Wall clock time and date at job start Mon Mar 30 2020 07:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46685 * 2 1 4 4 C 1.50702 * 109.46453 * 179.97438 * 3 2 1 5 5 N 1.29808 * 119.99912 * 274.99613 * 4 3 2 6 6 N 1.40105 * 120.00308 * 0.02562 * 5 4 3 7 7 C 1.46495 * 120.00030 * 179.97438 * 6 5 4 8 8 H 1.08995 * 109.47222 * 30.00248 * 7 6 5 9 9 C 1.52995 * 109.47289 * 269.99899 * 7 6 5 10 10 C 1.50703 * 109.46764 * 149.99853 * 7 6 5 11 11 H 1.07998 * 120.00338 * 0.02562 * 10 7 6 12 12 C 1.37879 * 119.99943 * 179.97438 * 10 7 6 13 13 N 1.31515 * 120.00150 * 359.97438 * 12 10 7 14 14 Si 1.86798 * 120.00091 * 180.02562 * 12 10 7 15 15 H 1.48499 * 109.47273 * 90.00019 * 14 12 10 16 16 H 1.48500 * 109.47217 * 209.99684 * 14 12 10 17 17 H 1.48501 * 109.47141 * 329.99587 * 14 12 10 18 18 C 1.47367 * 120.00190 * 95.00055 * 4 3 2 19 19 C 1.39726 * 119.76446 * 179.97438 * 18 4 3 20 20 C 1.38265 * 119.04014 * 180.02562 * 19 18 4 21 21 C 1.38887 * 118.54715 * 359.97438 * 20 19 18 22 22 C 1.38240 * 119.43482 * 0.26343 * 21 20 19 23 23 N 1.31747 * 120.93286 * 359.46993 * 22 21 20 24 24 H 1.09009 * 109.47009 * 60.00150 * 1 2 3 25 25 H 1.08999 * 109.47522 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47700 * 300.00643 * 1 2 3 27 27 H 1.08990 * 109.47205 * 239.99679 * 2 1 3 28 28 H 1.08999 * 109.46718 * 119.99446 * 2 1 3 29 29 H 1.08998 * 109.47282 * 59.99951 * 3 2 1 30 30 H 1.08999 * 109.47090 * 299.99218 * 3 2 1 31 31 H 0.97002 * 119.99170 * 359.97438 * 6 5 4 32 32 H 1.09003 * 109.46979 * 300.00544 * 9 7 6 33 33 H 1.09000 * 109.47302 * 59.99802 * 9 7 6 34 34 H 1.08998 * 109.47692 * 180.02562 * 9 7 6 35 35 H 0.97001 * 120.00591 * 180.02562 * 13 12 10 36 36 H 1.07999 * 120.48085 * 359.97438 * 19 18 4 37 37 H 1.07999 * 120.73018 * 180.02562 * 20 19 18 38 38 H 1.08002 * 120.27918 * 179.97438 * 21 20 19 39 39 H 1.07998 * 119.53461 * 179.74277 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4425 0.0006 5 7 4.1955 1.3448 1.1208 6 7 3.4945 1.2388 2.3293 7 6 4.2265 1.1279 3.5934 8 1 5.1789 1.6511 3.5089 9 6 4.4813 -0.3477 3.9075 10 6 3.4116 1.7439 4.7013 11 1 2.4449 2.1745 4.4855 12 6 3.8996 1.7568 5.9908 13 7 5.0760 1.2311 6.2540 14 14 2.8892 2.5197 7.3643 15 1 2.0151 1.4833 7.9702 16 1 3.7989 3.0683 8.4020 17 1 2.0505 3.6140 6.8127 18 6 4.2844 1.5535 -1.2704 19 6 5.6816 1.5535 -1.2640 20 6 6.3583 1.6590 -2.4651 21 6 5.6192 1.7607 -3.6366 22 6 4.2384 1.7595 -3.5710 23 7 3.6154 1.6528 -2.4150 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 2.5245 1.2388 2.3288 32 1 3.5288 -0.8709 3.9919 33 1 5.0706 -0.7932 3.1061 34 1 5.0255 -0.4303 4.8482 35 1 5.4193 1.2398 7.1612 36 1 6.2252 1.4731 -0.3343 37 1 7.4379 1.6613 -2.4920 38 1 6.1191 1.8448 -4.5903 39 1 3.6621 1.8427 -4.4805 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814881803.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:02 Heat of formation + Delta-G solvation = 44.690368 kcal Electronic energy + Delta-G solvation = -19110.914471 eV Core-core repulsion = 16246.208992 eV Total energy + Delta-G solvation = -2864.705479 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.97464 -38.79866 -36.55318 -34.74663 -33.55233 -33.28739 -31.79003 -29.28060 -27.91665 -27.25268 -24.84032 -24.13232 -22.63527 -22.36454 -20.61792 -19.03478 -17.82757 -17.22921 -16.96830 -16.57068 -16.06514 -15.87105 -15.37269 -15.23742 -14.60156 -14.51153 -14.32241 -13.97627 -13.91273 -13.39412 -13.06354 -12.94871 -12.85676 -12.70311 -12.53568 -12.40669 -12.25913 -12.10832 -11.81716 -11.60749 -11.14820 -10.92720 -10.76318 -10.59219 -10.24224 -10.11342 -8.45199 -8.18112 -6.35570 -0.09599 0.44275 1.42519 1.42817 1.53344 1.59068 2.07252 2.44190 3.06776 3.10478 3.41917 3.74458 4.02145 4.11692 4.18954 4.23479 4.30478 4.31683 4.60447 4.62254 4.69537 4.79068 4.88476 4.95131 4.96176 4.98770 5.10628 5.15454 5.17743 5.31682 5.32791 5.40816 5.44510 5.55390 5.76726 5.84195 5.89005 6.15825 6.38793 6.82314 7.08285 7.35745 7.69455 8.86350 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.022515 B = 0.004739 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.299389 B = 5907.236997 C = 6686.977273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.106 4.106 3 C -0.087 4.087 4 C 0.048 3.952 5 N -0.225 5.225 6 N -0.627 5.627 7 C 0.306 3.694 8 H 0.003 0.997 9 C -0.134 4.134 10 C -0.548 4.548 11 H 0.059 0.941 12 C 0.022 3.978 13 N -0.913 5.913 14 Si 0.969 3.031 15 H -0.271 1.271 16 H -0.281 1.281 17 H -0.270 1.270 18 C 0.173 3.827 19 C -0.167 4.167 20 C -0.076 4.076 21 C -0.166 4.166 22 C 0.093 3.907 23 N -0.492 5.492 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.037 0.963 29 H 0.054 0.946 30 H 0.094 0.906 31 H 0.375 0.625 32 H 0.029 0.971 33 H 0.017 0.983 34 H 0.070 0.930 35 H 0.267 0.733 36 H 0.124 0.876 37 H 0.161 0.839 38 H 0.173 0.827 39 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.446 -0.335 -18.487 18.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.145 4.145 3 C -0.127 4.127 4 C -0.142 4.142 5 N -0.037 5.037 6 N -0.365 5.365 7 C 0.203 3.797 8 H 0.021 0.979 9 C -0.194 4.194 10 C -0.587 4.587 11 H 0.077 0.923 12 C -0.179 4.179 13 N -0.551 5.551 14 Si 0.794 3.206 15 H -0.197 1.197 16 H -0.206 1.206 17 H -0.195 1.195 18 C 0.037 3.963 19 C -0.189 4.189 20 C -0.102 4.102 21 C -0.187 4.187 22 C -0.066 4.066 23 N -0.204 5.204 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.113 0.887 31 H 0.214 0.786 32 H 0.048 0.952 33 H 0.036 0.964 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.142 0.858 37 H 0.178 0.822 38 H 0.190 0.810 39 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -2.214 -0.419 -17.669 17.812 hybrid contribution -0.374 0.297 0.976 1.087 sum -2.588 -0.122 -16.693 16.893 Atomic orbital electron populations 1.21719 0.93779 1.02298 1.02273 1.21309 0.97213 0.95070 1.00929 1.20705 0.90746 0.98389 1.02826 1.22474 0.94249 1.07468 0.89989 1.73993 1.28870 1.07405 0.93434 1.48576 1.06081 1.81375 1.00441 1.18168 0.91266 0.92469 0.77825 0.97866 1.22005 0.99027 0.97805 1.00536 1.21485 1.04715 1.39338 0.93150 0.92283 1.25667 0.96104 0.95413 1.00690 1.70007 1.18746 1.45021 1.21323 0.85397 0.78337 0.78663 0.78251 1.19670 1.20608 1.19501 1.19010 0.90126 0.97053 0.90109 1.22273 0.94647 1.01599 1.00410 1.21897 1.02051 0.94806 0.91423 1.22586 0.95256 1.00548 1.00292 1.23330 0.93315 0.94441 0.95470 1.67609 1.41462 1.13101 0.98227 0.91371 0.91822 0.92967 0.91975 0.94396 0.92759 0.88738 0.78608 0.95217 0.96375 0.91118 0.92363 0.85790 0.82169 0.80961 0.79385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 9.91 71.98 0.71 -2.66 16 2 C -0.11 -3.12 5.85 30.60 0.18 -2.94 16 3 C -0.09 -2.79 4.56 29.85 0.14 -2.65 16 4 C 0.05 1.76 6.35 45.26 0.29 2.05 16 5 N -0.22 -9.70 10.59 -42.88 -0.45 -10.15 16 6 N -0.63 -29.03 5.95 -172.54 -1.03 -30.05 16 7 C 0.31 16.25 3.23 44.25 0.14 16.39 16 8 H 0.00 0.20 8.14 -2.39 -0.02 0.19 16 9 C -0.13 -6.84 9.29 71.98 0.67 -6.17 16 10 C -0.55 -30.11 8.74 25.60 0.22 -29.89 16 11 H 0.06 3.17 7.79 -2.91 -0.02 3.15 16 12 C 0.02 1.18 5.30 84.66 0.45 1.63 16 13 N -0.91 -51.71 11.32 21.45 0.24 -51.47 16 14 Si 0.97 42.78 29.54 68.60 2.03 44.81 16 15 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 16 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 17 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 18 C 0.17 5.64 6.73 41.74 0.28 5.92 16 19 C -0.17 -4.95 9.61 22.64 0.22 -4.73 16 20 C -0.08 -1.58 10.16 22.43 0.23 -1.36 16 21 C -0.17 -2.74 10.11 22.43 0.23 -2.51 16 22 C 0.09 1.83 11.17 84.71 0.95 2.78 16 23 N -0.49 -13.78 9.38 -185.29 -1.74 -15.52 16 24 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 25 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.04 1.27 7.98 -2.39 -0.02 1.25 16 29 H 0.05 1.84 6.63 -2.39 -0.02 1.83 16 30 H 0.09 2.82 7.46 -2.39 -0.02 2.80 16 31 H 0.38 16.42 6.26 -213.31 -1.33 15.09 16 32 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.07 3.87 6.07 -2.39 -0.01 3.85 16 35 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 36 H 0.12 4.07 7.55 -2.91 -0.02 4.05 16 37 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 38 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 39 H 0.19 2.24 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -63.71 328.32 3.45 -60.26 By element: Atomic # 1 Polarization: 26.57 SS G_CDS: -0.30 Total: 26.27 kcal Atomic # 6 Polarization: -28.84 SS G_CDS: 4.70 Total: -24.14 kcal Atomic # 7 Polarization: -104.21 SS G_CDS: -2.98 Total: -107.19 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -63.71 3.45 -60.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814881803.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.949 kcal (2) G-P(sol) polarization free energy of solvation -63.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds