Wall clock time and date at job start Mon Mar 30 2020 07:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47512 * 2 1 4 4 C 1.50705 * 109.46907 * 175.04856 * 3 2 1 5 5 N 1.29736 * 120.00057 * 275.18691 * 4 3 2 6 6 N 1.40101 * 120.00207 * 355.29751 * 5 4 3 7 7 C 1.46497 * 119.99988 * 185.28469 * 6 5 4 8 8 H 1.09007 * 109.47445 * 329.99965 * 7 6 5 9 9 C 1.52998 * 109.47254 * 89.99637 * 7 6 5 10 10 C 1.50701 * 109.47404 * 209.99855 * 7 6 5 11 11 H 1.08001 * 119.99674 * 0.02562 * 10 7 6 12 12 C 1.37873 * 120.00476 * 179.97438 * 10 7 6 13 13 N 1.31511 * 119.99637 * 0.02562 * 12 10 7 14 14 Si 1.86798 * 120.00211 * 179.97438 * 12 10 7 15 15 H 1.48505 * 109.47003 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.47237 * 120.00104 * 14 12 10 17 17 H 1.48497 * 109.47124 * 240.00363 * 14 12 10 18 18 C 1.47500 * 119.99486 * 95.19856 * 4 3 2 19 19 C 1.40102 * 120.56851 * 180.22809 * 18 4 3 20 20 C 1.38327 * 118.28301 * 180.21428 * 19 18 4 21 21 C 1.38362 * 119.31822 * 359.52865 * 20 19 18 22 22 N 1.31918 * 121.10630 * 0.25717 * 21 20 19 23 23 C 1.31698 * 121.88635 * 359.97438 * 22 21 20 24 24 H 1.08998 * 109.47652 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.46940 * 300.00295 * 1 2 3 26 26 H 1.09003 * 109.46651 * 59.99840 * 1 2 3 27 27 H 1.09001 * 109.47056 * 239.99361 * 2 1 3 28 28 H 1.09007 * 109.47140 * 120.00137 * 2 1 3 29 29 H 1.08998 * 109.47156 * 55.05132 * 3 2 1 30 30 H 1.09003 * 109.47107 * 295.05221 * 3 2 1 31 31 H 0.96992 * 120.00143 * 5.28032 * 6 5 4 32 32 H 1.09002 * 109.47130 * 179.97438 * 9 7 6 33 33 H 1.09000 * 109.47198 * 299.99855 * 9 7 6 34 34 H 1.08999 * 109.46954 * 60.00347 * 9 7 6 35 35 H 0.97008 * 119.99731 * 179.97438 * 13 12 10 36 36 H 1.08005 * 120.85702 * 0.02562 * 19 18 4 37 37 H 1.08000 * 120.34087 * 179.80586 * 20 19 18 38 38 H 1.07994 * 119.44836 * 180.23102 * 21 20 19 39 39 H 1.07994 * 119.72268 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5421 1.4441 0.1226 5 7 4.0975 1.3754 1.2931 6 7 3.3040 1.3992 2.4475 7 6 3.9346 1.4386 3.7692 8 1 4.8984 0.9311 3.7272 9 6 4.1429 2.8943 4.1917 10 6 3.0460 0.7470 4.7707 11 1 2.1056 0.3204 4.4542 12 6 3.4338 0.6580 6.0908 13 7 4.5791 1.1771 6.4760 14 14 2.3319 -0.1986 7.3323 15 1 1.1085 -0.6925 6.6505 16 1 3.0604 -1.3449 7.9327 17 1 1.9510 0.7601 8.4005 18 6 4.3807 1.5239 -1.0881 19 6 5.7782 1.5215 -0.9884 20 6 6.5186 1.6028 -2.1540 21 6 5.8623 1.6732 -3.3700 22 7 4.5448 1.6691 -3.4346 23 6 3.7955 1.5979 -2.3539 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6062 1.9813 0.8423 30 1 1.7509 1.9301 -0.9310 31 1 2.3371 1.3896 2.3716 32 1 4.6117 2.9236 5.1753 33 1 4.7857 3.3945 3.4674 34 1 3.1792 3.4018 4.2338 35 1 4.8518 1.1148 7.4049 36 1 6.2648 1.4609 -0.0261 37 1 7.5979 1.6067 -2.1155 38 1 6.4384 1.7329 -4.2815 39 1 2.7196 1.5967 -2.4474 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814883436.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:07 Heat of formation + Delta-G solvation = 42.554490 kcal Electronic energy + Delta-G solvation = -19108.804628 eV Core-core repulsion = 16244.006531 eV Total energy + Delta-G solvation = -2864.798097 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.01449 -38.85156 -36.62522 -34.76977 -33.87404 -32.82965 -31.96250 -29.13846 -27.98057 -27.26661 -24.80436 -24.18003 -22.61147 -22.39264 -20.52708 -18.88456 -18.03712 -17.53017 -17.06488 -16.48975 -16.17624 -15.75208 -15.28000 -15.13519 -14.59956 -14.50954 -14.41129 -14.00767 -13.93334 -13.45593 -13.08590 -12.97271 -12.85683 -12.74375 -12.51302 -12.50097 -12.27560 -12.13289 -11.82453 -11.61996 -11.14854 -10.78120 -10.72922 -10.57952 -10.40399 -10.11322 -8.40457 -8.18368 -6.36131 -0.09736 0.37560 1.40636 1.42006 1.53482 1.67075 2.16604 2.46050 3.02875 3.09905 3.47724 3.74462 3.96541 4.03680 4.08585 4.16493 4.17761 4.30087 4.56378 4.61223 4.69970 4.74126 4.83099 4.91743 4.96206 4.97896 5.10288 5.15893 5.19277 5.25123 5.37135 5.42252 5.45431 5.55329 5.76560 5.82651 5.87298 6.17424 6.39955 6.83192 7.05185 7.35563 7.75438 8.85763 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.023103 B = 0.004776 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.681153 B = 5861.133371 C = 6771.352494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.113 4.113 3 C -0.099 4.099 4 C 0.048 3.952 5 N -0.238 5.238 6 N -0.631 5.631 7 C 0.307 3.693 8 H 0.001 0.999 9 C -0.135 4.135 10 C -0.545 4.545 11 H 0.059 0.941 12 C 0.021 3.979 13 N -0.914 5.914 14 Si 0.968 3.032 15 H -0.267 1.267 16 H -0.280 1.280 17 H -0.276 1.276 18 C -0.075 4.075 19 C -0.075 4.075 20 C -0.165 4.165 21 C 0.089 3.911 22 N -0.500 5.500 23 C 0.107 3.893 24 H 0.059 0.941 25 H 0.048 0.952 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.032 0.968 29 H 0.060 0.940 30 H 0.105 0.895 31 H 0.375 0.625 32 H 0.069 0.931 33 H 0.017 0.983 34 H 0.029 0.971 35 H 0.267 0.733 36 H 0.125 0.875 37 H 0.162 0.838 38 H 0.187 0.813 39 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.504 0.425 -16.696 16.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.152 4.152 3 C -0.139 4.139 4 C -0.141 4.141 5 N -0.048 5.048 6 N -0.368 5.368 7 C 0.203 3.797 8 H 0.019 0.981 9 C -0.194 4.194 10 C -0.584 4.584 11 H 0.077 0.923 12 C -0.180 4.180 13 N -0.552 5.552 14 Si 0.793 3.207 15 H -0.191 1.191 16 H -0.206 1.206 17 H -0.202 1.202 18 C -0.079 4.079 19 C -0.103 4.103 20 C -0.184 4.184 21 C -0.068 4.068 22 N -0.208 5.208 23 C -0.052 4.052 24 H 0.079 0.921 25 H 0.067 0.933 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.051 0.949 29 H 0.079 0.921 30 H 0.123 0.877 31 H 0.213 0.787 32 H 0.087 0.913 33 H 0.036 0.964 34 H 0.048 0.952 35 H 0.076 0.924 36 H 0.143 0.857 37 H 0.180 0.820 38 H 0.204 0.796 39 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -1.828 0.434 -16.619 16.725 hybrid contribution -0.845 -0.411 1.805 2.035 sum -2.673 0.022 -14.814 15.053 Atomic orbital electron populations 1.21748 0.93882 1.02299 1.02465 1.21395 0.97130 0.95135 1.01494 1.20925 0.90591 0.98392 1.03995 1.22737 0.94377 1.06764 0.90239 1.74012 1.27656 1.08224 0.94928 1.48502 1.05199 1.82389 1.00753 1.18125 0.92479 0.92452 0.76664 0.98131 1.22010 0.98623 0.97721 1.01060 1.21519 1.05926 1.37263 0.93731 0.92263 1.25671 0.96554 0.95855 0.99887 1.70019 1.22125 1.45299 1.17762 0.85359 0.78729 0.78138 0.78489 1.19132 1.20601 1.20151 1.19385 0.93370 1.02553 0.92572 1.21917 0.93434 0.95020 0.99934 1.22368 1.02729 1.00911 0.92426 1.23325 0.90249 0.94552 0.98692 1.67713 1.07947 1.12960 1.32179 1.23121 1.01040 0.95125 0.85933 0.92143 0.93324 0.90618 0.90826 0.94887 0.92118 0.87694 0.78661 0.91255 0.96418 0.95159 0.92418 0.85688 0.82050 0.79635 0.80681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 9.91 71.98 0.71 -2.28 16 2 C -0.11 -2.85 5.91 30.59 0.18 -2.66 16 3 C -0.10 -2.62 4.43 29.85 0.13 -2.49 16 4 C 0.05 1.58 6.36 45.31 0.29 1.87 16 5 N -0.24 -9.74 10.69 -42.81 -0.46 -10.20 16 6 N -0.63 -28.20 5.94 -172.52 -1.03 -29.22 16 7 C 0.31 16.02 3.23 44.25 0.14 16.17 16 8 H 0.00 0.05 8.14 -2.38 -0.02 0.03 16 9 C -0.13 -6.78 9.29 71.98 0.67 -6.11 16 10 C -0.55 -29.61 8.74 25.60 0.22 -29.38 16 11 H 0.06 3.14 7.79 -2.91 -0.02 3.12 16 12 C 0.02 1.12 5.30 84.65 0.45 1.56 16 13 N -0.91 -51.55 11.32 21.45 0.24 -51.31 16 14 Si 0.97 42.45 29.54 68.60 2.03 44.48 16 15 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 16 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 17 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 18 C -0.07 -2.14 5.89 -20.04 -0.12 -2.25 16 19 C -0.07 -2.09 9.70 22.74 0.22 -1.87 16 20 C -0.16 -3.45 10.10 22.32 0.23 -3.22 16 21 C 0.09 1.77 11.17 84.71 0.95 2.71 16 22 N -0.50 -11.95 10.35 -194.66 -2.01 -13.96 16 23 C 0.11 2.60 10.55 85.05 0.90 3.50 16 24 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 26 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 29 H 0.06 1.76 6.52 -2.39 -0.02 1.74 16 30 H 0.10 2.11 6.24 -2.39 -0.01 2.10 16 31 H 0.37 15.66 6.44 -213.33 -1.37 14.28 16 32 H 0.07 3.77 6.07 -2.39 -0.01 3.75 16 33 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.27 14.16 8.31 -92.70 -0.77 13.39 16 36 H 0.13 3.88 7.65 -2.91 -0.02 3.86 16 37 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 38 H 0.19 2.29 8.06 -2.91 -0.02 2.26 16 39 H 0.18 3.36 6.27 -2.91 -0.02 3.35 16 Total: -1.00 -62.70 326.26 3.41 -59.29 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: -0.33 Total: 25.39 kcal Atomic # 6 Polarization: -29.44 SS G_CDS: 4.97 Total: -24.47 kcal Atomic # 7 Polarization: -101.43 SS G_CDS: -3.25 Total: -104.69 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -62.70 3.41 -59.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814883436.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.843 kcal (2) G-P(sol) polarization free energy of solvation -62.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds