Wall clock time and date at job start Mon Mar 30 2020 07:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47610 * 2 1 4 4 C 1.50694 * 109.47429 * 180.02562 * 3 2 1 5 5 N 1.29817 * 119.99945 * 275.00129 * 4 3 2 6 6 N 1.40096 * 119.99639 * 359.97438 * 5 4 3 7 7 C 1.46500 * 119.99929 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.47168 * 330.00443 * 7 6 5 9 9 C 1.53000 * 109.47294 * 90.00108 * 7 6 5 10 10 C 1.50703 * 109.47279 * 210.00137 * 7 6 5 11 11 H 1.07995 * 119.99959 * 0.02562 * 10 7 6 12 12 C 1.37881 * 120.00029 * 179.97438 * 10 7 6 13 13 N 1.31512 * 119.99639 * 0.02562 * 12 10 7 14 14 Si 1.86796 * 120.00067 * 180.02562 * 12 10 7 15 15 H 1.48503 * 109.46987 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.47279 * 120.00296 * 14 12 10 17 17 H 1.48504 * 109.47017 * 240.00645 * 14 12 10 18 18 C 1.47368 * 120.00393 * 94.99577 * 4 3 2 19 19 C 1.39726 * 119.76477 * 180.02562 * 18 4 3 20 20 C 1.38265 * 119.04014 * 179.97438 * 19 18 4 21 21 C 1.38887 * 118.54715 * 359.97438 * 20 19 18 22 22 C 1.38240 * 119.43482 * 0.26343 * 21 20 19 23 23 N 1.31747 * 120.93286 * 359.46993 * 22 21 20 24 24 H 1.09001 * 109.46810 * 300.00028 * 1 2 3 25 25 H 1.09005 * 109.46951 * 59.99721 * 1 2 3 26 26 H 1.09001 * 109.47579 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46810 * 239.99972 * 2 1 3 28 28 H 1.08999 * 109.47315 * 120.00492 * 2 1 3 29 29 H 1.09000 * 109.46925 * 59.99584 * 3 2 1 30 30 H 1.09001 * 109.46740 * 299.99952 * 3 2 1 31 31 H 0.96998 * 120.00428 * 0.02562 * 6 5 4 32 32 H 1.08992 * 109.47643 * 180.02562 * 9 7 6 33 33 H 1.09005 * 109.47077 * 300.00605 * 9 7 6 34 34 H 1.09003 * 109.46739 * 60.00072 * 9 7 6 35 35 H 0.97011 * 119.99555 * 179.97438 * 13 12 10 36 36 H 1.07999 * 120.48085 * 359.95589 * 19 18 4 37 37 H 1.07999 * 120.73018 * 180.02562 * 20 19 18 38 38 H 1.08002 * 120.27918 * 179.97438 * 21 20 19 39 39 H 1.07998 * 119.53461 * 179.74277 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 7 4.1966 1.3442 1.1190 6 7 3.4965 1.2388 2.3280 7 6 4.2295 1.1286 3.5916 8 1 5.1819 0.6280 3.4168 9 6 4.4847 2.5272 4.1569 10 6 3.4154 0.3296 4.5765 11 1 2.4489 -0.0577 4.2897 12 6 3.9049 0.0922 5.8435 13 7 5.0821 0.5634 6.1925 14 14 2.8962 -0.8988 7.0640 15 1 1.6186 -1.3123 6.4299 16 1 3.6590 -2.1056 7.4723 17 1 2.6091 -0.0665 8.2600 18 6 4.2834 1.5537 -1.2723 19 6 5.6807 1.5526 -1.2671 20 6 6.3564 1.6573 -2.4688 21 6 5.6163 1.7593 -3.6397 22 6 4.2356 1.7591 -3.5728 23 7 3.6136 1.6532 -2.4163 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6768 1.9563 -0.8900 31 1 2.5265 1.2389 2.3284 32 1 5.0304 2.4453 5.0968 33 1 5.0735 3.1052 3.4445 34 1 3.5323 3.0277 4.3318 35 1 5.4263 0.3967 7.0840 36 1 6.2250 1.4715 -0.3378 37 1 7.4360 1.6588 -2.4966 38 1 6.1154 1.8428 -4.5938 39 1 3.6585 1.8426 -4.4819 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814881804.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:04 Heat of formation + Delta-G solvation = 60.426977 kcal Electronic energy + Delta-G solvation = -19116.865059 eV Core-core repulsion = 16252.841971 eV Total energy + Delta-G solvation = -2864.023088 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.89164 -37.34524 -34.81461 -33.28264 -32.32816 -31.91115 -30.33289 -27.82607 -26.47933 -25.23937 -23.62569 -23.09776 -21.42339 -20.57017 -19.16510 -17.50662 -16.27095 -16.06809 -15.49791 -14.99907 -14.85869 -14.56949 -14.05867 -13.78965 -13.29601 -13.11955 -12.96024 -12.60506 -12.43204 -11.87827 -11.74496 -11.45274 -11.36391 -11.10378 -11.03610 -10.75957 -10.48500 -10.36965 -10.25572 -10.17951 -9.73302 -9.66423 -9.16709 -9.04157 -8.90805 -8.52947 -6.84403 -6.16919 -4.25069 1.02640 1.44346 2.88736 3.21814 3.29615 3.32659 3.61685 4.16610 4.32330 4.65054 4.82774 4.94591 5.16032 5.19959 5.27617 5.36123 5.37203 5.44151 5.66865 5.84205 5.93668 5.95986 6.09463 6.11010 6.22873 6.28978 6.40422 6.48080 6.57867 6.72724 6.88949 6.96590 6.97407 7.10832 7.53904 7.72808 7.82136 8.07901 8.17865 8.25401 8.82110 9.24236 9.41934 10.89025 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.022937 B = 0.004822 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.450735 B = 5805.047209 C = 6692.188466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C -0.088 4.088 4 C 0.018 3.982 5 N -0.181 5.181 6 N -0.609 5.609 7 C 0.295 3.705 8 H 0.043 0.957 9 C -0.151 4.151 10 C -0.529 4.529 11 H 0.061 0.939 12 C 0.067 3.933 13 N -0.885 5.885 14 Si 0.902 3.098 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.282 1.282 18 C 0.213 3.787 19 C -0.152 4.152 20 C -0.076 4.076 21 C -0.191 4.191 22 C 0.100 3.900 23 N -0.480 5.480 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.374 0.626 32 H 0.091 0.909 33 H 0.013 0.987 34 H 0.026 0.974 35 H 0.264 0.736 36 H 0.143 0.857 37 H 0.131 0.869 38 H 0.128 0.872 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.786 1.855 -15.562 15.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.128 4.128 4 C -0.169 4.169 5 N 0.004 4.996 6 N -0.347 5.347 7 C 0.192 3.808 8 H 0.061 0.939 9 C -0.210 4.210 10 C -0.569 4.569 11 H 0.079 0.921 12 C -0.136 4.136 13 N -0.523 5.523 14 Si 0.730 3.270 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.208 1.208 18 C 0.076 3.924 19 C -0.174 4.174 20 C -0.102 4.102 21 C -0.212 4.212 22 C -0.058 4.058 23 N -0.192 5.192 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.212 0.788 32 H 0.109 0.891 33 H 0.032 0.968 34 H 0.045 0.955 35 H 0.074 0.926 36 H 0.161 0.839 37 H 0.149 0.851 38 H 0.146 0.854 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.559 1.804 -14.739 14.931 hybrid contribution -0.647 -0.452 0.460 0.913 sum -2.206 1.352 -14.279 14.512 Atomic orbital electron populations 1.21751 0.96002 1.01274 1.01552 1.21409 0.95346 0.96449 1.02227 1.20643 0.91918 0.97469 1.02727 1.21815 0.92929 1.12421 0.89740 1.73970 1.28599 1.03719 0.93354 1.49132 1.06559 1.78352 1.00626 1.18609 0.92835 0.93012 0.76297 0.93914 1.22208 0.99297 0.97426 1.02049 1.21250 1.04578 1.33967 0.97080 0.92095 1.24846 0.95111 0.95682 0.97916 1.69901 1.17388 1.44786 1.20246 0.86378 0.80122 0.79729 0.80813 1.19719 1.20827 1.20826 1.19084 0.89546 0.93587 0.90193 1.22260 0.94954 1.00680 0.99516 1.21510 1.00403 0.96019 0.92269 1.22075 0.95696 1.04371 0.99093 1.22595 0.92042 0.95703 0.95486 1.67648 1.40750 1.12949 0.97811 0.92844 0.92856 0.93042 0.91979 0.92001 0.92025 0.89858 0.78846 0.89087 0.96821 0.95474 0.92602 0.83918 0.85097 0.85354 0.83070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.91 37.16 0.37 -1.52 16 2 C -0.12 -1.75 5.85 -26.73 -0.16 -1.90 16 3 C -0.09 -1.40 4.56 -27.89 -0.13 -1.53 16 4 C 0.02 0.33 6.35 -79.73 -0.51 -0.18 16 5 N -0.18 -3.69 10.59 35.09 0.37 -3.32 16 6 N -0.61 -13.33 5.95 -5.88 -0.03 -13.36 16 7 C 0.29 7.38 3.23 -69.08 -0.22 7.16 16 8 H 0.04 1.19 8.14 -51.93 -0.42 0.76 16 9 C -0.15 -3.66 9.29 37.16 0.35 -3.31 16 10 C -0.53 -14.02 8.74 -34.44 -0.30 -14.32 16 11 H 0.06 1.59 7.79 -52.49 -0.41 1.18 16 12 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 13 N -0.89 -24.35 11.32 55.43 0.63 -23.72 16 14 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 15 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 18 C 0.21 3.50 6.73 -83.12 -0.56 2.94 16 19 C -0.15 -2.27 9.61 -39.02 -0.38 -2.65 16 20 C -0.08 -0.90 10.16 -39.33 -0.40 -1.30 16 21 C -0.19 -2.02 10.11 -39.34 -0.40 -2.42 16 22 C 0.10 1.18 11.17 -17.59 -0.20 0.98 16 23 N -0.48 -7.19 9.37 -9.92 -0.09 -7.28 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.06 1.06 7.98 -51.93 -0.41 0.64 16 29 H 0.06 1.00 6.63 -51.93 -0.34 0.66 16 30 H 0.08 1.27 7.46 -51.93 -0.39 0.88 16 31 H 0.37 7.74 6.26 -182.60 -1.14 6.60 16 32 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 33 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 36 H 0.14 2.22 7.55 -52.49 -0.40 1.83 16 37 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 38 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 328.33 15.07 4.95 4.95 Total: -1.00 -28.13 328.33 -8.60 -36.73 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -6.77 Total: 6.77 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: -2.62 Total: -16.35 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: 0.87 Total: -47.68 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.13 -8.60 -36.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814881804.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.154 kcal (2) G-P(sol) polarization free energy of solvation -28.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds