Wall clock time and date at job start Mon Mar 30 2020 06:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47203 * 2 1 4 4 C 1.34777 * 120.00048 * 269.99467 * 3 2 1 5 5 O 1.21286 * 120.00048 * 184.82671 * 4 3 2 6 6 C 1.50700 * 119.99602 * 4.83917 * 4 3 2 7 7 C 1.53002 * 109.46688 * 179.97438 * 6 4 3 8 8 C 1.50704 * 109.47004 * 179.97438 * 7 6 4 9 9 H 1.07998 * 120.00156 * 359.97438 * 8 7 6 10 10 C 1.37876 * 120.00149 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99832 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 120.00183 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47261 * 60.00540 * 12 10 8 14 14 H 1.48500 * 109.47292 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47328 * 300.00374 * 12 10 8 16 16 C 1.39924 * 119.99684 * 90.00237 * 3 2 1 17 17 C 1.38869 * 120.06692 * 247.67276 * 16 3 2 18 18 C 1.38108 * 119.92932 * 180.30133 * 17 16 3 19 19 C 1.38285 * 120.06916 * 359.47055 * 18 17 16 20 20 C 1.50702 * 119.93275 * 180.28024 * 19 18 17 21 21 C 1.38283 * 120.13966 * 0.51063 * 19 18 17 22 22 C 1.38112 * 120.07121 * 359.76549 * 21 19 18 23 23 H 1.08997 * 109.47255 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46883 * 299.99963 * 1 2 3 25 25 H 1.09000 * 109.47239 * 59.99773 * 1 2 3 26 26 H 1.09003 * 109.47305 * 239.99831 * 2 1 3 27 27 H 1.09000 * 109.47239 * 120.00227 * 2 1 3 28 28 H 1.09006 * 109.46923 * 299.99072 * 6 4 3 29 29 H 1.08999 * 109.47466 * 59.99499 * 6 4 3 30 30 H 1.08993 * 109.47113 * 299.99242 * 7 6 4 31 31 H 1.08999 * 109.47271 * 59.99754 * 7 6 4 32 32 H 0.97000 * 120.00056 * 179.97438 * 11 10 8 33 33 H 1.08007 * 120.03663 * 0.03191 * 17 16 3 34 34 H 1.08005 * 119.96892 * 179.70171 * 18 17 16 35 35 H 1.09009 * 109.46827 * 270.23476 * 20 19 18 36 36 H 1.09006 * 109.47278 * 30.22772 * 20 19 18 37 37 H 1.08996 * 109.47590 * 150.23434 * 20 19 18 38 38 H 1.08004 * 119.96246 * 179.74370 * 21 19 18 39 39 H 1.07995 * 120.03665 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2431 2.0165 -1.1672 5 8 2.7297 3.1275 -1.1691 6 6 1.8896 1.3465 -2.4699 7 6 2.2424 2.2755 -3.6333 8 6 1.8895 1.6052 -4.9362 9 1 1.4572 0.6156 -4.9346 10 6 2.1185 2.2555 -6.1302 11 7 2.6454 3.4605 -6.1322 12 14 1.6817 1.4245 -7.7451 13 1 0.2269 1.1279 -7.7715 14 1 2.0241 2.3261 -8.8743 15 1 2.4474 0.1586 -7.8734 16 6 2.2516 2.0407 1.2118 17 6 1.4512 3.1121 1.5862 18 6 1.6879 3.7649 2.7799 19 6 2.7137 3.3459 3.6073 20 6 2.9652 4.0566 4.9122 21 6 3.5122 2.2792 3.2376 22 6 3.2843 1.6257 2.0424 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 2.4504 0.4165 -2.5641 29 1 0.8214 1.1302 -2.4892 30 1 1.6814 3.2051 -3.5390 31 1 3.3105 2.4921 -3.6142 32 1 2.8069 3.9178 -6.9722 33 1 0.6473 3.4372 0.9424 34 1 1.0689 4.6013 3.0694 35 1 3.6684 4.8738 4.7512 36 1 2.0260 4.4557 5.2956 37 1 3.3831 3.3545 5.6337 38 1 4.3151 1.9570 3.8841 39 1 3.9085 0.7930 1.7540 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812876209.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:49 Heat of formation + Delta-G solvation = -24.671845 kcal Electronic energy + Delta-G solvation = -19154.603672 eV Core-core repulsion = 16254.597671 eV Total energy + Delta-G solvation = -2900.006001 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.32523 -38.47939 -35.79561 -33.57535 -32.51498 -30.94823 -30.80810 -30.05628 -26.84035 -25.33076 -23.56672 -22.40188 -22.26277 -20.74054 -18.79539 -17.22874 -16.75955 -15.76692 -15.68837 -15.37078 -14.51724 -14.47333 -14.25312 -13.81810 -13.65055 -13.43883 -13.34021 -12.93891 -12.35645 -12.24088 -12.18504 -11.99864 -11.89823 -11.46301 -11.16385 -11.09156 -11.06535 -10.88087 -10.61664 -9.92676 -9.64999 -9.25513 -9.11640 -8.95298 -8.90990 -8.32269 -8.12141 -5.95747 -4.00510 1.28867 1.42927 3.15076 3.20478 3.34463 3.39313 3.40989 3.73877 4.47076 4.80726 4.83557 4.93551 5.01789 5.17753 5.23076 5.33719 5.38972 5.41538 5.45562 5.46682 5.53594 5.70384 5.74387 5.82968 5.90473 6.04173 6.13472 6.19848 6.26966 6.30518 6.57116 6.57827 6.73943 6.85806 7.23095 7.64950 7.73923 7.85301 8.06872 8.37865 8.71493 9.07568 9.62968 11.15172 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.034189 B = 0.004069 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.778647 B = 6880.487310 C = 7331.728060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.109 3.891 3 N -0.588 5.588 4 C 0.513 3.487 5 O -0.518 6.518 6 C -0.126 4.126 7 C 0.037 3.963 8 C -0.528 4.528 9 H 0.055 0.945 10 C 0.058 3.942 11 N -0.889 5.889 12 Si 0.893 3.107 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.277 1.277 16 C 0.151 3.849 17 C -0.106 4.106 18 C -0.110 4.110 19 C -0.097 4.097 20 C -0.111 4.111 21 C -0.112 4.112 22 C -0.122 4.122 23 H 0.066 0.934 24 H 0.055 0.945 25 H 0.065 0.935 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.023 0.977 31 H 0.023 0.977 32 H 0.261 0.739 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.122 0.878 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.445 -5.763 20.586 21.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.013 4.013 3 N -0.320 5.320 4 C 0.304 3.696 5 O -0.391 6.391 6 C -0.166 4.166 7 C -0.001 4.001 8 C -0.566 4.566 9 H 0.074 0.926 10 C -0.143 4.143 11 N -0.528 5.528 12 Si 0.721 3.279 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.202 1.202 16 C 0.061 3.939 17 C -0.125 4.125 18 C -0.129 4.129 19 C -0.098 4.098 20 C -0.168 4.168 21 C -0.131 4.131 22 C -0.141 4.141 23 H 0.085 0.915 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.106 0.894 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.071 0.929 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.140 0.860 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.115 -5.011 20.397 21.110 hybrid contribution -0.255 -0.476 -0.978 1.117 sum -2.370 -5.486 19.420 20.318 Atomic orbital electron populations 1.22226 0.95771 1.02272 1.02835 1.21604 0.94680 0.81662 1.03338 1.45934 1.67559 1.14572 1.03952 1.21763 0.76566 0.86173 0.85120 1.90694 1.41556 1.19927 1.86961 1.21936 1.02003 1.01152 0.91493 1.18916 0.97919 0.93888 0.89363 1.21167 1.42108 1.02270 0.91064 0.92627 1.25023 0.95223 0.94889 0.99209 1.69990 1.43426 1.12667 1.26704 0.86647 0.78834 0.79273 0.83145 1.20237 1.21287 1.20239 1.17630 0.94680 0.94642 0.86993 1.21274 0.99061 0.95974 0.96220 1.20888 0.98121 0.99682 0.94176 1.19896 0.96259 0.96637 0.96970 1.20759 1.02167 1.00044 0.93816 1.20840 0.99516 0.96173 0.96561 1.21212 0.96568 1.01263 0.95090 0.91460 0.92574 0.91626 0.89399 0.90718 0.90141 0.89971 0.95838 0.95831 0.92878 0.86024 0.85940 0.91262 0.91690 0.91731 0.85987 0.85954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.86 10.23 37.16 0.38 -1.48 16 2 C 0.11 1.29 5.84 -4.04 -0.02 1.27 16 3 N -0.59 -9.34 2.52 -113.46 -0.29 -9.62 16 4 C 0.51 10.43 7.52 -10.99 -0.08 10.34 16 5 O -0.52 -12.83 15.73 5.55 0.09 -12.74 16 6 C -0.13 -2.61 4.30 -27.88 -0.12 -2.73 16 7 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 8 C -0.53 -15.01 9.11 -34.44 -0.31 -15.32 16 9 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 10 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 11 N -0.89 -27.58 13.29 55.43 0.74 -26.84 16 12 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 16 C 0.15 2.33 4.76 -83.70 -0.40 1.93 16 17 C -0.11 -1.58 9.54 -39.40 -0.38 -1.95 16 18 C -0.11 -1.39 9.69 -39.61 -0.38 -1.77 16 19 C -0.10 -1.11 5.88 -104.59 -0.62 -1.73 16 20 C -0.11 -0.91 10.01 36.01 0.36 -0.55 16 21 C -0.11 -1.31 9.69 -39.61 -0.38 -1.69 16 22 C -0.12 -1.63 9.68 -39.39 -0.38 -2.01 16 23 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.80 6.95 -51.93 -0.36 0.44 16 26 H 0.09 1.00 6.47 -51.93 -0.34 0.66 16 27 H 0.07 0.73 7.85 -51.93 -0.41 0.33 16 28 H 0.08 1.51 7.26 -51.93 -0.38 1.13 16 29 H 0.08 1.55 6.95 -51.93 -0.36 1.19 16 30 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 31 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 32 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 33 H 0.12 1.87 8.06 -52.48 -0.42 1.44 16 34 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 35 H 0.07 0.55 8.14 -51.92 -0.42 0.12 16 36 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 37 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 38 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 39 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 328.95 15.07 4.96 4.96 Total: -1.00 -34.30 328.95 -8.10 -42.40 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -6.02 Total: -1.63 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: -2.55 Total: -13.20 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.45 Total: -36.46 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.09 Total: -12.74 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.30 -8.10 -42.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812876209.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.727 kcal (2) G-P(sol) polarization free energy of solvation -34.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds