Wall clock time and date at job start Mon Mar 30 2020 06:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.50699 * 109.47053 * 175.00035 * 4 2 1 6 6 H 1.08006 * 120.00127 * 359.97438 * 5 4 2 7 7 C 1.37874 * 119.99929 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00323 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00031 * 179.97438 * 7 5 4 10 10 H 1.48491 * 109.47133 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47166 * 120.00332 * 9 7 5 12 12 H 1.48501 * 109.46968 * 239.99912 * 9 7 5 13 13 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 14 14 C 1.39959 * 120.00108 * 275.00162 * 13 2 1 15 15 C 1.38572 * 119.95483 * 359.72080 * 14 13 2 16 16 C 1.38228 * 119.87547 * 179.77063 * 15 14 13 17 17 C 1.38104 * 120.03297 * 0.61276 * 16 15 14 18 18 C 1.38642 * 120.45604 * 359.72867 * 17 16 15 19 19 C 1.38158 * 119.87650 * 359.82156 * 18 17 16 20 20 O 1.35947 * 121.83290 * 180.60610 * 19 18 17 21 21 C 1.42820 * 117.86974 * 342.64154 * 20 19 18 22 22 C 1.53406 * 108.38320 * 49.10996 * 21 20 19 23 23 C 1.50779 * 118.72266 * 179.61094 * 18 17 16 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 1.08995 * 109.46750 * 294.99553 * 4 2 1 28 28 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 29 29 H 0.97000 * 120.00334 * 179.97438 * 8 7 5 30 30 H 0.97001 * 119.99547 * 95.00125 * 13 2 1 31 31 H 1.07998 * 120.06450 * 0.02944 * 15 14 13 32 32 H 1.07999 * 119.98456 * 180.35483 * 16 15 14 33 33 H 1.08005 * 119.77608 * 179.71394 * 17 16 15 34 34 H 1.09000 * 109.68229 * 289.38526 * 21 20 19 35 35 H 1.09003 * 109.71545 * 168.84588 * 21 20 19 36 36 H 1.08993 * 109.69940 * 175.68799 * 22 21 20 37 37 H 1.08996 * 109.73568 * 55.10183 * 22 21 20 38 38 H 1.08999 * 109.43674 * 282.15800 * 23 18 17 39 39 H 1.09006 * 109.43478 * 42.07530 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5419 -0.6148 -1.3128 6 1 4.0789 -0.0854 -0.5396 7 6 4.2304 -1.1933 -2.3579 8 7 3.5765 -1.8376 -3.2997 9 14 6.0920 -1.0609 -2.4369 10 1 6.5835 -0.2897 -1.2671 11 1 6.6863 -2.4217 -2.4185 12 1 6.4861 -0.3656 -3.6886 13 7 2.0184 -0.6906 1.1961 14 6 2.1521 0.0075 2.4018 15 6 1.8277 1.3534 2.4616 16 6 1.9558 2.0402 3.6543 17 6 2.4184 1.3888 4.7808 18 6 2.7519 0.0441 4.7278 19 6 2.6179 -0.6520 3.5419 20 8 2.9217 -1.9737 3.4480 21 6 3.7301 -2.5476 4.4760 22 6 3.1426 -2.1453 5.8348 23 6 3.2613 -0.6260 5.9787 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.7517 -1.7714 -1.2057 28 1 1.6054 -0.2616 -2.1371 29 1 4.0608 -2.2443 -4.0351 30 1 2.2491 -1.6318 1.1525 31 1 1.4714 1.8638 1.5790 32 1 1.6980 3.0878 3.7043 33 1 2.5213 1.9305 5.7094 34 1 4.7506 -2.1739 4.3921 35 1 3.7280 -3.6336 4.3823 36 1 3.6982 -2.6346 6.6347 37 1 2.0938 -2.4381 5.8835 38 1 4.3061 -0.3570 6.1345 39 1 2.6705 -0.2960 6.8333 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829172249.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:26 Heat of formation + Delta-G solvation = -30.882941 kcal Electronic energy + Delta-G solvation = -19746.145613 eV Core-core repulsion = 16845.870279 eV Total energy + Delta-G solvation = -2900.275334 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.34449 -37.62197 -36.08436 -33.99253 -32.60632 -30.89048 -30.25918 -27.50706 -27.34711 -25.48782 -23.52156 -23.20942 -21.41895 -20.46028 -19.05153 -17.42451 -16.87700 -16.27314 -15.88007 -15.10751 -14.78116 -14.42016 -14.16719 -13.89603 -13.69203 -13.26502 -13.13130 -12.84882 -12.40961 -12.13600 -11.81087 -11.62815 -11.49081 -11.30858 -11.22591 -10.77517 -10.76225 -10.60557 -10.54796 -10.32849 -10.13627 -9.52788 -9.31305 -9.00216 -8.39455 -7.97571 -6.53870 -6.01858 -4.03228 1.76561 2.03915 3.30458 3.38300 3.43952 3.61055 4.17650 4.25086 4.45965 4.72927 4.80952 4.88719 5.24092 5.31329 5.35124 5.49702 5.50729 5.60127 5.63367 5.77427 5.83122 5.91930 6.03416 6.05915 6.06653 6.18096 6.28055 6.46413 6.54878 6.70062 6.78547 6.86783 7.00166 7.20242 7.48368 7.58924 7.76639 7.96064 8.20777 8.38627 8.58850 9.03177 9.61121 11.09278 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.019024 B = 0.006031 C = 0.005303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.502130 B = 4641.319602 C = 5278.315095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.147 3.853 3 H 0.066 0.934 4 C 0.015 3.985 5 C -0.512 4.512 6 H 0.057 0.943 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.710 5.710 14 C 0.222 3.778 15 C -0.190 4.190 16 C -0.095 4.095 17 C -0.170 4.170 18 C -0.118 4.118 19 C 0.044 3.956 20 O -0.316 6.316 21 C 0.065 3.935 22 C -0.158 4.158 23 C -0.074 4.074 24 H 0.044 0.956 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.021 0.979 28 H 0.030 0.970 29 H 0.260 0.740 30 H 0.405 0.595 31 H 0.127 0.873 32 H 0.115 0.885 33 H 0.111 0.889 34 H 0.058 0.942 35 H 0.101 0.899 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.704 2.356 16.886 17.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.043 3.957 3 H 0.084 0.916 4 C -0.022 4.022 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 N -0.335 5.335 14 C 0.114 3.886 15 C -0.214 4.214 16 C -0.114 4.114 17 C -0.190 4.190 18 C -0.119 4.119 19 C -0.004 4.004 20 O -0.231 6.231 21 C -0.011 4.011 22 C -0.196 4.196 23 C -0.112 4.112 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.039 0.961 28 H 0.049 0.951 29 H 0.069 0.931 30 H 0.241 0.759 31 H 0.145 0.855 32 H 0.133 0.867 33 H 0.129 0.871 34 H 0.077 0.923 35 H 0.119 0.881 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.803 2.210 16.365 16.749 hybrid contribution 1.304 -0.257 0.028 1.329 sum -1.499 1.953 16.393 16.577 Atomic orbital electron populations 1.22294 0.97794 1.01527 1.00669 1.21198 0.91186 0.97081 0.86269 0.91552 1.19393 0.96319 0.95801 0.90671 1.21219 0.91809 1.34065 1.07929 0.92451 1.24996 0.98293 0.95367 0.95739 1.69966 1.35377 1.36134 1.12102 0.86563 0.86021 0.77725 0.77891 1.19789 1.21098 1.21063 1.44905 1.69954 1.12777 1.05874 1.17533 0.95058 0.91093 0.84903 1.20488 1.09540 0.92371 0.98992 1.20667 0.99348 0.98997 0.92424 1.20420 1.06587 0.93468 0.98570 1.19426 1.04199 0.94951 0.93344 1.18070 1.06026 0.83736 0.92587 1.85943 1.67801 1.20873 1.48456 1.22818 0.93568 0.98490 0.86199 1.22214 1.02579 0.96619 0.98166 1.20423 1.01199 0.94126 0.95405 0.93654 0.92977 0.92346 0.96083 0.95140 0.93084 0.75937 0.85534 0.86713 0.87100 0.92343 0.88090 0.90396 0.90672 0.90888 0.90507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 9.44 37.16 0.35 -2.51 16 2 C 0.15 3.01 2.21 -67.93 -0.15 2.86 16 3 H 0.07 1.37 6.47 -51.93 -0.34 1.04 16 4 C 0.02 0.39 4.52 -27.88 -0.13 0.26 16 5 C -0.51 -14.22 8.84 -34.44 -0.30 -14.53 16 6 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 7 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 8 N -0.90 -26.63 13.29 55.43 0.74 -25.89 16 9 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 10 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 N -0.71 -14.25 4.95 -51.96 -0.26 -14.51 16 14 C 0.22 4.15 6.66 -83.47 -0.56 3.59 16 15 C -0.19 -3.23 8.86 -39.46 -0.35 -3.58 16 16 C -0.10 -1.41 10.04 -39.63 -0.40 -1.80 16 17 C -0.17 -2.41 9.66 -39.48 -0.38 -2.79 16 18 C -0.12 -1.76 5.75 -104.46 -0.60 -2.36 16 19 C 0.04 0.77 6.49 -39.06 -0.25 0.51 16 20 O -0.32 -5.38 9.42 -19.57 -0.18 -5.57 16 21 C 0.06 0.82 7.03 37.37 0.26 1.08 16 22 C -0.16 -1.66 6.19 -26.48 -0.16 -1.82 16 23 C -0.07 -0.85 5.86 -27.81 -0.16 -1.01 16 24 H 0.04 0.73 7.74 -51.93 -0.40 0.32 16 25 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.41 8.53 7.87 -40.82 -0.32 8.21 16 31 H 0.13 2.09 6.12 -52.49 -0.32 1.76 16 32 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 33 H 0.11 1.29 8.06 -52.48 -0.42 0.87 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 317.29 15.07 4.78 4.78 Total: -1.00 -30.29 317.29 -8.87 -39.16 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -5.99 Total: 5.69 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: -2.93 Total: -20.58 kcal Atomic # 7 Polarization: -40.88 SS G_CDS: 0.48 Total: -40.40 kcal Atomic # 8 Polarization: -5.38 SS G_CDS: -0.18 Total: -5.57 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.29 -8.87 -39.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829172249.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.278 kcal (2) G-P(sol) polarization free energy of solvation -30.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds