Wall clock time and date at job start Mon Mar 30 2020 07:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50694 * 109.47611 * 2 1 4 4 C 1.37869 * 120.51358 * 261.28804 * 3 2 1 5 5 N 1.31975 * 120.91744 * 179.97438 * 4 3 2 6 6 C 1.31998 * 122.09065 * 0.02562 * 5 4 3 7 7 C 1.37830 * 120.91914 * 359.73967 * 6 5 4 8 8 C 1.40138 * 120.50940 * 81.26319 * 3 2 1 9 9 C 1.47389 * 120.94366 * 359.97438 * 8 3 2 10 10 C 1.50699 * 120.00243 * 176.05728 * 9 8 3 11 11 N 1.29798 * 119.99686 * 356.06271 * 9 8 3 12 12 N 1.40107 * 119.99800 * 179.97438 * 11 9 8 13 13 C 1.46502 * 120.00080 * 179.97438 * 12 11 9 14 14 H 1.09000 * 109.46873 * 29.99783 * 13 12 11 15 15 C 1.52999 * 109.46992 * 269.99858 * 13 12 11 16 16 C 1.50704 * 109.47237 * 149.99612 * 13 12 11 17 17 H 1.08001 * 119.99933 * 359.97438 * 16 13 12 18 18 C 1.37873 * 119.99870 * 179.97438 * 16 13 12 19 19 N 1.31515 * 119.99980 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 119.99945 * 179.97438 * 18 16 13 21 21 H 1.48494 * 109.47122 * 179.97438 * 20 18 16 22 22 H 1.48497 * 109.47349 * 300.00245 * 20 18 16 23 23 H 1.48502 * 109.46822 * 60.00247 * 20 18 16 24 24 H 1.08996 * 109.46568 * 60.00048 * 1 2 3 25 25 H 1.08995 * 109.47277 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47052 * 300.00243 * 1 2 3 27 27 H 1.09003 * 109.47324 * 239.99731 * 2 1 3 28 28 H 1.09005 * 109.47144 * 120.00053 * 2 1 3 29 29 H 1.07997 * 119.53873 * 359.97438 * 4 3 2 30 30 H 1.07994 * 119.53819 * 179.97438 * 6 5 4 31 31 H 1.07997 * 120.51583 * 180.28653 * 7 6 5 32 32 H 1.09008 * 109.47357 * 270.00264 * 10 9 8 33 33 H 1.08995 * 109.47284 * 30.00090 * 10 9 8 34 34 H 1.08997 * 109.47471 * 150.00499 * 10 9 8 35 35 H 0.97001 * 120.00133 * 359.97438 * 12 11 9 36 36 H 1.09000 * 109.47250 * 299.99694 * 15 13 12 37 37 H 1.08994 * 109.47193 * 59.99939 * 15 13 12 38 38 H 1.09002 * 109.47168 * 179.97438 * 15 13 12 39 39 H 0.96999 * 119.99883 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 6 2.4355 2.0207 -1.1741 5 7 2.8763 3.2646 -1.1833 6 6 2.9538 3.9894 -0.0828 7 6 2.5675 3.4717 1.1348 8 6 2.0968 2.1526 1.1933 9 6 1.6760 1.5543 2.4729 10 6 1.8370 2.3285 3.7558 11 7 1.1669 0.3606 2.4948 12 7 0.7674 -0.2084 3.7113 13 6 0.1922 -1.5556 3.7360 14 1 0.6105 -2.1442 2.9195 15 6 -1.3264 -1.4648 3.5734 16 6 0.5181 -2.2169 5.0503 17 1 1.0963 -1.6869 5.7928 18 6 0.0783 -3.4986 5.3049 19 7 -0.6253 -4.1441 4.4006 20 14 0.4829 -4.3186 6.9338 21 1 -0.1013 -5.6836 6.9593 22 1 1.9569 -4.4074 7.0907 23 1 -0.0859 -3.5164 8.0465 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 2.3897 1.4650 -2.0990 30 1 3.3213 5.0034 -0.1379 31 1 2.6293 4.0720 2.0304 32 1 2.8152 2.1167 4.1877 33 1 1.7544 3.3955 3.5491 34 1 1.0579 2.0332 4.4586 35 1 0.8716 0.2896 4.5371 36 1 -1.7447 -0.8761 4.3899 37 1 -1.5621 -0.9865 2.6228 38 1 -1.7543 -2.4671 3.5914 39 1 -0.9351 -5.0457 4.5798 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000765583881.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:37 Heat of formation + Delta-G solvation = 72.198212 kcal Electronic energy + Delta-G solvation = -19549.150400 eV Core-core repulsion = 16685.637751 eV Total energy + Delta-G solvation = -2863.512649 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.11182 -37.24213 -34.83509 -33.89424 -32.49965 -30.88678 -29.41932 -28.53989 -26.99385 -25.28795 -24.08216 -23.44467 -21.16355 -20.46049 -19.32544 -17.40433 -16.45946 -16.00151 -15.19703 -15.06975 -14.74294 -14.22573 -14.07560 -13.57402 -13.39175 -13.25833 -12.94330 -12.64751 -12.22712 -12.08168 -11.82086 -11.63748 -11.47837 -11.09807 -10.96850 -10.78695 -10.69974 -10.44484 -10.28643 -10.22406 -9.58277 -9.43463 -9.19290 -8.95669 -8.73457 -8.55961 -6.91388 -6.20404 -4.29211 1.12280 1.33862 2.95685 3.20970 3.26322 3.27202 3.66460 4.08125 4.30402 4.59695 4.78286 4.98674 5.11548 5.12387 5.24520 5.41641 5.54401 5.64930 5.73909 5.76245 5.89025 5.93985 6.01044 6.16653 6.20496 6.39263 6.50522 6.67476 6.72479 6.83155 6.87595 6.94558 7.02011 7.07529 7.49219 7.68446 7.77536 8.05537 8.14834 8.20539 8.77128 9.16667 9.37945 10.85244 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.032929 B = 0.004693 C = 0.004347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.110912 B = 5964.748316 C = 6439.858734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.079 4.079 3 C -0.114 4.114 4 C 0.096 3.904 5 N -0.496 5.496 6 C 0.086 3.914 7 C -0.170 4.170 8 C 0.043 3.957 9 C -0.006 4.006 10 C -0.129 4.129 11 N -0.167 5.167 12 N -0.616 5.616 13 C 0.297 3.703 14 H 0.043 0.957 15 C -0.150 4.150 16 C -0.533 4.533 17 H 0.059 0.941 18 C 0.069 3.931 19 N -0.884 5.884 20 Si 0.902 3.098 21 H -0.285 1.285 22 H -0.276 1.276 23 H -0.276 1.276 24 H 0.038 0.962 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.103 0.897 29 H 0.151 0.849 30 H 0.150 0.850 31 H 0.134 0.866 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.371 0.629 36 H 0.025 0.975 37 H 0.014 0.986 38 H 0.090 0.910 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.893 11.447 -5.580 13.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.117 4.117 3 C -0.118 4.118 4 C -0.060 4.060 5 N -0.206 5.206 6 C -0.070 4.070 7 C -0.192 4.192 8 C 0.033 3.967 9 C -0.191 4.191 10 C -0.188 4.188 11 N 0.017 4.983 12 N -0.353 5.353 13 C 0.195 3.805 14 H 0.061 0.939 15 C -0.210 4.210 16 C -0.573 4.573 17 H 0.077 0.923 18 C -0.135 4.135 19 N -0.522 5.522 20 Si 0.730 3.270 21 H -0.210 1.210 22 H -0.202 1.202 23 H -0.202 1.202 24 H 0.057 0.943 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.121 0.879 29 H 0.168 0.832 30 H 0.168 0.832 31 H 0.152 0.848 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.209 0.791 36 H 0.044 0.956 37 H 0.033 0.967 38 H 0.109 0.891 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.698 10.638 -6.920 13.218 hybrid contribution 0.100 -0.017 2.687 2.689 sum 3.799 10.621 -4.233 12.048 Atomic orbital electron populations 1.21566 0.94450 1.01837 1.00943 1.20636 0.96721 0.91068 1.03266 1.21155 0.99454 0.98242 0.92955 1.22525 0.95259 0.90991 0.97240 1.67598 1.14640 1.07115 1.31244 1.22464 0.97240 0.99406 0.87853 1.22146 1.02125 0.95275 0.99650 1.18540 0.94550 0.92606 0.91016 1.22179 1.09583 0.94042 0.93327 1.20932 1.02143 1.00360 0.95391 1.74420 1.02883 1.08983 1.12002 1.49337 1.66511 1.18427 1.01070 1.18575 0.89244 0.75232 0.97481 0.93919 1.22208 0.99377 1.02741 0.96635 1.21175 1.35187 0.99788 1.01131 0.92301 1.24837 0.94610 0.96789 0.97219 1.69870 1.35749 1.12628 1.33944 0.86491 0.78732 0.78486 0.83318 1.21036 1.20165 1.20174 0.94301 0.92384 0.91892 0.92297 0.87946 0.83184 0.83233 0.84844 0.91438 0.91280 0.91781 0.79146 0.95587 0.96717 0.89114 0.92442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 9.39 37.16 0.35 -1.71 16 2 C -0.08 -1.21 5.34 -27.88 -0.15 -1.36 16 3 C -0.11 -1.70 5.19 -104.05 -0.54 -2.24 16 4 C 0.10 1.33 10.82 -17.63 -0.19 1.14 16 5 N -0.50 -7.01 10.35 -13.38 -0.14 -7.15 16 6 C 0.09 1.06 11.17 -17.63 -0.20 0.86 16 7 C -0.17 -2.12 9.46 -39.00 -0.37 -2.49 16 8 C 0.04 0.65 5.91 -104.73 -0.62 0.03 16 9 C -0.01 -0.10 7.01 -79.73 -0.56 -0.66 16 10 C -0.13 -1.73 9.15 36.01 0.33 -1.40 16 11 N -0.17 -3.12 5.77 35.10 0.20 -2.92 16 12 N -0.62 -12.73 5.95 -5.88 -0.03 -12.76 16 13 C 0.30 7.14 3.23 -69.08 -0.22 6.92 16 14 H 0.04 1.14 8.14 -51.93 -0.42 0.72 16 15 C -0.15 -3.52 9.29 37.16 0.35 -3.18 16 16 C -0.53 -13.79 8.74 -34.44 -0.30 -14.09 16 17 H 0.06 1.49 7.79 -52.49 -0.41 1.08 16 18 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 19 N -0.88 -23.87 11.32 55.43 0.63 -23.25 16 20 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 24 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.06 1.12 6.52 -51.93 -0.34 0.78 16 27 H 0.06 0.79 8.03 -51.93 -0.42 0.37 16 28 H 0.10 1.84 5.88 -51.93 -0.31 1.54 16 29 H 0.15 1.73 8.05 -52.49 -0.42 1.31 16 30 H 0.15 1.36 8.06 -52.49 -0.42 0.94 16 31 H 0.13 1.33 6.42 -52.49 -0.34 1.00 16 32 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 33 H 0.07 0.76 6.41 -51.93 -0.33 0.42 16 34 H 0.06 0.89 6.35 -51.93 -0.33 0.56 16 35 H 0.37 7.19 6.36 -182.59 -1.16 6.03 16 36 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.09 2.31 6.07 -51.93 -0.32 2.00 16 39 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 317.33 15.07 4.78 4.78 Total: -1.00 -27.39 317.33 -8.26 -35.65 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -6.46 Total: 6.89 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: -2.22 Total: -16.49 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: 0.66 Total: -46.08 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -27.39 -8.26 -35.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765583881.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.853 kcal (2) G-P(sol) polarization free energy of solvation -27.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds