Wall clock time and date at job start Mon Mar 30 2020 07:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.50696 * 109.47055 * 179.97438 * 3 2 1 5 5 N 1.29743 * 119.99776 * 89.99866 * 4 3 2 6 6 N 1.40096 * 120.00322 * 0.02562 * 5 4 3 7 7 C 1.46498 * 120.00513 * 179.97438 * 6 5 4 8 8 H 1.08999 * 109.46777 * 29.99531 * 7 6 5 9 9 C 1.53006 * 109.47370 * 270.00188 * 7 6 5 10 10 C 1.50693 * 109.47517 * 149.99761 * 7 6 5 11 11 H 1.08002 * 119.99900 * 0.02562 * 10 7 6 12 12 C 1.37880 * 120.00134 * 179.97438 * 10 7 6 13 13 N 1.31514 * 120.00062 * 0.02562 * 12 10 7 14 14 Si 1.86799 * 119.99863 * 180.02562 * 12 10 7 15 15 H 1.48499 * 109.47364 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47046 * 120.00568 * 14 12 10 17 17 H 1.48501 * 109.47306 * 240.00707 * 14 12 10 18 18 C 1.47494 * 120.00502 * 269.99822 * 4 3 2 19 19 C 1.40094 * 120.57710 * 179.72186 * 18 4 3 20 20 C 1.38336 * 118.28399 * 179.71029 * 19 18 4 21 21 C 1.38358 * 119.31679 * 0.60836 * 20 19 18 22 22 N 1.31915 * 121.10857 * 359.65469 * 21 20 19 23 23 C 1.31696 * 121.88240 * 0.02562 * 22 21 20 24 24 H 1.09001 * 109.46998 * 59.99868 * 1 2 3 25 25 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46801 * 300.00272 * 1 2 3 27 27 H 1.09001 * 109.47002 * 119.99574 * 2 1 3 28 28 H 1.08993 * 109.46955 * 240.00011 * 2 1 3 29 29 H 1.09001 * 109.47289 * 299.99953 * 3 2 1 30 30 H 1.09004 * 109.47261 * 59.99697 * 3 2 1 31 31 H 0.97000 * 119.99938 * 0.02562 * 6 5 4 32 32 H 1.08997 * 109.47056 * 59.99339 * 9 7 6 33 33 H 1.08991 * 109.47233 * 179.97438 * 9 7 6 34 34 H 1.09003 * 109.46949 * 299.99833 * 9 7 6 35 35 H 0.96993 * 119.99978 * 179.97438 * 13 12 10 36 36 H 1.08000 * 120.85833 * 359.97438 * 19 18 4 37 37 H 1.08000 * 120.34078 * 180.25995 * 20 19 18 38 38 H 1.07995 * 119.44743 * 179.67470 * 21 20 19 39 39 H 1.08008 * 119.72011 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.1962 1.4423 -1.1227 6 7 3.4962 1.4426 -2.3363 7 6 4.2291 1.4429 -3.6047 8 1 5.1815 0.9291 -3.4741 9 6 4.4844 2.8856 -4.0460 10 6 3.4152 0.7328 -4.6555 11 1 2.4483 0.3226 -4.4038 12 6 3.9043 0.6077 -5.9385 13 7 5.0814 1.1076 -6.2452 14 14 2.8950 -0.2720 -7.2412 15 1 1.6170 -0.7384 -6.6459 16 1 2.6078 0.6622 -8.3593 17 1 3.6574 -1.4385 -7.7541 18 6 4.2841 1.4427 1.2782 19 6 5.6849 1.4368 1.2928 20 6 6.3277 1.4434 2.5177 21 6 5.5743 1.4427 3.6782 22 7 4.2559 1.4427 3.6348 23 6 3.5974 1.4427 2.4943 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 2.5262 1.4434 -2.3367 32 1 5.0731 3.3992 -3.2860 33 1 5.0301 2.8858 -4.9894 34 1 3.5320 3.3995 -4.1765 35 1 5.4256 1.0192 -7.1477 36 1 6.2485 1.4316 0.3715 37 1 7.4066 1.4435 2.5677 38 1 6.0740 1.4426 4.6356 39 1 2.5174 1.4431 2.4995 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814883435.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:06 Heat of formation + Delta-G solvation = 58.348978 kcal Electronic energy + Delta-G solvation = -19105.061869 eV Core-core repulsion = 16240.948672 eV Total energy + Delta-G solvation = -2864.113197 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.94283 -37.49015 -34.95668 -33.46074 -32.45022 -31.65425 -30.45109 -27.76525 -26.63929 -25.26809 -23.63171 -23.10425 -21.56005 -20.60559 -19.12445 -17.42052 -16.77170 -16.18034 -15.47327 -15.06548 -14.77174 -14.74556 -14.01399 -13.75983 -13.37829 -13.28951 -12.84328 -12.65888 -12.53319 -12.04085 -11.83188 -11.54703 -11.49643 -11.17825 -11.08581 -10.81449 -10.59044 -10.55618 -10.29962 -10.25042 -9.63936 -9.51408 -9.32892 -9.12037 -8.94712 -8.55364 -6.84707 -6.19412 -4.27848 1.00669 1.43222 2.93134 3.19607 3.27574 3.30391 3.70585 4.09448 4.31519 4.52260 4.82175 4.99413 5.07682 5.13380 5.17857 5.21047 5.25629 5.31988 5.57422 5.64829 5.75509 5.88167 5.92709 5.97541 6.16539 6.23653 6.29808 6.41981 6.54750 6.66374 6.81802 6.93095 6.95475 7.08168 7.51286 7.70471 7.79088 8.06746 8.08771 8.22575 8.79292 9.22015 9.39320 10.86514 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.022886 B = 0.004778 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.162772 B = 5858.388372 C = 6748.090366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.097 4.097 4 C 0.011 3.989 5 N -0.186 5.186 6 N -0.614 5.614 7 C 0.295 3.705 8 H 0.042 0.958 9 C -0.150 4.150 10 C -0.530 4.530 11 H 0.060 0.940 12 C 0.068 3.932 13 N -0.885 5.885 14 Si 0.902 3.098 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.282 1.282 18 C -0.042 4.042 19 C -0.063 4.063 20 C -0.169 4.169 21 C 0.078 3.922 22 N -0.484 5.484 23 C 0.097 3.903 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.372 0.628 32 H 0.012 0.988 33 H 0.091 0.909 34 H 0.026 0.974 35 H 0.264 0.736 36 H 0.142 0.858 37 H 0.132 0.868 38 H 0.150 0.850 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.747 0.428 14.095 14.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.137 4.137 4 C -0.176 4.176 5 N 0.001 4.999 6 N -0.351 5.351 7 C 0.193 3.807 8 H 0.060 0.940 9 C -0.210 4.210 10 C -0.569 4.569 11 H 0.079 0.921 12 C -0.136 4.136 13 N -0.523 5.523 14 Si 0.730 3.270 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.046 4.046 19 C -0.091 4.091 20 C -0.189 4.189 21 C -0.080 4.080 22 N -0.192 5.192 23 C -0.063 4.063 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.210 0.790 32 H 0.031 0.969 33 H 0.109 0.891 34 H 0.045 0.955 35 H 0.074 0.926 36 H 0.160 0.840 37 H 0.150 0.850 38 H 0.167 0.833 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -2.065 0.453 14.054 14.212 hybrid contribution -1.120 -0.397 -1.465 1.886 sum -3.185 0.056 12.589 12.986 Atomic orbital electron populations 1.21778 0.95818 1.01551 1.01681 1.21466 0.95474 0.96172 1.02655 1.20797 0.92486 0.97638 1.02780 1.22068 0.92430 1.12557 0.90556 1.74009 1.28558 1.04100 0.93238 1.49131 1.06425 1.79308 1.00206 1.18586 0.92798 0.93040 0.76284 0.94000 1.22207 0.99257 0.97647 1.01850 1.21242 1.04558 1.36803 0.94343 0.92148 1.24850 0.95113 0.95359 0.98231 1.69892 1.17391 1.44682 1.20323 0.86378 0.80102 0.79333 0.81226 1.19740 1.20812 1.20800 1.19288 0.93325 0.99635 0.92350 1.21822 0.93827 0.94732 0.98730 1.22065 1.01320 1.02182 0.93333 1.22662 0.89759 0.97357 0.98208 1.67591 1.09929 1.12178 1.29526 1.22846 1.00150 0.96752 0.86579 0.92670 0.92817 0.92846 0.91834 0.91618 0.91264 0.90803 0.78995 0.96867 0.89098 0.95512 0.92574 0.84044 0.85008 0.83275 0.82747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.91 37.16 0.37 -1.30 16 2 C -0.12 -1.55 5.92 -26.73 -0.16 -1.71 16 3 C -0.10 -1.34 4.38 -27.89 -0.12 -1.46 16 4 C 0.01 0.18 6.36 -79.71 -0.51 -0.32 16 5 N -0.19 -3.65 10.69 35.11 0.38 -3.27 16 6 N -0.61 -13.08 5.95 -5.88 -0.04 -13.11 16 7 C 0.29 7.31 3.23 -69.08 -0.22 7.09 16 8 H 0.04 1.16 8.14 -51.93 -0.42 0.73 16 9 C -0.15 -3.62 9.29 37.16 0.35 -3.28 16 10 C -0.53 -13.91 8.74 -34.44 -0.30 -14.21 16 11 H 0.06 1.56 7.79 -52.49 -0.41 1.15 16 12 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 13 N -0.89 -24.23 11.32 55.43 0.63 -23.60 16 14 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 15 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 C -0.04 -0.62 5.88 -104.90 -0.62 -1.24 16 19 C -0.06 -0.90 9.70 -38.85 -0.38 -1.28 16 20 C -0.17 -2.00 10.10 -39.50 -0.40 -2.39 16 21 C 0.08 0.92 11.17 -17.47 -0.20 0.72 16 22 N -0.48 -6.61 10.35 -12.88 -0.13 -6.74 16 23 C 0.10 1.31 10.54 -17.08 -0.18 1.13 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.07 1.02 6.35 -51.93 -0.33 0.69 16 30 H 0.07 0.86 6.50 -51.93 -0.34 0.52 16 31 H 0.37 7.43 6.36 -182.60 -1.16 6.27 16 32 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 34 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 36 H 0.14 2.12 7.65 -52.49 -0.40 1.72 16 37 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 38 H 0.15 1.30 8.06 -52.49 -0.42 0.87 16 39 H 0.16 1.77 6.38 -52.48 -0.33 1.44 16 LS Contribution 326.34 15.07 4.92 4.92 Total: -1.00 -28.05 326.34 -8.38 -36.43 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -6.65 Total: 6.52 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: -2.46 Total: -16.56 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: 0.83 Total: -46.73 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.05 -8.38 -36.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814883435.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.774 kcal (2) G-P(sol) polarization free energy of solvation -28.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds