Wall clock time and date at job start Mon Mar 30 2020 06:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.46562 * 2 1 4 4 C 1.34778 * 120.00022 * 265.36621 * 3 2 1 5 5 O 1.21281 * 120.00289 * 183.95427 * 4 3 2 6 6 C 1.50702 * 119.99558 * 3.96307 * 4 3 2 7 7 H 1.08994 * 109.47635 * 37.71528 * 6 4 3 8 8 C 1.53002 * 109.46715 * 277.71537 * 6 4 3 9 9 C 1.50700 * 109.46829 * 157.72012 * 6 4 3 10 10 H 1.07999 * 120.00636 * 359.97438 * 9 6 4 11 11 C 1.37882 * 119.99866 * 179.97438 * 9 6 4 12 12 N 1.31518 * 119.99805 * 359.97438 * 11 9 6 13 13 Si 1.86799 * 120.00149 * 179.97438 * 11 9 6 14 14 H 1.48507 * 109.46954 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.46770 * 119.99757 * 13 11 9 16 16 H 1.48495 * 109.47415 * 240.00116 * 13 11 9 17 17 C 1.39923 * 120.00118 * 85.37234 * 3 2 1 18 18 C 1.38880 * 120.06952 * 173.15194 * 17 3 2 19 19 C 1.38113 * 119.92684 * 179.97438 * 18 17 3 20 20 C 1.38277 * 120.06990 * 0.25417 * 19 18 17 21 21 C 1.50707 * 119.92959 * 179.74667 * 20 19 18 22 22 C 1.38286 * 120.14491 * 359.48640 * 20 19 18 23 23 C 1.38111 * 120.06640 * 0.51647 * 22 20 19 24 24 H 1.09007 * 109.47243 * 299.99853 * 1 2 3 25 25 H 1.08998 * 109.47439 * 60.00106 * 1 2 3 26 26 H 1.09005 * 109.46661 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47209 * 240.00051 * 2 1 3 28 28 H 1.09004 * 109.47036 * 119.99314 * 2 1 3 29 29 H 1.08999 * 109.47088 * 292.96899 * 8 6 4 30 30 H 1.09001 * 109.47335 * 52.96965 * 8 6 4 31 31 H 1.09001 * 109.46658 * 172.97198 * 8 6 4 32 32 H 0.97005 * 119.99623 * 180.02562 * 12 11 9 33 33 H 1.07993 * 120.03536 * 359.95220 * 18 17 3 34 34 H 1.08002 * 119.96388 * 179.97438 * 19 18 17 35 35 H 1.09000 * 109.47102 * 89.99548 * 21 20 19 36 36 H 1.08993 * 109.47272 * 209.99965 * 21 20 19 37 37 H 1.09003 * 109.46526 * 330.00172 * 21 20 19 38 38 H 1.07998 * 119.96243 * 180.22996 * 22 20 19 39 39 H 1.07998 * 120.03333 * 179.76091 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3317 1.9853 -1.1634 5 8 2.8033 3.1026 -1.1588 6 6 2.0960 1.2721 -2.4699 7 1 1.1690 0.7019 -2.4106 8 6 3.2621 0.3221 -2.7499 9 6 1.9935 2.2833 -3.5827 10 1 2.0891 3.3369 -3.3655 11 6 1.7778 1.8632 -4.8781 12 7 1.6619 0.5802 -5.1427 13 14 1.6500 3.1166 -6.2573 14 1 1.8145 4.4835 -5.7008 15 1 2.7149 2.8594 -7.2599 16 1 0.3199 3.0031 -6.9077 17 6 2.1592 2.0735 1.2078 18 6 2.7537 3.3285 1.2253 19 6 2.8909 4.0094 2.4191 20 6 2.4418 3.4406 3.5967 21 6 2.5982 4.1839 4.8983 22 6 1.8445 2.1935 3.5819 23 6 1.7044 1.5074 2.3915 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 4.1670 0.9016 -2.9330 30 1 3.4154 -0.3287 -1.8890 31 1 3.0348 -0.2835 -3.6273 32 1 1.5105 0.2847 -6.0541 33 1 3.1087 3.7713 0.3065 34 1 3.3536 4.9852 2.4334 35 1 1.7166 4.8007 5.0727 36 1 2.7089 3.4693 5.7138 37 1 3.4824 4.8196 4.8496 38 1 1.4914 1.7536 4.5029 39 1 1.2413 0.5318 2.3812 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821426077.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:57 Heat of formation + Delta-G solvation = -21.620082 kcal Electronic energy + Delta-G solvation = -19846.122704 eV Core-core repulsion = 16946.249037 eV Total energy + Delta-G solvation = -2899.873667 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.87197 -39.53152 -37.20671 -35.95853 -33.48801 -32.19854 -31.86227 -31.03427 -27.46011 -27.29756 -25.09696 -24.18222 -23.22457 -22.10399 -20.41967 -18.70808 -17.96290 -17.79658 -16.74596 -16.38948 -16.30331 -15.51297 -15.40791 -14.87156 -14.64772 -14.51909 -14.32314 -14.21849 -13.95235 -13.38193 -13.11600 -13.01549 -12.96231 -12.90033 -12.68088 -12.59462 -12.42223 -12.26153 -12.08846 -11.92448 -11.79027 -11.10112 -10.92059 -10.57266 -9.94448 -9.80872 -8.66968 -8.19514 -6.29299 0.39863 0.54562 1.37484 1.39920 1.52292 1.78640 1.97250 2.42495 2.94778 3.10994 3.73187 3.98255 4.08870 4.11073 4.28531 4.30873 4.43676 4.48952 4.58177 4.62209 4.67255 4.83674 4.86429 4.91156 4.93351 4.98457 5.01078 5.19276 5.21900 5.31171 5.36206 5.50063 5.54008 5.68097 5.76274 5.80636 5.87236 6.13078 6.27548 6.49980 6.75861 7.29551 7.39704 8.87149 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.029409 B = 0.005340 C = 0.004793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.868415 B = 5242.331937 C = 5840.645655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.088 3.912 3 N -0.557 5.557 4 C 0.517 3.483 5 O -0.555 6.555 6 C 0.033 3.967 7 H 0.050 0.950 8 C -0.118 4.118 9 C -0.532 4.532 10 H 0.044 0.956 11 C 0.025 3.975 12 N -0.906 5.906 13 Si 0.954 3.046 14 H -0.281 1.281 15 H -0.274 1.274 16 H -0.272 1.272 17 C 0.132 3.868 18 C -0.205 4.205 19 C -0.109 4.109 20 C -0.125 4.125 21 C -0.104 4.104 22 C -0.096 4.096 23 C -0.159 4.159 24 H 0.064 0.936 25 H 0.036 0.964 26 H 0.099 0.901 27 H 0.091 0.909 28 H 0.110 0.890 29 H 0.020 0.980 30 H 0.047 0.953 31 H 0.077 0.923 32 H 0.266 0.734 33 H 0.148 0.852 34 H 0.128 0.872 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.157 0.843 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.353 -2.495 17.454 17.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.033 4.033 3 N -0.279 5.279 4 C 0.310 3.690 5 O -0.434 6.434 6 C 0.012 3.988 7 H 0.068 0.932 8 C -0.176 4.176 9 C -0.570 4.570 10 H 0.062 0.938 11 C -0.174 4.174 12 N -0.545 5.545 13 Si 0.780 3.220 14 H -0.206 1.206 15 H -0.199 1.199 16 H -0.197 1.197 17 C 0.037 3.963 18 C -0.224 4.224 19 C -0.127 4.127 20 C -0.126 4.126 21 C -0.160 4.160 22 C -0.114 4.114 23 C -0.180 4.180 24 H 0.083 0.917 25 H 0.055 0.945 26 H 0.117 0.883 27 H 0.109 0.891 28 H 0.128 0.872 29 H 0.039 0.961 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.165 0.835 34 H 0.146 0.854 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.174 0.826 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.148 -2.101 17.210 17.375 hybrid contribution 0.009 0.780 -1.328 1.540 sum -1.139 -1.321 15.882 15.977 Atomic orbital electron populations 1.22171 0.94357 1.03973 1.01858 1.22092 0.96028 0.79922 1.05222 1.45948 1.62298 1.15304 1.04325 1.22056 0.74850 0.85697 0.86387 1.90184 1.44868 1.21557 1.86778 1.18844 0.97265 0.95139 0.87597 0.93188 1.21594 0.96255 0.98219 1.01495 1.21216 1.50253 0.92877 0.92639 0.93801 1.25532 0.94405 0.97216 1.00296 1.69945 1.49388 1.14351 1.20837 0.85563 0.78194 0.79134 0.79126 1.20636 1.19926 1.19700 1.18427 0.98563 0.93020 0.86263 1.22689 1.02436 0.95709 1.01590 1.21194 0.99946 0.99880 0.91723 1.20259 1.00231 0.96142 0.95980 1.20749 1.02538 1.00007 0.92743 1.21165 0.98235 0.94131 0.97889 1.21101 1.04123 1.02089 0.90658 0.91656 0.94489 0.88276 0.89090 0.87169 0.96108 0.93380 0.90458 0.92427 0.83487 0.85416 0.90711 0.89992 0.91439 0.82575 0.83345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.31 9.93 71.98 0.71 -3.59 16 2 C 0.09 2.55 5.00 86.38 0.43 2.98 16 3 N -0.56 -21.26 2.70 -631.24 -1.71 -22.96 16 4 C 0.52 24.80 6.75 87.66 0.59 25.39 16 5 O -0.55 -30.02 12.14 -3.03 -0.04 -30.06 16 6 C 0.03 1.65 1.79 -12.28 -0.02 1.63 16 7 H 0.05 2.53 6.33 -2.39 -0.02 2.51 16 8 C -0.12 -5.50 8.48 71.98 0.61 -4.89 16 9 C -0.53 -30.79 8.33 25.60 0.21 -30.58 16 10 H 0.04 2.73 6.97 -2.91 -0.02 2.71 16 11 C 0.03 1.41 5.30 84.66 0.45 1.86 16 12 N -0.91 -50.00 11.40 21.45 0.24 -49.76 16 13 Si 0.95 44.73 29.54 68.60 2.03 46.76 16 14 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 15 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 16 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 17 C 0.13 4.74 6.48 38.15 0.25 4.99 16 18 C -0.20 -7.97 9.05 22.39 0.20 -7.77 16 19 C -0.11 -3.38 9.69 22.25 0.22 -3.16 16 20 C -0.13 -3.09 5.88 -19.84 -0.12 -3.20 16 21 C -0.10 -1.72 10.01 71.24 0.71 -1.01 16 22 C -0.10 -2.20 9.69 22.25 0.22 -1.98 16 23 C -0.16 -4.29 8.71 22.39 0.19 -4.09 16 24 H 0.06 1.57 7.17 -2.38 -0.02 1.55 16 25 H 0.04 1.19 7.37 -2.39 -0.02 1.18 16 26 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 27 H 0.09 2.81 4.78 -2.39 -0.01 2.80 16 28 H 0.11 2.41 6.79 -2.38 -0.02 2.39 16 29 H 0.02 0.99 8.13 -2.39 -0.02 0.97 16 30 H 0.05 1.86 6.52 -2.39 -0.02 1.84 16 31 H 0.08 3.85 6.29 -2.39 -0.02 3.83 16 32 H 0.27 13.85 8.31 -92.70 -0.77 13.08 16 33 H 0.15 6.88 4.54 -61.56 -0.28 6.60 16 34 H 0.13 3.51 8.06 -2.91 -0.02 3.49 16 35 H 0.07 1.11 8.14 -2.39 -0.02 1.10 16 36 H 0.08 1.04 8.09 -2.39 -0.02 1.02 16 37 H 0.07 1.06 8.08 -2.39 -0.02 1.04 16 38 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 39 H 0.15 3.12 5.84 -2.91 -0.02 3.10 16 Total: -1.00 -67.89 309.80 5.97 -61.92 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: 0.78 Total: 17.53 kcal Atomic # 6 Polarization: -28.10 SS G_CDS: 4.66 Total: -23.44 kcal Atomic # 7 Polarization: -71.26 SS G_CDS: -1.46 Total: -72.72 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: -0.04 Total: -30.06 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -67.89 5.97 -61.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821426077.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.299 kcal (2) G-P(sol) polarization free energy of solvation -67.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds