Wall clock time and date at job start Mon Mar 30 2020 07:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50694 * 109.47611 * 2 1 4 4 C 1.37869 * 120.51358 * 261.28804 * 3 2 1 5 5 N 1.31975 * 120.91744 * 179.97438 * 4 3 2 6 6 C 1.31998 * 122.09065 * 0.02562 * 5 4 3 7 7 C 1.37830 * 120.91914 * 359.73967 * 6 5 4 8 8 C 1.40138 * 120.50940 * 81.26319 * 3 2 1 9 9 C 1.47389 * 120.94366 * 359.97438 * 8 3 2 10 10 C 1.50699 * 120.00243 * 176.05728 * 9 8 3 11 11 N 1.29798 * 119.99686 * 356.06271 * 9 8 3 12 12 N 1.40107 * 119.99800 * 179.97438 * 11 9 8 13 13 C 1.46502 * 120.00080 * 179.97438 * 12 11 9 14 14 H 1.09000 * 109.46873 * 29.99783 * 13 12 11 15 15 C 1.52999 * 109.46992 * 269.99858 * 13 12 11 16 16 C 1.50704 * 109.47237 * 149.99612 * 13 12 11 17 17 H 1.08001 * 119.99933 * 359.97438 * 16 13 12 18 18 C 1.37873 * 119.99870 * 179.97438 * 16 13 12 19 19 N 1.31515 * 119.99980 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 119.99945 * 179.97438 * 18 16 13 21 21 H 1.48494 * 109.47122 * 179.97438 * 20 18 16 22 22 H 1.48497 * 109.47349 * 300.00245 * 20 18 16 23 23 H 1.48502 * 109.46822 * 60.00247 * 20 18 16 24 24 H 1.08996 * 109.46568 * 60.00048 * 1 2 3 25 25 H 1.08995 * 109.47277 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47052 * 300.00243 * 1 2 3 27 27 H 1.09003 * 109.47324 * 239.99731 * 2 1 3 28 28 H 1.09005 * 109.47144 * 120.00053 * 2 1 3 29 29 H 1.07997 * 119.53873 * 359.97438 * 4 3 2 30 30 H 1.07994 * 119.53819 * 179.97438 * 6 5 4 31 31 H 1.07997 * 120.51583 * 180.28653 * 7 6 5 32 32 H 1.09008 * 109.47357 * 270.00264 * 10 9 8 33 33 H 1.08995 * 109.47284 * 30.00090 * 10 9 8 34 34 H 1.08997 * 109.47471 * 150.00499 * 10 9 8 35 35 H 0.97001 * 120.00133 * 359.97438 * 12 11 9 36 36 H 1.09000 * 109.47250 * 299.99694 * 15 13 12 37 37 H 1.08994 * 109.47193 * 59.99939 * 15 13 12 38 38 H 1.09002 * 109.47168 * 179.97438 * 15 13 12 39 39 H 0.96999 * 119.99883 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 6 2.4355 2.0207 -1.1741 5 7 2.8763 3.2646 -1.1833 6 6 2.9538 3.9894 -0.0828 7 6 2.5675 3.4717 1.1348 8 6 2.0968 2.1526 1.1933 9 6 1.6760 1.5543 2.4729 10 6 1.8370 2.3285 3.7558 11 7 1.1669 0.3606 2.4948 12 7 0.7674 -0.2084 3.7113 13 6 0.1922 -1.5556 3.7360 14 1 0.6105 -2.1442 2.9195 15 6 -1.3264 -1.4648 3.5734 16 6 0.5181 -2.2169 5.0503 17 1 1.0963 -1.6869 5.7928 18 6 0.0783 -3.4986 5.3049 19 7 -0.6253 -4.1441 4.4006 20 14 0.4829 -4.3186 6.9338 21 1 -0.1013 -5.6836 6.9593 22 1 1.9569 -4.4074 7.0907 23 1 -0.0859 -3.5164 8.0465 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 2.3897 1.4650 -2.0990 30 1 3.3213 5.0034 -0.1379 31 1 2.6293 4.0720 2.0304 32 1 2.8152 2.1167 4.1877 33 1 1.7544 3.3955 3.5491 34 1 1.0579 2.0332 4.4586 35 1 0.8716 0.2896 4.5371 36 1 -1.7447 -0.8761 4.3899 37 1 -1.5621 -0.9865 2.6228 38 1 -1.7543 -2.4671 3.5914 39 1 -0.9351 -5.0457 4.5798 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000765583881.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:37 Heat of formation + Delta-G solvation = 57.410810 kcal Electronic energy + Delta-G solvation = -19549.791630 eV Core-core repulsion = 16685.637751 eV Total energy + Delta-G solvation = -2864.153879 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.20414 -38.61394 -36.46329 -35.19508 -34.00347 -32.40341 -30.59191 -29.83697 -28.45706 -27.26390 -25.27317 -24.63606 -22.53944 -21.99243 -20.66456 -18.92025 -17.78619 -17.45009 -16.83062 -16.30926 -15.96284 -15.62544 -15.36829 -14.76523 -14.61202 -14.60287 -14.45931 -14.11480 -13.76874 -13.35978 -13.20048 -12.95370 -12.89254 -12.81012 -12.69158 -12.36884 -12.22631 -12.10279 -11.95449 -11.61665 -11.13244 -10.76057 -10.68081 -10.49504 -10.20127 -9.79043 -8.43761 -8.16979 -6.34216 -0.02800 0.30500 1.42931 1.43858 1.51750 1.73009 2.16459 2.46844 3.01079 3.11759 3.60645 3.65308 3.92240 4.01973 4.14759 4.31631 4.44329 4.51815 4.62260 4.63604 4.70491 4.75479 4.85657 4.92015 4.98338 5.02641 5.09039 5.12862 5.18896 5.30141 5.39920 5.48880 5.60592 5.65444 5.81770 5.87644 5.89376 6.19332 6.41645 6.84908 7.11298 7.37347 7.74582 8.86860 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.032929 B = 0.004693 C = 0.004347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.110912 B = 5964.748316 C = 6439.858734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.075 4.075 3 C -0.123 4.123 4 C 0.093 3.907 5 N -0.507 5.507 6 C 0.087 3.913 7 C -0.155 4.155 8 C 0.013 3.987 9 C 0.019 3.981 10 C -0.131 4.131 11 N -0.203 5.203 12 N -0.635 5.635 13 C 0.311 3.689 14 H 0.004 0.996 15 C -0.135 4.135 16 C -0.549 4.549 17 H 0.059 0.941 18 C 0.022 3.978 19 N -0.912 5.912 20 Si 0.966 3.034 21 H -0.282 1.282 22 H -0.274 1.274 23 H -0.269 1.269 24 H 0.057 0.943 25 H 0.044 0.956 26 H 0.040 0.960 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.169 0.831 30 H 0.187 0.813 31 H 0.165 0.835 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.057 0.943 35 H 0.374 0.626 36 H 0.026 0.974 37 H 0.019 0.981 38 H 0.067 0.933 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.067 13.852 -5.573 15.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.113 4.113 3 C -0.128 4.128 4 C -0.063 4.063 5 N -0.217 5.217 6 C -0.069 4.069 7 C -0.177 4.177 8 C 0.003 3.997 9 C -0.168 4.168 10 C -0.190 4.190 11 N -0.016 5.016 12 N -0.373 5.373 13 C 0.207 3.793 14 H 0.022 0.978 15 C -0.194 4.194 16 C -0.588 4.588 17 H 0.078 0.922 18 C -0.178 4.178 19 N -0.550 5.550 20 Si 0.791 3.209 21 H -0.207 1.207 22 H -0.199 1.199 23 H -0.194 1.194 24 H 0.076 0.924 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.186 0.814 30 H 0.204 0.796 31 H 0.182 0.818 32 H 0.096 0.904 33 H 0.119 0.881 34 H 0.075 0.925 35 H 0.212 0.788 36 H 0.046 0.954 37 H 0.038 0.962 38 H 0.086 0.914 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.876 13.056 -6.919 15.560 hybrid contribution -0.146 -0.531 2.516 2.576 sum 4.731 12.525 -4.403 14.094 Atomic orbital electron populations 1.21468 0.94964 1.00901 1.00656 1.20522 0.96250 0.91848 1.02698 1.21178 1.00016 0.97838 0.93748 1.22779 0.94845 0.91214 0.97498 1.67682 1.14592 1.07168 1.32282 1.23104 0.95989 1.00652 0.87108 1.22472 1.00046 0.94066 1.01102 1.18771 0.96396 0.94109 0.90414 1.22869 1.05627 0.93168 0.95173 1.21036 1.02420 1.01845 0.93722 1.74520 1.05650 1.10582 1.10875 1.48782 1.68915 1.17636 1.01944 1.18077 0.89178 0.76722 0.95342 0.97819 1.22008 0.99272 1.01237 0.96893 1.21493 1.35150 1.00326 1.01827 0.92238 1.25641 0.94447 0.97369 1.00394 1.70000 1.36554 1.12832 1.35624 0.85495 0.78433 0.77493 0.79491 1.20750 1.19907 1.19367 0.92436 0.93684 0.94078 0.90491 0.90870 0.81376 0.79597 0.81785 0.90402 0.88065 0.92456 0.78758 0.95444 0.96155 0.91428 0.92453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.95 9.39 71.98 0.68 -3.28 16 2 C -0.08 -2.33 5.34 29.85 0.16 -2.18 16 3 C -0.12 -3.54 5.19 -19.49 -0.10 -3.65 16 4 C 0.09 2.37 10.82 84.58 0.92 3.28 16 5 N -0.51 -12.74 10.35 -196.25 -2.03 -14.77 16 6 C 0.09 1.78 11.17 84.57 0.94 2.72 16 7 C -0.15 -3.28 9.46 22.64 0.21 -3.06 16 8 C 0.01 0.37 5.91 -19.94 -0.12 0.25 16 9 C 0.02 0.59 7.01 45.27 0.32 0.91 16 10 C -0.13 -3.23 9.15 71.24 0.65 -2.57 16 11 N -0.20 -7.81 5.77 -42.87 -0.25 -8.06 16 12 N -0.64 -27.14 5.95 -172.51 -1.03 -28.16 16 13 C 0.31 15.67 3.23 44.25 0.14 15.81 16 14 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 15 C -0.13 -6.59 9.29 71.98 0.67 -5.93 16 16 C -0.55 -29.16 8.74 25.60 0.22 -28.93 16 17 H 0.06 3.07 7.79 -2.91 -0.02 3.05 16 18 C 0.02 1.18 5.30 84.65 0.45 1.62 16 19 N -0.91 -50.73 11.32 21.45 0.24 -50.49 16 20 Si 0.97 41.90 29.54 68.60 2.03 43.93 16 21 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 22 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 23 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 24 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.04 1.49 6.52 -2.39 -0.02 1.48 16 27 H 0.08 2.04 8.03 -2.39 -0.02 2.02 16 28 H 0.07 2.76 5.88 -2.38 -0.01 2.75 16 29 H 0.17 3.51 8.05 -2.91 -0.02 3.48 16 30 H 0.19 2.38 8.06 -2.91 -0.02 2.36 16 31 H 0.16 2.40 6.42 -2.91 -0.02 2.38 16 32 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 33 H 0.10 1.81 6.41 -2.39 -0.02 1.80 16 34 H 0.06 1.52 6.35 -2.39 -0.02 1.51 16 35 H 0.37 14.83 6.36 -213.31 -1.36 13.47 16 36 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.07 3.60 6.07 -2.39 -0.01 3.59 16 39 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -60.79 317.33 3.80 -56.99 By element: Atomic # 1 Polarization: 25.86 SS G_CDS: -0.31 Total: 25.56 kcal Atomic # 6 Polarization: -30.13 SS G_CDS: 5.14 Total: -24.99 kcal Atomic # 7 Polarization: -98.42 SS G_CDS: -3.06 Total: -101.48 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -60.79 3.80 -56.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765583881.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.398 kcal (2) G-P(sol) polarization free energy of solvation -60.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds