Wall clock time and date at job start Mon Mar 30 2020 06:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29739 * 120.00044 * 2 1 4 4 N 1.40106 * 119.99969 * 359.97438 * 3 2 1 5 5 C 1.46499 * 120.00037 * 180.02562 * 4 3 2 6 6 H 1.09008 * 109.47349 * 30.00397 * 5 4 3 7 7 C 1.53002 * 109.47316 * 270.00344 * 5 4 3 8 8 C 1.50700 * 109.47002 * 150.00044 * 5 4 3 9 9 H 1.07993 * 120.00293 * 0.02562 * 8 5 4 10 10 C 1.37876 * 119.99757 * 179.97438 * 8 5 4 11 11 N 1.31514 * 120.00198 * 0.02562 * 10 8 5 12 12 Si 1.86801 * 119.99965 * 180.02562 * 10 8 5 13 13 H 1.48506 * 109.46916 * 59.99849 * 12 10 8 14 14 H 1.48500 * 109.47119 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47186 * 300.00220 * 12 10 8 16 16 C 1.47500 * 120.00301 * 180.02562 * 2 1 3 17 17 C 1.40101 * 120.56928 * 245.62662 * 16 2 1 18 18 C 1.38335 * 118.28250 * 179.97438 * 17 16 2 19 19 C 1.38360 * 119.31684 * 0.02562 * 18 17 16 20 20 C 1.50694 * 119.44668 * 179.97438 * 19 18 17 21 21 N 1.31918 * 121.10675 * 359.97436 * 19 18 17 22 22 C 1.31692 * 121.88923 * 359.97438 * 21 19 18 23 23 C 1.50697 * 119.72893 * 180.02562 * 22 21 19 24 24 H 1.09000 * 109.47244 * 269.99725 * 1 2 3 25 25 H 1.09000 * 109.47254 * 30.00323 * 1 2 3 26 26 H 1.09003 * 109.47366 * 150.00130 * 1 2 3 27 27 H 0.97000 * 119.99770 * 0.02562 * 4 3 2 28 28 H 1.08995 * 109.46801 * 299.99986 * 7 5 4 29 29 H 1.09003 * 109.46952 * 60.00077 * 7 5 4 30 30 H 1.08997 * 109.47106 * 179.97438 * 7 5 4 31 31 H 0.97004 * 120.00047 * 179.97438 * 11 10 8 32 32 H 1.08006 * 120.86027 * 359.97438 * 17 16 2 33 33 H 1.08000 * 120.34219 * 180.02562 * 18 17 16 34 34 H 1.09001 * 109.47090 * 269.97656 * 20 19 18 35 35 H 1.09003 * 109.47481 * 29.97491 * 20 19 18 36 36 H 1.09006 * 109.47525 * 149.97761 * 20 19 18 37 37 H 1.09002 * 109.47144 * 95.24255 * 23 22 21 38 38 H 1.08999 * 109.47491 * 215.24672 * 23 22 21 39 39 H 1.09006 * 109.47035 * 335.24775 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1556 1.1236 0.0000 4 7 1.4551 2.3369 -0.0005 5 6 2.1876 3.6056 -0.0011 6 1 3.1401 3.4751 -0.5150 7 6 2.4427 4.0480 1.4412 8 6 1.3731 4.6556 -0.7120 9 1 0.4064 4.4032 -1.1219 10 6 1.8617 5.9387 -0.8380 11 7 3.0388 6.2462 -0.3384 12 14 0.8519 7.2403 -1.7186 13 1 -0.4457 7.4177 -1.0184 14 1 1.5939 8.5267 -1.7182 15 1 0.6042 6.8116 -3.1186 16 6 2.2445 -1.2773 -0.0006 17 6 3.0319 -1.6460 1.0980 18 6 3.7029 -2.8546 1.0475 19 6 3.5769 -3.6529 -0.0755 20 6 4.3071 -4.9699 -0.1340 21 7 2.8283 -3.2806 -1.0959 22 6 2.1692 -2.1405 -1.0958 23 6 1.3276 -1.7637 -2.2877 24 1 -0.3634 0.0000 1.0276 25 1 -0.3634 0.8899 -0.5139 26 1 -0.3634 -0.8900 -0.5138 27 1 0.4851 2.3369 -0.0005 28 1 1.4903 4.1785 1.9550 29 1 3.0318 3.2885 1.9553 30 1 2.9881 4.9917 1.4407 31 1 3.3827 7.1488 -0.4274 32 1 3.1129 -1.0031 1.9622 33 1 4.3188 -3.1718 1.8760 34 1 5.2936 -4.8192 -0.5724 35 1 4.4148 -5.3708 0.8739 36 1 3.7411 -5.6724 -0.7459 37 1 0.2935 -2.0592 -2.1103 38 1 1.3762 -0.6856 -2.4406 39 1 1.7042 -2.2738 -3.1743 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814883648.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:14 Heat of formation + Delta-G solvation = 60.891166 kcal Electronic energy + Delta-G solvation = -18941.632430 eV Core-core repulsion = 16077.629470 eV Total energy + Delta-G solvation = -2864.002959 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.21798 -37.07742 -34.72907 -33.39609 -32.61611 -31.22299 -29.33709 -28.34023 -27.30222 -26.00584 -25.17505 -22.46713 -21.94111 -20.49550 -19.13837 -17.12800 -16.42633 -15.74572 -15.28985 -15.09391 -14.66148 -14.51941 -13.81216 -13.55571 -13.28811 -13.07040 -12.95467 -12.60721 -12.26957 -12.14772 -12.09037 -11.94798 -11.82663 -11.36862 -11.32565 -11.03946 -10.83759 -10.43399 -10.25211 -10.16387 -9.73474 -9.47811 -9.35435 -9.02029 -8.55620 -8.47129 -6.90837 -6.15245 -4.23766 1.11068 1.41509 2.78268 3.24205 3.29114 3.30468 3.69919 3.96766 4.26714 4.36508 4.78996 4.92195 4.94473 5.16056 5.17216 5.45668 5.48739 5.51051 5.54537 5.61790 5.67380 5.77504 5.81535 5.83929 5.95626 6.17637 6.19936 6.36151 6.49764 6.70437 6.84233 6.97622 6.98029 7.13855 7.55720 7.76056 7.84373 8.11490 8.14073 8.29418 8.83759 9.32358 9.43243 10.90653 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.034166 B = 0.003930 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.332586 B = 7122.628614 C = 7433.017360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.012 3.988 3 N -0.188 5.188 4 N -0.625 5.625 5 C 0.297 3.703 6 H 0.041 0.959 7 C -0.149 4.149 8 C -0.531 4.531 9 H 0.059 0.941 10 C 0.067 3.933 11 N -0.886 5.886 12 Si 0.903 3.097 13 H -0.276 1.276 14 H -0.285 1.285 15 H -0.276 1.276 16 C -0.051 4.051 17 C -0.051 4.051 18 C -0.179 4.179 19 C 0.119 3.881 20 C -0.100 4.100 21 N -0.486 5.486 22 C 0.146 3.854 23 C -0.102 4.102 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.370 0.630 28 H 0.025 0.975 29 H 0.011 0.989 30 H 0.090 0.910 31 H 0.265 0.735 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.568 -17.151 1.832 17.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.180 4.180 3 N -0.001 5.001 4 N -0.363 5.363 5 C 0.195 3.805 6 H 0.058 0.942 7 C -0.209 4.209 8 C -0.571 4.571 9 H 0.077 0.923 10 C -0.136 4.136 11 N -0.524 5.524 12 Si 0.730 3.270 13 H -0.202 1.202 14 H -0.211 1.211 15 H -0.201 1.201 16 C -0.055 4.055 17 C -0.078 4.078 18 C -0.199 4.199 19 C -0.019 4.019 20 C -0.158 4.158 21 N -0.197 5.197 22 C 0.006 3.994 23 C -0.159 4.159 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.208 0.792 28 H 0.044 0.956 29 H 0.031 0.969 30 H 0.108 0.892 31 H 0.075 0.925 32 H 0.152 0.848 33 H 0.150 0.850 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.467 -16.909 1.128 16.953 hybrid contribution -1.582 1.224 0.439 2.048 sum -2.049 -15.685 1.567 15.896 Atomic orbital electron populations 1.20989 0.92930 1.02673 1.02125 1.21988 0.92625 0.90475 1.12867 1.74211 1.28292 0.92988 1.04634 1.49065 1.06202 1.00203 1.80793 1.18520 0.92737 0.76335 0.92907 0.94158 1.22199 0.99158 1.01754 0.97765 1.21192 1.04526 0.94448 1.36902 0.92287 1.24856 0.95121 0.98223 0.95389 1.69880 1.17396 1.20429 1.44651 0.86490 0.79980 0.80432 0.80101 1.20167 1.21070 1.20145 1.18997 0.98215 0.93634 0.94650 1.21761 0.93189 0.95135 0.97744 1.21810 1.02470 0.95797 0.99801 1.21217 0.94479 0.96552 0.89628 1.20670 0.99718 0.92647 1.02730 1.67270 1.07997 1.16583 1.27827 1.21374 0.94534 0.89110 0.94388 1.20732 0.98164 1.02513 0.94501 0.91703 0.91654 0.91401 0.79237 0.95555 0.96950 0.89181 0.92493 0.84806 0.85042 0.90646 0.90969 0.90739 0.90518 0.90239 0.90756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.80 9.23 36.00 0.33 -1.46 16 2 C 0.01 0.20 5.35 -79.71 -0.43 -0.23 16 3 N -0.19 -3.87 11.48 35.11 0.40 -3.47 16 4 N -0.62 -13.74 5.95 -5.88 -0.03 -13.78 16 5 C 0.30 7.58 3.23 -69.08 -0.22 7.36 16 6 H 0.04 1.15 8.14 -51.92 -0.42 0.73 16 7 C -0.15 -3.68 9.29 37.16 0.35 -3.33 16 8 C -0.53 -14.23 8.74 -34.44 -0.30 -14.53 16 9 H 0.06 1.54 7.78 -52.49 -0.41 1.13 16 10 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 11 N -0.89 -24.69 11.32 55.43 0.63 -24.06 16 12 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 13 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 14 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 16 C -0.05 -0.79 5.55 -104.90 -0.58 -1.37 16 17 C -0.05 -0.73 9.94 -38.85 -0.39 -1.11 16 18 C -0.18 -2.18 9.72 -39.50 -0.38 -2.56 16 19 C 0.12 1.51 6.78 -82.51 -0.56 0.95 16 20 C -0.10 -0.89 10.16 36.00 0.37 -0.53 16 21 N -0.49 -7.13 10.17 -5.39 -0.05 -7.18 16 22 C 0.15 2.17 6.80 -82.13 -0.56 1.61 16 23 C -0.10 -1.30 8.81 36.00 0.32 -0.98 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.06 0.95 6.35 -51.93 -0.33 0.62 16 26 H 0.07 0.81 6.49 -51.93 -0.34 0.47 16 27 H 0.37 7.53 6.36 -182.59 -1.16 6.37 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 31 H 0.27 7.02 8.31 -40.82 -0.34 6.69 16 32 H 0.13 1.80 8.06 -52.48 -0.42 1.38 16 33 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.49 8.07 -51.93 -0.42 0.07 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.83 7.31 -51.93 -0.38 0.45 16 38 H 0.08 1.10 7.27 -51.93 -0.38 0.73 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 325.82 15.07 4.91 4.91 Total: -1.00 -29.37 325.82 -7.99 -37.36 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -6.67 Total: 5.03 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -2.16 Total: -14.49 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: 0.94 Total: -48.49 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.37 -7.99 -37.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814883648.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.252 kcal (2) G-P(sol) polarization free energy of solvation -29.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds