Wall clock time and date at job start Mon Mar 30 2020 06:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47203 * 2 1 4 4 C 1.34777 * 120.00048 * 269.99467 * 3 2 1 5 5 O 1.21286 * 120.00048 * 184.82671 * 4 3 2 6 6 C 1.50700 * 119.99602 * 4.83917 * 4 3 2 7 7 C 1.53002 * 109.46688 * 179.97438 * 6 4 3 8 8 C 1.50704 * 109.47004 * 179.97438 * 7 6 4 9 9 H 1.07998 * 120.00156 * 359.97438 * 8 7 6 10 10 C 1.37876 * 120.00149 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99832 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 120.00183 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47261 * 60.00540 * 12 10 8 14 14 H 1.48500 * 109.47292 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47328 * 300.00374 * 12 10 8 16 16 C 1.39924 * 119.99684 * 90.00237 * 3 2 1 17 17 C 1.38869 * 120.06692 * 247.67276 * 16 3 2 18 18 C 1.38108 * 119.92932 * 180.30133 * 17 16 3 19 19 C 1.38285 * 120.06916 * 359.47055 * 18 17 16 20 20 C 1.50702 * 119.93275 * 180.28024 * 19 18 17 21 21 C 1.38283 * 120.13966 * 0.51063 * 19 18 17 22 22 C 1.38112 * 120.07121 * 359.76549 * 21 19 18 23 23 H 1.08997 * 109.47255 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46883 * 299.99963 * 1 2 3 25 25 H 1.09000 * 109.47239 * 59.99773 * 1 2 3 26 26 H 1.09003 * 109.47305 * 239.99831 * 2 1 3 27 27 H 1.09000 * 109.47239 * 120.00227 * 2 1 3 28 28 H 1.09006 * 109.46923 * 299.99072 * 6 4 3 29 29 H 1.08999 * 109.47466 * 59.99499 * 6 4 3 30 30 H 1.08993 * 109.47113 * 299.99242 * 7 6 4 31 31 H 1.08999 * 109.47271 * 59.99754 * 7 6 4 32 32 H 0.97000 * 120.00056 * 179.97438 * 11 10 8 33 33 H 1.08007 * 120.03663 * 0.03191 * 17 16 3 34 34 H 1.08005 * 119.96892 * 179.70171 * 18 17 16 35 35 H 1.09009 * 109.46827 * 270.23476 * 20 19 18 36 36 H 1.09006 * 109.47278 * 30.22772 * 20 19 18 37 37 H 1.08996 * 109.47590 * 150.23434 * 20 19 18 38 38 H 1.08004 * 119.96246 * 179.74370 * 21 19 18 39 39 H 1.07995 * 120.03665 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2431 2.0165 -1.1672 5 8 2.7297 3.1275 -1.1691 6 6 1.8896 1.3465 -2.4699 7 6 2.2424 2.2755 -3.6333 8 6 1.8895 1.6052 -4.9362 9 1 1.4572 0.6156 -4.9346 10 6 2.1185 2.2555 -6.1302 11 7 2.6454 3.4605 -6.1322 12 14 1.6817 1.4245 -7.7451 13 1 0.2269 1.1279 -7.7715 14 1 2.0241 2.3261 -8.8743 15 1 2.4474 0.1586 -7.8734 16 6 2.2516 2.0407 1.2118 17 6 1.4512 3.1121 1.5862 18 6 1.6879 3.7649 2.7799 19 6 2.7137 3.3459 3.6073 20 6 2.9652 4.0566 4.9122 21 6 3.5122 2.2792 3.2376 22 6 3.2843 1.6257 2.0424 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 2.4504 0.4165 -2.5641 29 1 0.8214 1.1302 -2.4892 30 1 1.6814 3.2051 -3.5390 31 1 3.3105 2.4921 -3.6142 32 1 2.8069 3.9178 -6.9722 33 1 0.6473 3.4372 0.9424 34 1 1.0689 4.6013 3.0694 35 1 3.6684 4.8738 4.7512 36 1 2.0260 4.4557 5.2956 37 1 3.3831 3.3545 5.6337 38 1 4.3151 1.9570 3.8841 39 1 3.9085 0.7930 1.7540 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812876209.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:48 Heat of formation + Delta-G solvation = -44.680618 kcal Electronic energy + Delta-G solvation = -19155.471317 eV Core-core repulsion = 16254.597671 eV Total energy + Delta-G solvation = -2900.873647 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.62197 -39.70537 -37.11906 -35.64179 -33.69943 -32.63740 -31.94516 -31.08953 -28.34847 -26.82083 -24.72579 -23.86321 -23.38042 -22.13381 -20.19023 -18.91036 -18.24316 -17.44639 -16.97266 -16.50653 -16.32871 -15.92836 -15.41986 -14.89798 -14.65447 -14.49341 -14.41108 -14.34746 -14.20117 -13.60687 -13.35364 -13.05714 -12.93555 -12.80305 -12.76654 -12.49820 -12.36887 -12.19620 -12.03271 -11.78693 -11.61731 -11.34043 -10.82235 -10.57035 -10.21650 -9.92280 -9.22948 -8.18651 -6.33417 0.25636 0.41917 1.41764 1.46638 1.54327 1.58617 1.94305 2.42721 2.72915 3.14163 3.78288 3.90934 3.99879 4.02627 4.05892 4.26723 4.40465 4.43288 4.44796 4.50464 4.53573 4.62187 4.80482 4.86636 4.87665 4.93861 5.04443 5.09679 5.16229 5.35003 5.35392 5.46504 5.51311 5.58644 5.64057 5.71137 5.82747 6.11540 6.15489 6.27200 6.84333 7.20069 7.37011 8.93999 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.034189 B = 0.004069 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.778647 B = 6880.487310 C = 7331.728060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.099 3.901 3 N -0.573 5.573 4 C 0.512 3.488 5 O -0.578 6.578 6 C -0.112 4.112 7 C 0.044 3.956 8 C -0.544 4.544 9 H 0.078 0.922 10 C -0.007 4.007 11 N -0.938 5.938 12 Si 0.976 3.024 13 H -0.262 1.262 14 H -0.288 1.288 15 H -0.261 1.261 16 C 0.118 3.882 17 C -0.129 4.129 18 C -0.118 4.118 19 C -0.095 4.095 20 C -0.110 4.110 21 C -0.111 4.111 22 C -0.128 4.128 23 H 0.096 0.904 24 H 0.052 0.948 25 H 0.046 0.954 26 H 0.096 0.904 27 H 0.102 0.898 28 H 0.107 0.893 29 H 0.104 0.896 30 H -0.020 1.020 31 H -0.019 1.019 32 H 0.263 0.737 33 H 0.103 0.897 34 H 0.140 0.860 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.154 0.846 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.789 -8.226 22.059 23.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.021 4.021 3 N -0.303 5.303 4 C 0.303 3.697 5 O -0.456 6.456 6 C -0.152 4.152 7 C 0.006 3.994 8 C -0.582 4.582 9 H 0.096 0.904 10 C -0.204 4.204 11 N -0.578 5.578 12 Si 0.799 3.201 13 H -0.186 1.186 14 H -0.214 1.214 15 H -0.185 1.185 16 C 0.028 3.972 17 C -0.149 4.149 18 C -0.136 4.136 19 C -0.095 4.095 20 C -0.166 4.166 21 C -0.129 4.129 22 C -0.147 4.147 23 H 0.115 0.885 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.114 0.886 27 H 0.120 0.880 28 H 0.125 0.875 29 H 0.122 0.878 30 H -0.002 1.002 31 H -0.001 1.001 32 H 0.072 0.928 33 H 0.121 0.879 34 H 0.158 0.842 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.172 0.828 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.488 -7.537 21.925 23.317 hybrid contribution -0.139 0.319 -1.288 1.335 sum -2.627 -7.218 20.636 22.019 Atomic orbital electron populations 1.22180 0.94799 1.03813 1.01758 1.21981 0.95508 0.79485 1.05110 1.45802 1.65865 1.15685 1.02957 1.21612 0.76214 0.85477 0.86392 1.90662 1.44671 1.22388 1.87895 1.21687 1.03621 1.00319 0.89537 1.18686 0.94523 0.93676 0.92499 1.21661 1.41817 1.03158 0.91515 0.90405 1.26162 0.94833 0.95441 1.04002 1.70181 1.44934 1.14795 1.27903 0.85348 0.79319 0.78272 0.77157 1.18611 1.21382 1.18536 1.17887 0.96377 0.95758 0.87150 1.21312 0.99424 0.96786 0.97344 1.21163 0.98933 0.99974 0.93529 1.20343 0.95019 0.96255 0.97862 1.20831 1.03141 1.00347 0.92276 1.21250 0.99929 0.95606 0.96150 1.21412 0.95954 1.01883 0.95455 0.88527 0.92924 0.93443 0.88560 0.87988 0.87512 0.87812 1.00190 1.00053 0.92839 0.87913 0.84178 0.90691 0.90507 0.89784 0.82835 0.84658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.32 10.23 71.98 0.74 -2.58 16 2 C 0.10 2.18 5.84 86.38 0.50 2.68 16 3 N -0.57 -18.26 2.52 -631.25 -1.59 -19.85 16 4 C 0.51 21.63 7.52 87.66 0.66 22.29 16 5 O -0.58 -30.59 15.73 -3.05 -0.05 -30.64 16 6 C -0.11 -4.71 4.30 29.85 0.13 -4.59 16 7 C 0.04 2.51 4.26 29.85 0.13 2.63 16 8 C -0.54 -31.31 9.11 25.60 0.23 -31.08 16 9 H 0.08 4.04 7.74 -2.91 -0.02 4.01 16 10 C -0.01 -0.41 5.46 84.65 0.46 0.06 16 11 N -0.94 -60.35 13.29 21.45 0.28 -60.07 16 12 Si 0.98 44.52 29.54 68.60 2.03 46.55 16 13 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 14 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 15 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 16 C 0.12 3.66 4.76 38.15 0.18 3.84 16 17 C -0.13 -3.99 9.54 22.39 0.21 -3.77 16 18 C -0.12 -2.90 9.69 22.25 0.22 -2.69 16 19 C -0.09 -1.97 5.88 -19.84 -0.12 -2.08 16 20 C -0.11 -1.45 10.01 71.24 0.71 -0.74 16 21 C -0.11 -2.32 9.69 22.25 0.22 -2.10 16 22 C -0.13 -3.24 9.68 22.39 0.22 -3.03 16 23 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.05 1.11 6.95 -2.39 -0.02 1.10 16 26 H 0.10 1.95 6.47 -2.39 -0.02 1.94 16 27 H 0.10 1.72 7.85 -2.39 -0.02 1.70 16 28 H 0.11 3.89 7.26 -2.38 -0.02 3.88 16 29 H 0.10 3.89 6.95 -2.39 -0.02 3.87 16 30 H -0.02 -1.32 8.10 -2.39 -0.02 -1.34 16 31 H -0.02 -1.23 8.10 -2.39 -0.02 -1.25 16 32 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 33 H 0.10 3.43 8.06 -2.91 -0.02 3.40 16 34 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 35 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 36 H 0.08 0.86 8.09 -2.38 -0.02 0.84 16 37 H 0.08 0.82 8.08 -2.39 -0.02 0.80 16 38 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 39 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -79.42 328.95 6.18 -73.24 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: 1.01 Total: 11.92 kcal Atomic # 6 Polarization: -25.64 SS G_CDS: 4.49 Total: -21.15 kcal Atomic # 7 Polarization: -78.62 SS G_CDS: -1.31 Total: -79.92 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -0.05 Total: -30.64 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -79.42 6.18 -73.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812876209.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.564 kcal (2) G-P(sol) polarization free energy of solvation -79.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds