Wall clock time and date at job start Mon Mar 30 2020 07:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.50696 * 109.47055 * 179.97438 * 3 2 1 5 5 N 1.29743 * 119.99776 * 89.99866 * 4 3 2 6 6 N 1.40096 * 120.00322 * 0.02562 * 5 4 3 7 7 C 1.46498 * 120.00513 * 179.97438 * 6 5 4 8 8 H 1.08999 * 109.46777 * 29.99531 * 7 6 5 9 9 C 1.53006 * 109.47370 * 270.00188 * 7 6 5 10 10 C 1.50693 * 109.47517 * 149.99761 * 7 6 5 11 11 H 1.08002 * 119.99900 * 0.02562 * 10 7 6 12 12 C 1.37880 * 120.00134 * 179.97438 * 10 7 6 13 13 N 1.31514 * 120.00062 * 0.02562 * 12 10 7 14 14 Si 1.86799 * 119.99863 * 180.02562 * 12 10 7 15 15 H 1.48499 * 109.47364 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47046 * 120.00568 * 14 12 10 17 17 H 1.48501 * 109.47306 * 240.00707 * 14 12 10 18 18 C 1.47494 * 120.00502 * 269.99822 * 4 3 2 19 19 C 1.40094 * 120.57710 * 179.72186 * 18 4 3 20 20 C 1.38336 * 118.28399 * 179.71029 * 19 18 4 21 21 C 1.38358 * 119.31679 * 0.60836 * 20 19 18 22 22 N 1.31915 * 121.10857 * 359.65469 * 21 20 19 23 23 C 1.31696 * 121.88240 * 0.02562 * 22 21 20 24 24 H 1.09001 * 109.46998 * 59.99868 * 1 2 3 25 25 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46801 * 300.00272 * 1 2 3 27 27 H 1.09001 * 109.47002 * 119.99574 * 2 1 3 28 28 H 1.08993 * 109.46955 * 240.00011 * 2 1 3 29 29 H 1.09001 * 109.47289 * 299.99953 * 3 2 1 30 30 H 1.09004 * 109.47261 * 59.99697 * 3 2 1 31 31 H 0.97000 * 119.99938 * 0.02562 * 6 5 4 32 32 H 1.08997 * 109.47056 * 59.99339 * 9 7 6 33 33 H 1.08991 * 109.47233 * 179.97438 * 9 7 6 34 34 H 1.09003 * 109.46949 * 299.99833 * 9 7 6 35 35 H 0.96993 * 119.99978 * 179.97438 * 13 12 10 36 36 H 1.08000 * 120.85833 * 359.97438 * 19 18 4 37 37 H 1.08000 * 120.34078 * 180.25995 * 20 19 18 38 38 H 1.07995 * 119.44743 * 179.67470 * 21 20 19 39 39 H 1.08008 * 119.72011 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.1962 1.4423 -1.1227 6 7 3.4962 1.4426 -2.3363 7 6 4.2291 1.4429 -3.6047 8 1 5.1815 0.9291 -3.4741 9 6 4.4844 2.8856 -4.0460 10 6 3.4152 0.7328 -4.6555 11 1 2.4483 0.3226 -4.4038 12 6 3.9043 0.6077 -5.9385 13 7 5.0814 1.1076 -6.2452 14 14 2.8950 -0.2720 -7.2412 15 1 1.6170 -0.7384 -6.6459 16 1 2.6078 0.6622 -8.3593 17 1 3.6574 -1.4385 -7.7541 18 6 4.2841 1.4427 1.2782 19 6 5.6849 1.4368 1.2928 20 6 6.3277 1.4434 2.5177 21 6 5.5743 1.4427 3.6782 22 7 4.2559 1.4427 3.6348 23 6 3.5974 1.4427 2.4943 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 2.5262 1.4434 -2.3367 32 1 5.0731 3.3992 -3.2860 33 1 5.0301 2.8858 -4.9894 34 1 3.5320 3.3995 -4.1765 35 1 5.4256 1.0192 -7.1477 36 1 6.2485 1.4316 0.3715 37 1 7.4066 1.4435 2.5677 38 1 6.0740 1.4426 4.6356 39 1 2.5174 1.4431 2.4995 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814883435.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:05 Heat of formation + Delta-G solvation = 42.563332 kcal Electronic energy + Delta-G solvation = -19105.746386 eV Core-core repulsion = 16240.948672 eV Total energy + Delta-G solvation = -2864.797714 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.01708 -38.84424 -36.63106 -34.79145 -33.86673 -32.82195 -31.95952 -29.13256 -27.98340 -27.26874 -24.79639 -24.17414 -22.62014 -22.39911 -20.51604 -18.89890 -18.02698 -17.54160 -17.06321 -16.48927 -16.16180 -15.77154 -15.27425 -15.13356 -14.59894 -14.50734 -14.39877 -14.00763 -13.93293 -13.41750 -13.05965 -12.98178 -12.87251 -12.75204 -12.54474 -12.50217 -12.27385 -12.12707 -11.82202 -11.62241 -11.14687 -10.79718 -10.71413 -10.58364 -10.40574 -10.11104 -8.40514 -8.18479 -6.36197 -0.09629 0.37551 1.40682 1.42019 1.53499 1.67964 2.15914 2.45688 3.02904 3.09879 3.48498 3.74456 3.95008 4.04406 4.08535 4.16579 4.17924 4.30922 4.56831 4.60652 4.70517 4.74487 4.83081 4.92039 4.96758 4.97966 5.10335 5.16263 5.20015 5.25405 5.37100 5.43233 5.45383 5.55169 5.76678 5.82586 5.86962 6.17129 6.39772 6.83023 7.05226 7.35458 7.75095 8.85747 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.022886 B = 0.004778 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.162772 B = 5858.388372 C = 6748.090366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.112 4.112 3 C -0.099 4.099 4 C 0.048 3.952 5 N -0.238 5.238 6 N -0.632 5.632 7 C 0.307 3.693 8 H 0.001 0.999 9 C -0.135 4.135 10 C -0.545 4.545 11 H 0.059 0.941 12 C 0.021 3.979 13 N -0.914 5.914 14 Si 0.968 3.032 15 H -0.267 1.267 16 H -0.276 1.276 17 H -0.280 1.280 18 C -0.074 4.074 19 C -0.075 4.075 20 C -0.165 4.165 21 C 0.089 3.911 22 N -0.500 5.500 23 C 0.108 3.892 24 H 0.049 0.951 25 H 0.060 0.940 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.034 0.966 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.375 0.625 32 H 0.017 0.983 33 H 0.069 0.931 34 H 0.029 0.971 35 H 0.267 0.733 36 H 0.125 0.875 37 H 0.162 0.838 38 H 0.187 0.813 39 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.812 0.224 16.503 16.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.151 4.151 3 C -0.138 4.138 4 C -0.141 4.141 5 N -0.048 5.048 6 N -0.369 5.369 7 C 0.203 3.797 8 H 0.019 0.981 9 C -0.195 4.195 10 C -0.584 4.584 11 H 0.078 0.922 12 C -0.180 4.180 13 N -0.552 5.552 14 Si 0.793 3.207 15 H -0.191 1.191 16 H -0.202 1.202 17 H -0.206 1.206 18 C -0.079 4.079 19 C -0.103 4.103 20 C -0.184 4.184 21 C -0.068 4.068 22 N -0.208 5.208 23 C -0.052 4.052 24 H 0.068 0.932 25 H 0.079 0.921 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.053 0.947 29 H 0.078 0.922 30 H 0.123 0.877 31 H 0.214 0.786 32 H 0.036 0.964 33 H 0.087 0.913 34 H 0.048 0.952 35 H 0.076 0.924 36 H 0.143 0.857 37 H 0.180 0.820 38 H 0.204 0.796 39 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -3.132 0.251 16.478 16.775 hybrid contribution -0.703 -0.332 -1.866 2.021 sum -3.835 -0.081 14.612 15.107 Atomic orbital electron populations 1.21750 0.93824 1.02313 1.02490 1.21387 0.97148 0.95068 1.01510 1.20913 0.90635 0.98547 1.03748 1.22739 0.94121 1.06907 0.90362 1.74028 1.29091 1.08251 0.93414 1.48520 1.05960 1.82513 0.99935 1.18123 0.91179 0.92468 0.77932 0.98130 1.22016 0.99014 0.97716 1.00731 1.21513 1.04673 1.37092 0.95135 0.92238 1.25674 0.96102 0.95974 1.00217 1.70016 1.18757 1.45594 1.20843 0.85358 0.78688 0.78141 0.78517 1.19120 1.20168 1.20582 1.19375 0.93750 1.02609 0.92136 1.21917 0.93954 0.95010 0.99432 1.22369 1.02942 1.00951 0.92173 1.23324 0.89304 0.94526 0.99662 1.67712 1.10932 1.12902 1.29242 1.23109 1.01109 0.95134 0.85825 0.93215 0.92130 0.90670 0.90977 0.94748 0.92213 0.87748 0.78644 0.96424 0.91263 0.95175 0.92413 0.85686 0.82045 0.79633 0.80734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 9.91 71.98 0.71 -2.22 16 2 C -0.11 -2.82 5.92 30.60 0.18 -2.64 16 3 C -0.10 -2.61 4.38 29.85 0.13 -2.48 16 4 C 0.05 1.58 6.36 45.31 0.29 1.87 16 5 N -0.24 -9.73 10.69 -42.82 -0.46 -10.19 16 6 N -0.63 -28.24 5.95 -172.53 -1.03 -29.27 16 7 C 0.31 16.04 3.23 44.25 0.14 16.18 16 8 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 9 C -0.14 -6.82 9.29 71.98 0.67 -6.15 16 10 C -0.55 -29.59 8.74 25.60 0.22 -29.36 16 11 H 0.06 3.16 7.79 -2.91 -0.02 3.13 16 12 C 0.02 1.12 5.30 84.66 0.45 1.56 16 13 N -0.91 -51.55 11.32 21.45 0.24 -51.31 16 14 Si 0.97 42.44 29.54 68.60 2.03 44.47 16 15 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 16 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 17 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 18 C -0.07 -2.14 5.88 -20.05 -0.12 -2.25 16 19 C -0.08 -2.10 9.70 22.74 0.22 -1.87 16 20 C -0.16 -3.45 10.10 22.32 0.23 -3.22 16 21 C 0.09 1.77 11.17 84.71 0.95 2.71 16 22 N -0.50 -11.95 10.35 -194.65 -2.01 -13.96 16 23 C 0.11 2.62 10.54 85.05 0.90 3.51 16 24 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.06 1.74 6.35 -2.39 -0.02 1.72 16 30 H 0.10 2.12 6.50 -2.38 -0.02 2.11 16 31 H 0.37 15.65 6.36 -213.32 -1.36 14.30 16 32 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.07 3.77 6.07 -2.39 -0.01 3.75 16 34 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 36 H 0.13 3.88 7.65 -2.91 -0.02 3.86 16 37 H 0.16 2.37 8.06 -2.91 -0.02 2.34 16 38 H 0.19 2.29 8.06 -2.91 -0.02 2.26 16 39 H 0.18 3.38 6.38 -2.91 -0.02 3.36 16 Total: -1.00 -62.67 326.34 3.42 -59.25 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: -0.32 Total: 25.38 kcal Atomic # 6 Polarization: -29.33 SS G_CDS: 4.97 Total: -24.36 kcal Atomic # 7 Polarization: -101.48 SS G_CDS: -3.26 Total: -104.74 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -62.67 3.42 -59.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814883435.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.811 kcal (2) G-P(sol) polarization free energy of solvation -62.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds