Wall clock time and date at job start Mon Mar 30 2020 06:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.46562 * 2 1 4 4 C 1.34778 * 120.00022 * 265.36621 * 3 2 1 5 5 O 1.21281 * 120.00289 * 183.95427 * 4 3 2 6 6 C 1.50702 * 119.99558 * 3.96307 * 4 3 2 7 7 H 1.08994 * 109.47635 * 37.71528 * 6 4 3 8 8 C 1.53002 * 109.46715 * 277.71537 * 6 4 3 9 9 C 1.50700 * 109.46829 * 157.72012 * 6 4 3 10 10 H 1.07999 * 120.00636 * 359.97438 * 9 6 4 11 11 C 1.37882 * 119.99866 * 179.97438 * 9 6 4 12 12 N 1.31518 * 119.99805 * 359.97438 * 11 9 6 13 13 Si 1.86799 * 120.00149 * 179.97438 * 11 9 6 14 14 H 1.48507 * 109.46954 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.46770 * 119.99757 * 13 11 9 16 16 H 1.48495 * 109.47415 * 240.00116 * 13 11 9 17 17 C 1.39923 * 120.00118 * 85.37234 * 3 2 1 18 18 C 1.38880 * 120.06952 * 173.15194 * 17 3 2 19 19 C 1.38113 * 119.92684 * 179.97438 * 18 17 3 20 20 C 1.38277 * 120.06990 * 0.25417 * 19 18 17 21 21 C 1.50707 * 119.92959 * 179.74667 * 20 19 18 22 22 C 1.38286 * 120.14491 * 359.48640 * 20 19 18 23 23 C 1.38111 * 120.06640 * 0.51647 * 22 20 19 24 24 H 1.09007 * 109.47243 * 299.99853 * 1 2 3 25 25 H 1.08998 * 109.47439 * 60.00106 * 1 2 3 26 26 H 1.09005 * 109.46661 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47209 * 240.00051 * 2 1 3 28 28 H 1.09004 * 109.47036 * 119.99314 * 2 1 3 29 29 H 1.08999 * 109.47088 * 292.96899 * 8 6 4 30 30 H 1.09001 * 109.47335 * 52.96965 * 8 6 4 31 31 H 1.09001 * 109.46658 * 172.97198 * 8 6 4 32 32 H 0.97005 * 119.99623 * 180.02562 * 12 11 9 33 33 H 1.07993 * 120.03536 * 359.95220 * 18 17 3 34 34 H 1.08002 * 119.96388 * 179.97438 * 19 18 17 35 35 H 1.09000 * 109.47102 * 89.99548 * 21 20 19 36 36 H 1.08993 * 109.47272 * 209.99965 * 21 20 19 37 37 H 1.09003 * 109.46526 * 330.00172 * 21 20 19 38 38 H 1.07998 * 119.96243 * 180.22996 * 22 20 19 39 39 H 1.07998 * 120.03333 * 179.76091 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3317 1.9853 -1.1634 5 8 2.8033 3.1026 -1.1588 6 6 2.0960 1.2721 -2.4699 7 1 1.1690 0.7019 -2.4106 8 6 3.2621 0.3221 -2.7499 9 6 1.9935 2.2833 -3.5827 10 1 2.0891 3.3369 -3.3655 11 6 1.7778 1.8632 -4.8781 12 7 1.6619 0.5802 -5.1427 13 14 1.6500 3.1166 -6.2573 14 1 1.8145 4.4835 -5.7008 15 1 2.7149 2.8594 -7.2599 16 1 0.3199 3.0031 -6.9077 17 6 2.1592 2.0735 1.2078 18 6 2.7537 3.3285 1.2253 19 6 2.8909 4.0094 2.4191 20 6 2.4418 3.4406 3.5967 21 6 2.5982 4.1839 4.8983 22 6 1.8445 2.1935 3.5819 23 6 1.7044 1.5074 2.3915 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 4.1670 0.9016 -2.9330 30 1 3.4154 -0.3287 -1.8890 31 1 3.0348 -0.2835 -3.6273 32 1 1.5105 0.2847 -6.0541 33 1 3.1087 3.7713 0.3065 34 1 3.3536 4.9852 2.4334 35 1 1.7166 4.8007 5.0727 36 1 2.7089 3.4693 5.7138 37 1 3.4824 4.8196 4.8496 38 1 1.4914 1.7536 4.5029 39 1 1.2413 0.5318 2.3812 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821426077.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:57 Heat of formation + Delta-G solvation = -5.748158 kcal Electronic energy + Delta-G solvation = -19845.434445 eV Core-core repulsion = 16946.249037 eV Total energy + Delta-G solvation = -2899.185408 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.39099 -38.17016 -35.73293 -34.04014 -32.13090 -30.69514 -30.36892 -29.80102 -26.25149 -25.29393 -23.68036 -22.68902 -22.00073 -20.72011 -18.86627 -17.08397 -16.41769 -15.97513 -15.23368 -14.82762 -14.74762 -14.26152 -13.99405 -13.57198 -13.29646 -13.15795 -12.99176 -12.64135 -12.56329 -12.11765 -11.87239 -11.79129 -11.56238 -11.26212 -11.04594 -10.98845 -10.78457 -10.72479 -10.47331 -10.30974 -10.04386 -9.63017 -9.05617 -8.60788 -8.52804 -8.22650 -7.36143 -6.11012 -4.14143 1.64437 1.76136 3.28349 3.34502 3.37394 3.45372 3.47104 4.18795 4.41040 4.99662 5.11733 5.15539 5.22974 5.27159 5.38151 5.46885 5.59306 5.62911 5.65478 5.77744 5.81736 5.94612 6.04313 6.09733 6.15125 6.38528 6.45478 6.54683 6.68379 6.72223 6.76716 6.86111 6.97143 7.00295 7.37563 7.60495 7.65898 7.86168 7.96439 8.22598 8.91182 9.00108 9.51072 10.97032 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.029409 B = 0.005340 C = 0.004793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.868415 B = 5242.331937 C = 5840.645655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.096 3.904 3 N -0.562 5.562 4 C 0.523 3.477 5 O -0.517 6.517 6 C 0.032 3.968 7 H 0.054 0.946 8 C -0.131 4.131 9 C -0.504 4.504 10 H 0.072 0.928 11 C 0.061 3.939 12 N -0.894 5.894 13 Si 0.900 3.100 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.284 1.284 17 C 0.165 3.835 18 C -0.173 4.173 19 C -0.098 4.098 20 C -0.133 4.133 21 C -0.105 4.105 22 C -0.100 4.100 23 C -0.169 4.169 24 H 0.055 0.945 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.101 0.899 28 H 0.075 0.925 29 H 0.038 0.962 30 H 0.013 0.987 31 H 0.093 0.907 32 H 0.261 0.739 33 H 0.185 0.815 34 H 0.117 0.883 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.116 0.884 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.577 -1.340 14.736 14.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.026 4.026 3 N -0.285 5.285 4 C 0.317 3.683 5 O -0.393 6.393 6 C 0.011 3.989 7 H 0.072 0.928 8 C -0.189 4.189 9 C -0.542 4.542 10 H 0.090 0.910 11 C -0.140 4.140 12 N -0.533 5.533 13 Si 0.728 3.272 14 H -0.195 1.195 15 H -0.209 1.209 16 H -0.210 1.210 17 C 0.069 3.931 18 C -0.192 4.192 19 C -0.117 4.117 20 C -0.134 4.134 21 C -0.162 4.162 22 C -0.118 4.118 23 C -0.190 4.190 24 H 0.074 0.926 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.119 0.881 28 H 0.093 0.907 29 H 0.057 0.943 30 H 0.032 0.968 31 H 0.111 0.889 32 H 0.071 0.929 33 H 0.201 0.799 34 H 0.135 0.865 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.134 0.866 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.358 -0.912 14.458 14.491 hybrid contribution -0.224 0.405 -0.627 0.779 sum -0.583 -0.507 13.831 13.853 Atomic orbital electron populations 1.22224 0.95520 1.02302 1.03056 1.21801 0.95056 0.81760 1.04031 1.46087 1.63101 1.14206 1.05064 1.22384 0.74477 0.86059 0.85410 1.90149 1.43009 1.20183 1.85921 1.18962 0.97036 0.95622 0.87240 0.92847 1.21782 0.97742 0.98605 1.00793 1.21095 1.48996 0.93355 0.90749 0.91009 1.24923 0.94879 0.95476 0.98692 1.69886 1.49689 1.13547 1.20167 0.86391 0.77545 0.81738 0.81575 1.19540 1.20930 1.20993 1.18214 0.96502 0.92722 0.85689 1.22941 1.00313 0.94301 1.01634 1.21032 0.99441 0.99364 0.91830 1.19799 1.02314 0.95903 0.95364 1.20674 1.01633 0.99547 0.94328 1.20657 0.99626 0.94583 0.96982 1.20798 1.05415 1.01165 0.91653 0.92567 0.91254 0.91437 0.88053 0.90697 0.94268 0.96774 0.88857 0.92892 0.79904 0.86451 0.91939 0.92215 0.92082 0.86564 0.86017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.40 9.93 37.16 0.37 -2.03 16 2 C 0.10 1.46 5.00 -4.04 -0.02 1.44 16 3 N -0.56 -10.63 2.70 -113.45 -0.31 -10.93 16 4 C 0.52 11.94 6.75 -10.98 -0.07 11.86 16 5 O -0.52 -12.98 12.14 5.56 0.07 -12.91 16 6 C 0.03 0.78 1.79 -92.92 -0.17 0.62 16 7 H 0.05 1.30 6.33 -51.93 -0.33 0.97 16 8 C -0.13 -2.99 8.48 37.16 0.32 -2.67 16 9 C -0.50 -13.90 8.33 -34.44 -0.29 -14.19 16 10 H 0.07 2.09 6.97 -52.49 -0.37 1.73 16 11 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 12 N -0.89 -24.36 11.40 55.43 0.63 -23.73 16 13 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 14 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 C 0.16 2.98 6.48 -83.69 -0.54 2.44 16 18 C -0.17 -3.24 9.05 -39.39 -0.36 -3.60 16 19 C -0.10 -1.54 9.69 -39.61 -0.38 -1.92 16 20 C -0.13 -1.83 5.88 -104.59 -0.62 -2.45 16 21 C -0.11 -1.09 10.01 36.01 0.36 -0.72 16 22 C -0.10 -1.35 9.69 -39.61 -0.38 -1.74 16 23 C -0.17 -2.54 8.71 -39.39 -0.34 -2.88 16 24 H 0.06 0.74 7.17 -51.92 -0.37 0.37 16 25 H 0.07 1.12 7.37 -51.93 -0.38 0.74 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.10 1.61 4.78 -51.93 -0.25 1.37 16 28 H 0.07 0.95 6.79 -51.93 -0.35 0.60 16 29 H 0.04 0.92 8.13 -51.93 -0.42 0.50 16 30 H 0.01 0.26 6.52 -51.93 -0.34 -0.07 16 31 H 0.09 2.28 6.29 -51.93 -0.33 1.95 16 32 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 33 H 0.18 3.93 4.54 -56.19 -0.26 3.67 16 34 H 0.12 1.61 8.06 -52.49 -0.42 1.18 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 37 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 38 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 39 H 0.12 1.56 5.84 -52.49 -0.31 1.25 16 LS Contribution 309.80 15.07 4.67 4.67 Total: -1.00 -29.55 309.80 -7.55 -37.10 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -5.36 Total: 3.73 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: -2.22 Total: -14.28 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 0.33 Total: -34.66 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.07 Total: -12.91 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.55 -7.55 -37.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821426077.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.348 kcal (2) G-P(sol) polarization free energy of solvation -29.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds