Wall clock time and date at job start Mon Mar 30 2020 06:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.50699 * 109.47053 * 175.00035 * 4 2 1 6 6 H 1.08006 * 120.00127 * 359.97438 * 5 4 2 7 7 C 1.37874 * 119.99929 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00323 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00031 * 179.97438 * 7 5 4 10 10 H 1.48491 * 109.47133 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47166 * 120.00332 * 9 7 5 12 12 H 1.48501 * 109.46968 * 239.99912 * 9 7 5 13 13 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 14 14 C 1.39959 * 120.00108 * 275.00162 * 13 2 1 15 15 C 1.38572 * 119.95483 * 359.72080 * 14 13 2 16 16 C 1.38228 * 119.87547 * 179.77063 * 15 14 13 17 17 C 1.38104 * 120.03297 * 0.61276 * 16 15 14 18 18 C 1.38642 * 120.45604 * 359.72867 * 17 16 15 19 19 C 1.38158 * 119.87650 * 359.82156 * 18 17 16 20 20 O 1.35947 * 121.83290 * 180.60610 * 19 18 17 21 21 C 1.42820 * 117.86974 * 342.64154 * 20 19 18 22 22 C 1.53406 * 108.38320 * 49.10996 * 21 20 19 23 23 C 1.50779 * 118.72266 * 179.61094 * 18 17 16 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 1.08995 * 109.46750 * 294.99553 * 4 2 1 28 28 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 29 29 H 0.97000 * 120.00334 * 179.97438 * 8 7 5 30 30 H 0.97001 * 119.99547 * 95.00125 * 13 2 1 31 31 H 1.07998 * 120.06450 * 0.02944 * 15 14 13 32 32 H 1.07999 * 119.98456 * 180.35483 * 16 15 14 33 33 H 1.08005 * 119.77608 * 179.71394 * 17 16 15 34 34 H 1.09000 * 109.68229 * 289.38526 * 21 20 19 35 35 H 1.09003 * 109.71545 * 168.84588 * 21 20 19 36 36 H 1.08993 * 109.69940 * 175.68799 * 22 21 20 37 37 H 1.08996 * 109.73568 * 55.10183 * 22 21 20 38 38 H 1.08999 * 109.43674 * 282.15800 * 23 18 17 39 39 H 1.09006 * 109.43478 * 42.07530 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5419 -0.6148 -1.3128 6 1 4.0789 -0.0854 -0.5396 7 6 4.2304 -1.1933 -2.3579 8 7 3.5765 -1.8376 -3.2997 9 14 6.0920 -1.0609 -2.4369 10 1 6.5835 -0.2897 -1.2671 11 1 6.6863 -2.4217 -2.4185 12 1 6.4861 -0.3656 -3.6886 13 7 2.0184 -0.6906 1.1961 14 6 2.1521 0.0075 2.4018 15 6 1.8277 1.3534 2.4616 16 6 1.9558 2.0402 3.6543 17 6 2.4184 1.3888 4.7808 18 6 2.7519 0.0441 4.7278 19 6 2.6179 -0.6520 3.5419 20 8 2.9217 -1.9737 3.4480 21 6 3.7301 -2.5476 4.4760 22 6 3.1426 -2.1453 5.8348 23 6 3.2613 -0.6260 5.9787 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.7517 -1.7714 -1.2057 28 1 1.6054 -0.2616 -2.1371 29 1 4.0608 -2.2443 -4.0351 30 1 2.2491 -1.6318 1.1525 31 1 1.4714 1.8638 1.5790 32 1 1.6980 3.0878 3.7043 33 1 2.5213 1.9305 5.7094 34 1 4.7506 -2.1739 4.3921 35 1 3.7280 -3.6336 4.3823 36 1 3.6982 -2.6346 6.6347 37 1 2.0938 -2.4381 5.8835 38 1 4.3061 -0.3570 6.1345 39 1 2.6705 -0.2960 6.8333 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829172249.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:25 Heat of formation + Delta-G solvation = -48.104175 kcal Electronic energy + Delta-G solvation = -19746.892382 eV Core-core repulsion = 16845.870279 eV Total energy + Delta-G solvation = -2901.022103 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.50201 -38.93648 -37.47333 -35.34194 -34.41873 -32.36360 -31.38077 -29.29441 -28.80560 -26.50230 -25.17633 -24.60964 -22.79213 -21.76999 -20.31184 -18.73811 -18.42635 -18.07086 -17.10930 -16.59126 -16.31772 -15.82434 -15.40581 -15.00993 -14.84402 -14.71372 -14.36133 -14.22359 -13.84407 -13.62950 -13.35773 -13.18456 -13.10845 -12.71272 -12.63950 -12.42063 -12.33146 -12.13688 -11.74484 -11.55168 -11.33563 -11.26574 -11.22161 -10.64678 -10.57202 -9.15274 -8.21716 -7.91474 -6.29532 0.56659 0.81535 1.34599 1.35818 1.48457 2.38219 2.47955 2.78319 3.03213 3.13438 3.82206 3.86218 3.99286 4.15369 4.25243 4.35078 4.39683 4.50957 4.56456 4.59413 4.62061 4.72898 4.78593 4.91721 4.97881 5.02664 5.09544 5.18784 5.21727 5.26177 5.36420 5.43646 5.53918 5.64218 5.78573 5.80937 6.06487 6.22326 6.45467 6.82525 6.84269 7.05092 7.38681 8.90137 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.019024 B = 0.006031 C = 0.005303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.502130 B = 4641.319602 C = 5278.315095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.161 3.839 3 H 0.062 0.938 4 C 0.023 3.977 5 C -0.521 4.521 6 H 0.049 0.951 7 C 0.004 3.996 8 N -0.930 5.930 9 Si 0.956 3.044 10 H -0.272 1.272 11 H -0.279 1.279 12 H -0.276 1.276 13 N -0.723 5.723 14 C 0.187 3.813 15 C -0.202 4.202 16 C -0.098 4.098 17 C -0.163 4.163 18 C -0.123 4.123 19 C 0.025 3.975 20 O -0.344 6.344 21 C 0.051 3.949 22 C -0.150 4.150 23 C -0.075 4.075 24 H 0.061 0.939 25 H 0.046 0.954 26 H 0.067 0.933 27 H -0.003 1.003 28 H 0.011 0.989 29 H 0.263 0.737 30 H 0.394 0.606 31 H 0.124 0.876 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.057 0.943 35 H 0.117 0.883 36 H 0.110 0.890 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.936 3.331 19.561 19.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.055 3.945 3 H 0.080 0.920 4 C -0.015 4.015 5 C -0.559 4.559 6 H 0.067 0.933 7 C -0.194 4.194 8 N -0.571 5.571 9 Si 0.782 3.218 10 H -0.196 1.196 11 H -0.205 1.205 12 H -0.201 1.201 13 N -0.350 5.350 14 C 0.082 3.918 15 C -0.226 4.226 16 C -0.117 4.117 17 C -0.183 4.183 18 C -0.125 4.125 19 C -0.023 4.023 20 O -0.260 6.260 21 C -0.023 4.023 22 C -0.187 4.187 23 C -0.112 4.112 24 H 0.080 0.920 25 H 0.066 0.934 26 H 0.086 0.914 27 H 0.015 0.985 28 H 0.030 0.970 29 H 0.072 0.928 30 H 0.228 0.772 31 H 0.142 0.858 32 H 0.162 0.838 33 H 0.162 0.838 34 H 0.075 0.925 35 H 0.135 0.865 36 H 0.129 0.871 37 H 0.087 0.913 38 H 0.104 0.896 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.036 3.211 19.078 19.453 hybrid contribution 1.076 -0.548 -0.703 1.397 sum -0.961 2.663 18.375 18.592 Atomic orbital electron populations 1.22170 0.95467 1.01620 1.01895 1.20887 0.92927 0.95886 0.84759 0.92014 1.19242 0.95144 0.94687 0.92396 1.21467 0.93261 1.33656 1.07563 0.93280 1.25817 1.03006 0.95085 0.95448 1.70075 1.37220 1.37036 1.12757 0.85530 0.80393 0.77879 0.78024 1.19611 1.20469 1.20134 1.44727 1.71645 1.12220 1.06370 1.17876 0.97080 0.91985 0.84835 1.20664 1.09882 0.91955 1.00068 1.21034 0.98604 1.00348 0.91673 1.20890 1.04521 0.93272 0.99608 1.19936 1.03154 0.95497 0.93874 1.18349 1.06512 0.84240 0.93205 1.85905 1.68613 1.20943 1.50504 1.23149 0.93142 0.99291 0.86736 1.22188 1.02511 0.96443 0.97601 1.20556 1.02150 0.94295 0.94193 0.92010 0.93439 0.91382 0.98489 0.97048 0.92830 0.77204 0.85811 0.83828 0.83752 0.92483 0.86503 0.87124 0.91294 0.89578 0.88173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.39 9.44 71.98 0.68 -4.71 16 2 C 0.16 6.79 2.21 44.99 0.10 6.89 16 3 H 0.06 2.64 6.47 -2.39 -0.02 2.62 16 4 C 0.02 1.19 4.52 29.85 0.13 1.32 16 5 C -0.52 -29.88 8.84 25.60 0.23 -29.65 16 6 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 7 C 0.00 0.24 5.46 84.65 0.46 0.70 16 8 N -0.93 -56.56 13.29 21.45 0.28 -56.27 16 9 Si 0.96 45.61 29.54 68.60 2.03 47.64 16 10 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 13 N -0.72 -30.24 4.95 -318.32 -1.58 -31.81 16 14 C 0.19 7.11 6.66 38.28 0.25 7.37 16 15 C -0.20 -6.78 8.86 22.35 0.20 -6.58 16 16 C -0.10 -2.66 10.04 22.24 0.22 -2.44 16 17 C -0.16 -4.10 9.66 22.33 0.22 -3.88 16 18 C -0.12 -3.42 5.75 -19.76 -0.11 -3.54 16 19 C 0.02 0.86 6.49 22.61 0.15 1.01 16 20 O -0.34 -11.87 9.42 -92.96 -0.88 -12.74 16 21 C 0.05 1.24 7.03 72.12 0.51 1.75 16 22 C -0.15 -2.73 6.19 30.76 0.19 -2.54 16 23 C -0.08 -1.45 5.86 29.90 0.18 -1.27 16 24 H 0.06 1.96 7.74 -2.39 -0.02 1.94 16 25 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 27 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 28 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 30 H 0.39 17.64 7.87 -92.71 -0.73 16.91 16 31 H 0.12 4.08 6.12 -2.91 -0.02 4.06 16 32 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 33 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 34 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 Total: -1.00 -66.94 317.29 3.57 -63.37 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: 0.31 Total: 25.40 kcal Atomic # 6 Polarization: -38.97 SS G_CDS: 3.40 Total: -35.57 kcal Atomic # 7 Polarization: -86.79 SS G_CDS: -1.29 Total: -88.09 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: -0.88 Total: -12.74 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -66.94 3.57 -63.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829172249.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.266 kcal (2) G-P(sol) polarization free energy of solvation -66.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds