Wall clock time and date at job start Mon Mar 30 2020 07:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46685 * 2 1 4 4 C 1.50702 * 109.46453 * 179.97438 * 3 2 1 5 5 N 1.29808 * 119.99912 * 274.99613 * 4 3 2 6 6 N 1.40105 * 120.00308 * 0.02562 * 5 4 3 7 7 C 1.46495 * 120.00030 * 179.97438 * 6 5 4 8 8 H 1.08995 * 109.47222 * 30.00248 * 7 6 5 9 9 C 1.52995 * 109.47289 * 269.99899 * 7 6 5 10 10 C 1.50703 * 109.46764 * 149.99853 * 7 6 5 11 11 H 1.07998 * 120.00338 * 0.02562 * 10 7 6 12 12 C 1.37879 * 119.99943 * 179.97438 * 10 7 6 13 13 N 1.31515 * 120.00150 * 359.97438 * 12 10 7 14 14 Si 1.86798 * 120.00091 * 180.02562 * 12 10 7 15 15 H 1.48499 * 109.47273 * 90.00019 * 14 12 10 16 16 H 1.48500 * 109.47217 * 209.99684 * 14 12 10 17 17 H 1.48501 * 109.47141 * 329.99587 * 14 12 10 18 18 C 1.47367 * 120.00190 * 95.00055 * 4 3 2 19 19 C 1.39726 * 119.76446 * 179.97438 * 18 4 3 20 20 C 1.38265 * 119.04014 * 180.02562 * 19 18 4 21 21 C 1.38887 * 118.54715 * 359.97438 * 20 19 18 22 22 C 1.38240 * 119.43482 * 0.26343 * 21 20 19 23 23 N 1.31747 * 120.93286 * 359.46993 * 22 21 20 24 24 H 1.09009 * 109.47009 * 60.00150 * 1 2 3 25 25 H 1.08999 * 109.47522 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47700 * 300.00643 * 1 2 3 27 27 H 1.08990 * 109.47205 * 239.99679 * 2 1 3 28 28 H 1.08999 * 109.46718 * 119.99446 * 2 1 3 29 29 H 1.08998 * 109.47282 * 59.99951 * 3 2 1 30 30 H 1.08999 * 109.47090 * 299.99218 * 3 2 1 31 31 H 0.97002 * 119.99170 * 359.97438 * 6 5 4 32 32 H 1.09003 * 109.46979 * 300.00544 * 9 7 6 33 33 H 1.09000 * 109.47302 * 59.99802 * 9 7 6 34 34 H 1.08998 * 109.47692 * 180.02562 * 9 7 6 35 35 H 0.97001 * 120.00591 * 180.02562 * 13 12 10 36 36 H 1.07999 * 120.48085 * 359.97438 * 19 18 4 37 37 H 1.07999 * 120.73018 * 180.02562 * 20 19 18 38 38 H 1.08002 * 120.27918 * 179.97438 * 21 20 19 39 39 H 1.07998 * 119.53461 * 179.74277 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4425 0.0006 5 7 4.1955 1.3448 1.1208 6 7 3.4945 1.2388 2.3293 7 6 4.2265 1.1279 3.5934 8 1 5.1789 1.6511 3.5089 9 6 4.4813 -0.3477 3.9075 10 6 3.4116 1.7439 4.7013 11 1 2.4449 2.1745 4.4855 12 6 3.8996 1.7568 5.9908 13 7 5.0760 1.2311 6.2540 14 14 2.8892 2.5197 7.3643 15 1 2.0151 1.4833 7.9702 16 1 3.7989 3.0683 8.4020 17 1 2.0505 3.6140 6.8127 18 6 4.2844 1.5535 -1.2704 19 6 5.6816 1.5535 -1.2640 20 6 6.3583 1.6590 -2.4651 21 6 5.6192 1.7607 -3.6366 22 6 4.2384 1.7595 -3.5710 23 7 3.6154 1.6528 -2.4150 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 2.5245 1.2388 2.3288 32 1 3.5288 -0.8709 3.9919 33 1 5.0706 -0.7932 3.1061 34 1 5.0255 -0.4303 4.8482 35 1 5.4193 1.2398 7.1612 36 1 6.2252 1.4731 -0.3343 37 1 7.4379 1.6613 -2.4920 38 1 6.1191 1.8448 -4.5903 39 1 3.6621 1.8427 -4.4805 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814881803.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:02 Heat of formation + Delta-G solvation = 60.484276 kcal Electronic energy + Delta-G solvation = -19110.229596 eV Core-core repulsion = 16246.208992 eV Total energy + Delta-G solvation = -2864.020603 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.89175 -37.34898 -34.81698 -33.29489 -32.33018 -31.91252 -30.33415 -27.82598 -26.48707 -25.23909 -23.62839 -23.09780 -21.44722 -20.55612 -19.17835 -17.50900 -16.27475 -16.06277 -15.50219 -14.99424 -14.85855 -14.57628 -14.06525 -13.81009 -13.28533 -13.14903 -12.97532 -12.64986 -12.31292 -11.89733 -11.79627 -11.50573 -11.33169 -11.08763 -11.05430 -10.80177 -10.41325 -10.37635 -10.26072 -10.23726 -9.73591 -9.66130 -9.16969 -9.03943 -8.91378 -8.52722 -6.84486 -6.16671 -4.25102 1.02664 1.44354 2.88845 3.22744 3.29399 3.31743 3.61605 4.16582 4.32402 4.64948 4.82592 4.94584 5.16035 5.19922 5.25868 5.33933 5.36900 5.42225 5.66735 5.83413 5.93256 5.95624 6.07746 6.08765 6.21970 6.28206 6.38345 6.46606 6.56502 6.72792 6.88940 6.96724 6.97200 7.11132 7.53755 7.72874 7.82149 8.07941 8.17872 8.25520 8.81737 9.24238 9.41863 10.89136 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.022515 B = 0.004739 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.299389 B = 5907.236997 C = 6686.977273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.089 4.089 4 C 0.018 3.982 5 N -0.181 5.181 6 N -0.609 5.609 7 C 0.295 3.705 8 H 0.043 0.957 9 C -0.150 4.150 10 C -0.531 4.531 11 H 0.060 0.940 12 C 0.068 3.932 13 N -0.885 5.885 14 Si 0.902 3.098 15 H -0.279 1.279 16 H -0.284 1.284 17 H -0.274 1.274 18 C 0.213 3.787 19 C -0.152 4.152 20 C -0.076 4.076 21 C -0.191 4.191 22 C 0.100 3.900 23 N -0.480 5.480 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.374 0.626 32 H 0.026 0.974 33 H 0.013 0.987 34 H 0.091 0.909 35 H 0.265 0.735 36 H 0.143 0.857 37 H 0.131 0.869 38 H 0.128 0.872 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.765 -0.705 -15.780 15.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C -0.129 4.129 4 C -0.169 4.169 5 N 0.004 4.996 6 N -0.347 5.347 7 C 0.193 3.807 8 H 0.061 0.939 9 C -0.209 4.209 10 C -0.570 4.570 11 H 0.078 0.922 12 C -0.135 4.135 13 N -0.523 5.523 14 Si 0.730 3.270 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.198 1.198 18 C 0.076 3.924 19 C -0.174 4.174 20 C -0.102 4.102 21 C -0.212 4.212 22 C -0.058 4.058 23 N -0.192 5.192 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.212 0.788 32 H 0.045 0.955 33 H 0.032 0.968 34 H 0.109 0.891 35 H 0.075 0.925 36 H 0.161 0.839 37 H 0.149 0.851 38 H 0.146 0.854 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.534 -0.785 -14.957 15.056 hybrid contribution -0.663 0.381 0.528 0.929 sum -2.197 -0.404 -14.429 14.601 Atomic orbital electron populations 1.21757 0.95968 1.01244 1.01653 1.21400 0.95367 0.96495 1.02048 1.20655 0.91941 0.97390 1.02872 1.21812 0.92921 1.12409 0.89748 1.73967 1.28595 1.03730 0.93350 1.49134 1.06545 1.78340 1.00645 1.18599 0.92830 0.92934 0.76350 0.93946 1.22200 0.99287 0.97834 1.01580 1.21213 1.04559 1.38969 0.92263 0.92188 1.24844 0.95103 0.95106 0.98466 1.69884 1.17419 1.44259 1.20751 0.86428 0.79823 0.79430 0.81338 1.20503 1.21005 1.19847 1.19085 0.89550 0.93590 0.90189 1.22261 0.94947 1.00681 0.99519 1.21511 1.00404 0.96019 0.92269 1.22075 0.95701 1.04369 0.99089 1.22594 0.92032 0.95704 0.95496 1.67648 1.40753 1.12950 0.97809 0.92796 0.93066 0.92803 0.91974 0.92252 0.91892 0.89814 0.78849 0.95475 0.96828 0.89090 0.92536 0.83917 0.85096 0.85354 0.83070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.91 37.16 0.37 -1.48 16 2 C -0.11 -1.69 5.85 -26.73 -0.16 -1.84 16 3 C -0.09 -1.41 4.56 -27.88 -0.13 -1.54 16 4 C 0.02 0.33 6.35 -79.73 -0.51 -0.18 16 5 N -0.18 -3.69 10.59 35.10 0.37 -3.32 16 6 N -0.61 -13.33 5.95 -5.89 -0.04 -13.37 16 7 C 0.29 7.40 3.23 -69.09 -0.22 7.17 16 8 H 0.04 1.18 8.14 -51.93 -0.42 0.76 16 9 C -0.15 -3.63 9.29 37.15 0.35 -3.29 16 10 C -0.53 -14.09 8.74 -34.44 -0.30 -14.39 16 11 H 0.06 1.57 7.79 -52.49 -0.41 1.16 16 12 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 13 N -0.89 -24.36 11.32 55.43 0.63 -23.73 16 14 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 15 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 17 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 18 C 0.21 3.50 6.73 -83.12 -0.56 2.94 16 19 C -0.15 -2.27 9.61 -39.02 -0.38 -2.65 16 20 C -0.08 -0.90 10.16 -39.33 -0.40 -1.30 16 21 C -0.19 -2.02 10.11 -39.34 -0.40 -2.42 16 22 C 0.10 1.18 11.17 -17.59 -0.20 0.98 16 23 N -0.48 -7.19 9.38 -9.92 -0.09 -7.28 16 24 H 0.05 0.62 8.14 -51.92 -0.42 0.19 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.97 7.98 -51.93 -0.41 0.56 16 29 H 0.06 1.04 6.63 -51.93 -0.34 0.70 16 30 H 0.08 1.28 7.46 -51.93 -0.39 0.89 16 31 H 0.37 7.75 6.26 -182.59 -1.14 6.60 16 32 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 35 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 36 H 0.14 2.22 7.55 -52.49 -0.40 1.83 16 37 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 38 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 328.32 15.07 4.95 4.95 Total: -1.00 -28.15 328.32 -8.60 -36.75 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -6.77 Total: 6.68 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: -2.62 Total: -16.27 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: 0.87 Total: -47.70 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.15 -8.60 -36.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814881803.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.230 kcal (2) G-P(sol) polarization free energy of solvation -28.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds