5.19 -19.49 -0.10 -3.64 16 4 C 0.09 2.37 10.82 84.59 0.92 3.28 16 5 N -0.51 -12.74 10.35 -196.24 -2.03 -14.77 16 6 C 0.09 1.78 11.17 84.57 0.94 2.73 16 7 C -0.16 -3.29 9.46 22.64 0.21 -3.07 16 8 C 0.01 0.37 5.90 -19.94 -0.12 0.25 16 9 C 0.02 0.59 7.01 45.27 0.32 0.91 16 10 C -0.13 -3.23 9.15 71.24 0.65 -2.58 16 11 N -0.20 -7.82 5.77 -42.86 -0.25 -8.07 16 12 N -0.63 -27.14 5.95 -172.51 -1.03 -28.17 16 13 C 0.31 15.61 3.23 44.24 0.14 15.76 16 14 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 15 C -0.14 -6.65 9.29 71.98 0.67 -5.98 16 16 C -0.55 -29.11 8.74 25.60 0.22 -28.89 16 17 H 0.06 3.05 7.78 -2.91 -0.02 3.03 16 18 C 0.02 1.18 5.30 84.66 0.45 1.63 16 19 N -0.91 -50.68 11.32 21.45 0.24 -50.44 16 20 Si 0.97 41.91 29.54 68.60 2.03 43.93 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 22 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 23 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 24 H 0.04 1.45 6.52 -2.39 -0.02 1.44 16 25 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.04 1.53 8.14 -2.39 -0.02 1.52 16 27 H 0.08 2.04 8.03 -2.39 -0.02 2.02 16 28 H 0.08 2.79 5.88 -2.39 -0.01 2.77 16 29 H 0.17 3.50 8.05 -2.91 -0.02 3.47 16 30 H 0.19 2.39 8.06 -2.91 -0.02 2.37 16 31 H 0.16 2.41 6.42 -2.91 -0.02 2.39 16 32 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.10 1.82 6.41 -2.39 -0.02 1.80 16 34 H 0.06 1.52 6.35 -2.39 -0.02 1.50 16 35 H 0.37 14.84 6.36 -213.32 -1.36 13.48 16 36 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 37 H 0.07 3.64 6.07 -2.39 -0.01 3.63 16 38 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 Total: -1.00 -60.77 317.32 3.80 -56.97 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: -0.30 Total: 25.68 kcal Atomic # 6 Polarization: -30.29 SS G_CDS: 5.14 Total: -25.14 kcal Atomic # 7 Polarization: -98.38 SS G_CDS: -3.06 Total: -101.44 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.93 kcal Total: -60.77 3.80 -56.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765583880.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.419 kcal (2) G-P(sol) polarization free energy of solvation -60.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds