Wall clock time and date at job start Mon Mar 30 2020 07:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47512 * 2 1 4 4 C 1.50705 * 109.46907 * 175.04856 * 3 2 1 5 5 N 1.29736 * 120.00057 * 275.18691 * 4 3 2 6 6 N 1.40101 * 120.00207 * 355.29751 * 5 4 3 7 7 C 1.46497 * 119.99988 * 185.28469 * 6 5 4 8 8 H 1.09007 * 109.47445 * 329.99965 * 7 6 5 9 9 C 1.52998 * 109.47254 * 89.99637 * 7 6 5 10 10 C 1.50701 * 109.47404 * 209.99855 * 7 6 5 11 11 H 1.08001 * 119.99674 * 0.02562 * 10 7 6 12 12 C 1.37873 * 120.00476 * 179.97438 * 10 7 6 13 13 N 1.31511 * 119.99637 * 0.02562 * 12 10 7 14 14 Si 1.86798 * 120.00211 * 179.97438 * 12 10 7 15 15 H 1.48505 * 109.47003 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.47237 * 120.00104 * 14 12 10 17 17 H 1.48497 * 109.47124 * 240.00363 * 14 12 10 18 18 C 1.47500 * 119.99486 * 95.19856 * 4 3 2 19 19 C 1.40102 * 120.56851 * 180.22809 * 18 4 3 20 20 C 1.38327 * 118.28301 * 180.21428 * 19 18 4 21 21 C 1.38362 * 119.31822 * 359.52865 * 20 19 18 22 22 N 1.31918 * 121.10630 * 0.25717 * 21 20 19 23 23 C 1.31698 * 121.88635 * 359.97438 * 22 21 20 24 24 H 1.08998 * 109.47652 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.46940 * 300.00295 * 1 2 3 26 26 H 1.09003 * 109.46651 * 59.99840 * 1 2 3 27 27 H 1.09001 * 109.47056 * 239.99361 * 2 1 3 28 28 H 1.09007 * 109.47140 * 120.00137 * 2 1 3 29 29 H 1.08998 * 109.47156 * 55.05132 * 3 2 1 30 30 H 1.09003 * 109.47107 * 295.05221 * 3 2 1 31 31 H 0.96992 * 120.00143 * 5.28032 * 6 5 4 32 32 H 1.09002 * 109.47130 * 179.97438 * 9 7 6 33 33 H 1.09000 * 109.47198 * 299.99855 * 9 7 6 34 34 H 1.08999 * 109.46954 * 60.00347 * 9 7 6 35 35 H 0.97008 * 119.99731 * 179.97438 * 13 12 10 36 36 H 1.08005 * 120.85702 * 0.02562 * 19 18 4 37 37 H 1.08000 * 120.34087 * 179.80586 * 20 19 18 38 38 H 1.07994 * 119.44836 * 180.23102 * 21 20 19 39 39 H 1.07994 * 119.72268 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5421 1.4441 0.1226 5 7 4.0975 1.3754 1.2931 6 7 3.3040 1.3992 2.4475 7 6 3.9346 1.4386 3.7692 8 1 4.8984 0.9311 3.7272 9 6 4.1429 2.8943 4.1917 10 6 3.0460 0.7470 4.7707 11 1 2.1056 0.3204 4.4542 12 6 3.4338 0.6580 6.0908 13 7 4.5791 1.1771 6.4760 14 14 2.3319 -0.1986 7.3323 15 1 1.1085 -0.6925 6.6505 16 1 3.0604 -1.3449 7.9327 17 1 1.9510 0.7601 8.4005 18 6 4.3807 1.5239 -1.0881 19 6 5.7782 1.5215 -0.9884 20 6 6.5186 1.6028 -2.1540 21 6 5.8623 1.6732 -3.3700 22 7 4.5448 1.6691 -3.4346 23 6 3.7955 1.5979 -2.3539 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6062 1.9813 0.8423 30 1 1.7509 1.9301 -0.9310 31 1 2.3371 1.3896 2.3716 32 1 4.6117 2.9236 5.1753 33 1 4.7857 3.3945 3.4674 34 1 3.1792 3.4018 4.2338 35 1 4.8518 1.1148 7.4049 36 1 6.2648 1.4609 -0.0261 37 1 7.5979 1.6067 -2.1155 38 1 6.4384 1.7329 -4.2815 39 1 2.7196 1.5967 -2.4474 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814883436.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:07 Heat of formation + Delta-G solvation = 58.351606 kcal Electronic energy + Delta-G solvation = -19108.119614 eV Core-core repulsion = 16244.006531 eV Total energy + Delta-G solvation = -2864.113083 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.94118 -37.49939 -34.94535 -33.44538 -32.45052 -31.67093 -30.44750 -27.77178 -26.63369 -25.26628 -23.64184 -23.10994 -21.54764 -20.59780 -19.13620 -17.41013 -16.77427 -16.17613 -15.47991 -15.07057 -14.76316 -14.74146 -14.01652 -13.75968 -13.36607 -13.31033 -12.84415 -12.68927 -12.53831 -12.03295 -11.83857 -11.54368 -11.45530 -11.18765 -11.08155 -10.80565 -10.59142 -10.56565 -10.29982 -10.24709 -9.65087 -9.50242 -9.32567 -9.11474 -8.95384 -8.55227 -6.84718 -6.19326 -4.27766 1.00511 1.43151 2.92370 3.19641 3.27580 3.30367 3.71219 4.09332 4.31653 4.51461 4.82194 4.99490 5.07802 5.13472 5.17817 5.21268 5.25610 5.31639 5.57113 5.65165 5.75850 5.88557 5.93022 5.96836 6.16487 6.23297 6.29694 6.41457 6.54554 6.66516 6.81681 6.93096 6.95777 7.08331 7.51210 7.70369 7.79246 8.06795 8.08781 8.22665 8.79382 9.22224 9.39443 10.86566 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.023103 B = 0.004776 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.681153 B = 5861.133371 C = 6771.352494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.098 4.098 4 C 0.011 3.989 5 N -0.186 5.186 6 N -0.613 5.613 7 C 0.295 3.705 8 H 0.042 0.958 9 C -0.150 4.150 10 C -0.530 4.530 11 H 0.060 0.940 12 C 0.068 3.932 13 N -0.885 5.885 14 Si 0.902 3.098 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.282 1.282 18 C -0.042 4.042 19 C -0.063 4.063 20 C -0.169 4.169 21 C 0.078 3.922 22 N -0.484 5.484 23 C 0.096 3.904 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.372 0.628 32 H 0.091 0.909 33 H 0.012 0.988 34 H 0.026 0.974 35 H 0.264 0.736 36 H 0.142 0.858 37 H 0.132 0.868 38 H 0.150 0.850 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.628 0.525 -14.226 14.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.138 4.138 4 C -0.176 4.176 5 N 0.000 5.000 6 N -0.350 5.350 7 C 0.193 3.807 8 H 0.060 0.940 9 C -0.209 4.209 10 C -0.570 4.570 11 H 0.078 0.922 12 C -0.136 4.136 13 N -0.523 5.523 14 Si 0.729 3.271 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.046 4.046 19 C -0.091 4.091 20 C -0.189 4.189 21 C -0.080 4.080 22 N -0.192 5.192 23 C -0.064 4.064 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.210 0.790 32 H 0.109 0.891 33 H 0.031 0.969 34 H 0.045 0.955 35 H 0.074 0.926 36 H 0.160 0.840 37 H 0.150 0.850 38 H 0.167 0.833 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -0.952 0.533 -14.133 14.175 hybrid contribution -1.231 -0.453 1.377 1.901 sum -2.182 0.080 -12.756 12.942 Atomic orbital electron populations 1.21776 0.95765 1.01572 1.01714 1.21470 0.95546 0.96169 1.02607 1.20808 0.92537 0.97581 1.02838 1.22069 0.92554 1.12387 0.90580 1.73995 1.27348 1.04104 0.94510 1.49114 1.05471 1.79185 1.01229 1.18587 0.94381 0.92999 0.74762 0.93991 1.22202 0.98741 0.97659 1.02302 1.21249 1.05778 1.36991 0.92956 0.92159 1.24849 0.95292 0.95294 0.98121 1.69896 1.20693 1.44392 1.17311 0.86380 0.80456 0.79257 0.80958 1.19744 1.20811 1.20806 1.19296 0.93112 0.99597 0.92595 1.21823 0.93128 0.94739 0.99414 1.22064 1.01249 1.02137 0.93444 1.22663 0.90553 0.97366 0.97406 1.67591 1.06985 1.12236 1.32415 1.22852 0.99980 0.96750 0.86783 0.92808 0.92626 0.92835 0.91853 0.91663 0.91220 0.90784 0.79004 0.89084 0.96867 0.95502 0.92579 0.84038 0.85007 0.83273 0.82729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.91 37.16 0.37 -1.32 16 2 C -0.12 -1.56 5.91 -26.73 -0.16 -1.72 16 3 C -0.10 -1.35 4.43 -27.88 -0.12 -1.47 16 4 C 0.01 0.19 6.36 -79.70 -0.51 -0.32 16 5 N -0.19 -3.65 10.69 35.12 0.38 -3.28 16 6 N -0.61 -13.06 5.94 -5.88 -0.03 -13.09 16 7 C 0.29 7.31 3.23 -69.08 -0.22 7.08 16 8 H 0.04 1.16 8.14 -51.92 -0.42 0.74 16 9 C -0.15 -3.61 9.29 37.16 0.35 -3.26 16 10 C -0.53 -13.92 8.74 -34.44 -0.30 -14.22 16 11 H 0.06 1.56 7.79 -52.49 -0.41 1.15 16 12 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 13 N -0.89 -24.23 11.32 55.43 0.63 -23.60 16 14 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 15 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 C -0.04 -0.62 5.89 -104.90 -0.62 -1.24 16 19 C -0.06 -0.90 9.70 -38.85 -0.38 -1.28 16 20 C -0.17 -2.00 10.10 -39.50 -0.40 -2.39 16 21 C 0.08 0.92 11.17 -17.47 -0.20 0.72 16 22 N -0.48 -6.61 10.35 -12.88 -0.13 -6.74 16 23 C 0.10 1.30 10.55 -17.08 -0.18 1.12 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.07 1.02 6.52 -51.93 -0.34 0.68 16 30 H 0.07 0.85 6.24 -51.93 -0.32 0.53 16 31 H 0.37 7.44 6.44 -182.60 -1.18 6.26 16 32 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 33 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 36 H 0.14 2.12 7.65 -52.48 -0.40 1.72 16 37 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 38 H 0.15 1.30 8.06 -52.49 -0.42 0.87 16 39 H 0.16 1.77 6.27 -52.49 -0.33 1.44 16 LS Contribution 326.26 15.07 4.92 4.92 Total: -1.00 -28.04 326.26 -8.39 -36.43 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -6.66 Total: 6.54 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: -2.46 Total: -16.61 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: 0.83 Total: -46.71 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.04 -8.39 -36.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814883436.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.782 kcal (2) G-P(sol) polarization free energy of solvation -28.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds