Wall clock time and date at job start Mon Mar 30 2020 06:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29739 * 120.00044 * 2 1 4 4 N 1.40106 * 119.99969 * 359.97438 * 3 2 1 5 5 C 1.46499 * 120.00037 * 180.02562 * 4 3 2 6 6 H 1.09008 * 109.47349 * 30.00397 * 5 4 3 7 7 C 1.53002 * 109.47316 * 270.00344 * 5 4 3 8 8 C 1.50700 * 109.47002 * 150.00044 * 5 4 3 9 9 H 1.07993 * 120.00293 * 0.02562 * 8 5 4 10 10 C 1.37876 * 119.99757 * 179.97438 * 8 5 4 11 11 N 1.31514 * 120.00198 * 0.02562 * 10 8 5 12 12 Si 1.86801 * 119.99965 * 180.02562 * 10 8 5 13 13 H 1.48506 * 109.46916 * 59.99849 * 12 10 8 14 14 H 1.48500 * 109.47119 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47186 * 300.00220 * 12 10 8 16 16 C 1.47500 * 120.00301 * 180.02562 * 2 1 3 17 17 C 1.40101 * 120.56928 * 245.62662 * 16 2 1 18 18 C 1.38335 * 118.28250 * 179.97438 * 17 16 2 19 19 C 1.38360 * 119.31684 * 0.02562 * 18 17 16 20 20 C 1.50694 * 119.44668 * 179.97438 * 19 18 17 21 21 N 1.31918 * 121.10675 * 359.97436 * 19 18 17 22 22 C 1.31692 * 121.88923 * 359.97438 * 21 19 18 23 23 C 1.50697 * 119.72893 * 180.02562 * 22 21 19 24 24 H 1.09000 * 109.47244 * 269.99725 * 1 2 3 25 25 H 1.09000 * 109.47254 * 30.00323 * 1 2 3 26 26 H 1.09003 * 109.47366 * 150.00130 * 1 2 3 27 27 H 0.97000 * 119.99770 * 0.02562 * 4 3 2 28 28 H 1.08995 * 109.46801 * 299.99986 * 7 5 4 29 29 H 1.09003 * 109.46952 * 60.00077 * 7 5 4 30 30 H 1.08997 * 109.47106 * 179.97438 * 7 5 4 31 31 H 0.97004 * 120.00047 * 179.97438 * 11 10 8 32 32 H 1.08006 * 120.86027 * 359.97438 * 17 16 2 33 33 H 1.08000 * 120.34219 * 180.02562 * 18 17 16 34 34 H 1.09001 * 109.47090 * 269.97656 * 20 19 18 35 35 H 1.09003 * 109.47481 * 29.97491 * 20 19 18 36 36 H 1.09006 * 109.47525 * 149.97761 * 20 19 18 37 37 H 1.09002 * 109.47144 * 95.24255 * 23 22 21 38 38 H 1.08999 * 109.47491 * 215.24672 * 23 22 21 39 39 H 1.09006 * 109.47035 * 335.24775 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1556 1.1236 0.0000 4 7 1.4551 2.3369 -0.0005 5 6 2.1876 3.6056 -0.0011 6 1 3.1401 3.4751 -0.5150 7 6 2.4427 4.0480 1.4412 8 6 1.3731 4.6556 -0.7120 9 1 0.4064 4.4032 -1.1219 10 6 1.8617 5.9387 -0.8380 11 7 3.0388 6.2462 -0.3384 12 14 0.8519 7.2403 -1.7186 13 1 -0.4457 7.4177 -1.0184 14 1 1.5939 8.5267 -1.7182 15 1 0.6042 6.8116 -3.1186 16 6 2.2445 -1.2773 -0.0006 17 6 3.0319 -1.6460 1.0980 18 6 3.7029 -2.8546 1.0475 19 6 3.5769 -3.6529 -0.0755 20 6 4.3071 -4.9699 -0.1340 21 7 2.8283 -3.2806 -1.0959 22 6 2.1692 -2.1405 -1.0958 23 6 1.3276 -1.7637 -2.2877 24 1 -0.3634 0.0000 1.0276 25 1 -0.3634 0.8899 -0.5139 26 1 -0.3634 -0.8900 -0.5138 27 1 0.4851 2.3369 -0.0005 28 1 1.4903 4.1785 1.9550 29 1 3.0318 3.2885 1.9553 30 1 2.9881 4.9917 1.4407 31 1 3.3827 7.1488 -0.4274 32 1 3.1129 -1.0031 1.9622 33 1 4.3188 -3.1718 1.8760 34 1 5.2936 -4.8192 -0.5724 35 1 4.4148 -5.3708 0.8739 36 1 3.7411 -5.6724 -0.7459 37 1 0.2935 -2.0592 -2.1103 38 1 1.3762 -0.6856 -2.4406 39 1 1.7042 -2.2738 -3.1743 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814883648.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:14 Heat of formation + Delta-G solvation = 43.459090 kcal Electronic energy + Delta-G solvation = -18942.388341 eV Core-core repulsion = 16077.629470 eV Total energy + Delta-G solvation = -2864.758871 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.29373 -38.56472 -36.42895 -34.66062 -33.90678 -32.80960 -30.57889 -29.55790 -28.58451 -27.45331 -27.08922 -23.55347 -23.10183 -22.23822 -20.59303 -18.82001 -17.55906 -17.35940 -16.87218 -16.40215 -15.95760 -15.62336 -15.31679 -14.79298 -14.57863 -14.28914 -14.14654 -14.01164 -13.80051 -13.22010 -13.19297 -13.11082 -12.92284 -12.88232 -12.77440 -12.74030 -12.40949 -12.30670 -12.12828 -11.91071 -11.21763 -10.90399 -10.64647 -10.57846 -10.44232 -9.59452 -8.53730 -8.18084 -6.35416 0.02172 0.33634 1.39780 1.43135 1.44635 1.52438 2.20187 2.47355 2.80968 3.10816 3.29832 3.69719 3.83830 3.88839 4.20042 4.31837 4.46512 4.52556 4.62543 4.65974 4.72387 4.73028 4.79516 4.83042 4.86906 4.95994 5.05979 5.11005 5.13104 5.24685 5.28128 5.36524 5.40632 5.54945 5.77760 5.82661 5.87766 6.18166 6.42259 6.84678 7.05831 7.36382 7.79980 8.86803 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.034166 B = 0.003930 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.332586 B = 7122.628614 C = 7433.017360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.055 3.945 3 N -0.243 5.243 4 N -0.639 5.639 5 C 0.308 3.692 6 H -0.003 1.003 7 C -0.135 4.135 8 C -0.548 4.548 9 H 0.062 0.938 10 C 0.019 3.981 11 N -0.915 5.915 12 Si 0.970 3.030 13 H -0.267 1.267 14 H -0.282 1.282 15 H -0.273 1.273 16 C -0.085 4.085 17 C -0.060 4.060 18 C -0.174 4.174 19 C 0.116 3.884 20 C -0.098 4.098 21 N -0.504 5.504 22 C 0.138 3.862 23 C -0.100 4.100 24 H 0.079 0.921 25 H 0.059 0.941 26 H 0.093 0.907 27 H 0.375 0.625 28 H 0.031 0.969 29 H 0.016 0.984 30 H 0.068 0.932 31 H 0.267 0.733 32 H 0.135 0.865 33 H 0.166 0.834 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.062 0.938 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.344 -19.069 1.961 19.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.138 4.138 3 N -0.053 5.053 4 N -0.378 5.378 5 C 0.204 3.796 6 H 0.014 0.986 7 C -0.194 4.194 8 C -0.587 4.587 9 H 0.080 0.920 10 C -0.181 4.181 11 N -0.553 5.553 12 Si 0.794 3.206 13 H -0.192 1.192 14 H -0.207 1.207 15 H -0.198 1.198 16 C -0.089 4.089 17 C -0.087 4.087 18 C -0.194 4.194 19 C -0.022 4.022 20 C -0.155 4.155 21 N -0.214 5.214 22 C -0.001 4.001 23 C -0.157 4.157 24 H 0.097 0.903 25 H 0.078 0.922 26 H 0.111 0.889 27 H 0.214 0.786 28 H 0.050 0.950 29 H 0.035 0.965 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.153 0.847 33 H 0.183 0.817 34 H 0.104 0.896 35 H 0.117 0.883 36 H 0.095 0.905 37 H 0.116 0.884 38 H 0.081 0.919 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.251 -18.845 1.260 18.928 hybrid contribution -1.280 1.514 0.420 2.026 sum -2.531 -17.331 1.680 17.595 Atomic orbital electron populations 1.21094 0.90933 1.03624 1.03319 1.22600 0.94300 0.90050 1.06827 1.74239 1.29045 0.93290 1.08696 1.48494 1.05913 0.99884 1.83502 1.18086 0.91055 0.78007 0.92462 0.98553 1.22009 0.99036 1.00661 0.97717 1.21499 1.04797 0.95196 1.37255 0.92014 1.25714 0.96134 1.00291 0.95995 1.70015 1.18831 1.20905 1.45578 0.85436 0.78648 0.77590 0.78893 1.19155 1.20697 1.19774 1.19102 1.00155 0.93434 0.96205 1.21921 0.93081 0.96164 0.97495 1.22154 1.01891 0.94653 1.00663 1.21943 0.93450 0.97790 0.89009 1.20790 0.99522 0.90591 1.04636 1.67369 1.08760 1.16508 1.28811 1.21583 0.94796 0.89165 0.94579 1.20749 0.99262 1.01434 0.94248 0.90259 0.92173 0.88868 0.78605 0.95030 0.96456 0.91340 0.92410 0.84672 0.81679 0.89648 0.88286 0.90548 0.88375 0.91882 0.90044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.50 9.23 71.23 0.66 -2.84 16 2 C 0.06 1.84 5.35 45.31 0.24 2.08 16 3 N -0.24 -10.22 11.48 -42.82 -0.49 -10.71 16 4 N -0.64 -28.96 5.95 -172.51 -1.03 -29.98 16 5 C 0.31 16.34 3.23 44.25 0.14 16.48 16 6 H 0.00 -0.21 8.14 -2.38 -0.02 -0.23 16 7 C -0.13 -6.85 9.29 71.98 0.67 -6.19 16 8 C -0.55 -30.03 8.74 25.60 0.22 -29.80 16 9 H 0.06 3.26 7.78 -2.91 -0.02 3.23 16 10 C 0.02 1.03 5.30 84.65 0.45 1.48 16 11 N -0.92 -52.24 11.32 21.45 0.24 -52.00 16 12 Si 0.97 42.60 29.54 68.60 2.03 44.63 16 13 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 14 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 15 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 16 C -0.08 -2.57 5.55 -20.04 -0.11 -2.68 16 17 C -0.06 -1.62 9.94 22.75 0.23 -1.39 16 18 C -0.17 -3.79 9.72 22.32 0.22 -3.57 16 19 C 0.12 2.64 6.78 42.57 0.29 2.93 16 20 C -0.10 -1.42 10.16 71.23 0.72 -0.69 16 21 N -0.50 -13.86 10.17 -170.97 -1.74 -15.59 16 22 C 0.14 3.94 6.80 42.92 0.29 4.23 16 23 C -0.10 -2.43 8.81 71.24 0.63 -1.81 16 24 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.06 1.71 6.35 -2.39 -0.02 1.70 16 26 H 0.09 2.02 6.49 -2.39 -0.02 2.00 16 27 H 0.38 15.57 6.36 -213.32 -1.36 14.22 16 28 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.07 3.76 6.07 -2.39 -0.01 3.74 16 31 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 32 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 33 H 0.17 2.41 8.06 -2.91 -0.02 2.38 16 34 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.10 0.91 8.07 -2.39 -0.02 0.89 16 36 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 37 H 0.10 1.92 7.31 -2.39 -0.02 1.91 16 38 H 0.06 1.74 7.27 -2.39 -0.02 1.72 16 39 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 Total: -1.00 -64.84 325.82 3.35 -61.49 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: -0.31 Total: 23.93 kcal Atomic # 6 Polarization: -26.41 SS G_CDS: 4.65 Total: -21.76 kcal Atomic # 7 Polarization: -105.27 SS G_CDS: -3.01 Total: -108.29 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -64.84 3.35 -61.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814883648.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.952 kcal (2) G-P(sol) polarization free energy of solvation -64.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds