Wall clock time and date at job start Mon Mar 30 2020 06:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46892 * 2 1 4 4 C 1.52997 * 109.47231 * 119.99758 * 2 1 3 5 5 C 1.50699 * 109.47163 * 184.99869 * 4 2 1 6 6 H 1.08002 * 120.00100 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99991 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00100 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99966 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.46724 * 90.00997 * 9 7 5 11 11 H 1.48500 * 109.47243 * 210.00494 * 9 7 5 12 12 H 1.48490 * 109.47352 * 330.00847 * 9 7 5 13 13 N 1.46495 * 109.47385 * 240.00359 * 2 1 3 14 14 C 1.39959 * 120.00370 * 84.99404 * 13 2 1 15 15 C 1.38572 * 119.95574 * 0.02562 * 14 13 2 16 16 C 1.38232 * 119.87326 * 179.67849 * 15 14 13 17 17 C 1.38107 * 120.03884 * 0.39893 * 16 15 14 18 18 C 1.38643 * 120.45284 * 0.02562 * 17 16 15 19 19 C 1.38158 * 119.87372 * 359.76965 * 18 17 16 20 20 O 1.35958 * 121.83789 * 180.55631 * 19 18 17 21 21 C 1.42834 * 117.83617 * 342.51794 * 20 19 18 22 22 C 1.53403 * 108.36267 * 49.22381 * 21 20 19 23 23 C 1.50776 * 118.72478 * 179.50718 * 18 17 16 24 24 H 1.09001 * 109.47520 * 299.99849 * 1 2 3 25 25 H 1.09000 * 109.47195 * 59.99996 * 1 2 3 26 26 H 1.08999 * 109.47087 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47081 * 305.00472 * 4 2 1 28 28 H 1.09000 * 109.46821 * 65.00502 * 4 2 1 29 29 H 0.97005 * 120.00312 * 179.97438 * 8 7 5 30 30 H 0.97006 * 120.00073 * 264.99965 * 13 2 1 31 31 H 1.08002 * 120.06543 * 359.96133 * 15 14 13 32 32 H 1.07993 * 119.97698 * 180.37177 * 16 15 14 33 33 H 1.08000 * 119.77330 * 179.97438 * 17 16 15 34 34 H 1.08999 * 109.68632 * 168.94109 * 21 20 19 35 35 H 1.09004 * 109.68481 * 289.46544 * 21 20 19 36 36 H 1.09009 * 109.69378 * 55.07712 * 22 21 20 37 37 H 1.08994 * 109.69811 * 175.62692 * 22 21 20 38 38 H 1.09004 * 109.43109 * 282.31924 * 23 18 17 39 39 H 1.09002 * 109.43485 * 42.17834 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.6149 1.3127 6 1 4.0790 -0.0854 0.5395 7 6 4.2304 -1.1925 2.3583 8 7 3.5764 -1.8368 3.3000 9 14 6.0920 -1.0601 2.4373 10 1 6.4696 0.1626 3.1907 11 1 6.6445 -2.2551 3.1242 12 1 6.6416 -0.9825 1.0601 13 7 2.0184 -0.6905 -1.1962 14 6 2.1520 0.0077 -2.4018 15 6 1.8225 1.3523 -2.4629 16 6 1.9615 2.0418 -3.6529 17 6 2.4200 1.3894 -4.7805 18 6 2.7434 0.0421 -4.7301 19 6 2.6114 -0.6533 -3.5437 20 8 2.9276 -1.9721 -3.4464 21 6 3.0362 -2.7229 -4.6565 22 6 3.9325 -1.9455 -5.6289 23 6 3.2296 -0.6338 -5.9871 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6053 -0.2617 2.1369 28 1 1.7517 -1.7715 1.2055 29 1 4.0608 -2.2435 4.0355 30 1 2.2491 -1.6317 -1.1527 31 1 1.4623 1.8617 -1.5813 32 1 1.7109 3.0912 -3.7009 33 1 2.5265 1.9322 -5.7081 34 1 3.4798 -3.6961 -4.4463 35 1 2.0474 -2.8573 -5.0952 36 1 4.8902 -1.7313 -5.1543 37 1 4.0936 -2.5351 -6.5314 38 1 2.3805 -0.8434 -6.6377 39 1 3.9289 0.0227 -6.5048 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829172250.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:28 Heat of formation + Delta-G solvation = -30.695500 kcal Electronic energy + Delta-G solvation = -19742.696745 eV Core-core repulsion = 16842.429539 eV Total energy + Delta-G solvation = -2900.267206 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.34747 -37.62446 -36.08567 -33.98980 -32.59804 -30.89013 -30.26057 -27.50915 -27.34248 -25.49500 -23.51933 -23.20378 -21.41842 -20.46661 -19.04520 -17.42692 -16.88231 -16.25827 -15.92062 -15.03693 -14.74127 -14.43376 -14.21946 -13.90039 -13.79200 -13.23697 -12.96547 -12.82419 -12.62539 -11.99806 -11.80588 -11.63132 -11.43342 -11.39226 -11.23752 -10.80726 -10.72663 -10.59148 -10.55368 -10.31460 -10.12892 -9.53261 -9.31166 -9.00489 -8.37993 -7.97883 -6.53801 -6.00713 -4.02074 1.76444 2.03906 3.32904 3.39178 3.44738 3.60490 4.19008 4.22792 4.47325 4.73379 4.81043 4.88696 5.22731 5.31530 5.36229 5.46926 5.50407 5.59310 5.63306 5.77979 5.82700 5.92156 6.03417 6.05780 6.07116 6.18050 6.27848 6.46068 6.54743 6.69575 6.78420 6.86670 7.00071 7.20155 7.48609 7.59316 7.76417 7.97075 8.20844 8.39537 8.58843 9.04070 9.62263 11.10368 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.018788 B = 0.006037 C = 0.005319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.942537 B = 4636.680578 C = 5262.985413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.147 3.853 3 H 0.067 0.933 4 C 0.016 3.984 5 C -0.513 4.513 6 H 0.057 0.943 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.710 5.710 14 C 0.222 3.778 15 C -0.190 4.190 16 C -0.095 4.095 17 C -0.170 4.170 18 C -0.118 4.118 19 C 0.044 3.956 20 O -0.315 6.315 21 C 0.065 3.935 22 C -0.159 4.159 23 C -0.074 4.074 24 H 0.058 0.942 25 H 0.044 0.956 26 H 0.051 0.949 27 H 0.030 0.970 28 H 0.021 0.979 29 H 0.260 0.740 30 H 0.405 0.595 31 H 0.127 0.873 32 H 0.115 0.885 33 H 0.111 0.889 34 H 0.101 0.899 35 H 0.056 0.944 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.406 2.173 -17.062 17.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.043 3.957 3 H 0.085 0.915 4 C -0.021 4.021 5 C -0.551 4.551 6 H 0.075 0.925 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.335 5.335 14 C 0.114 3.886 15 C -0.214 4.214 16 C -0.114 4.114 17 C -0.190 4.190 18 C -0.119 4.119 19 C -0.004 4.004 20 O -0.230 6.230 21 C -0.010 4.010 22 C -0.197 4.197 23 C -0.111 4.111 24 H 0.077 0.923 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.048 0.952 28 H 0.039 0.961 29 H 0.070 0.930 30 H 0.241 0.759 31 H 0.145 0.855 32 H 0.133 0.867 33 H 0.129 0.871 34 H 0.119 0.881 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.416 2.043 -16.516 16.989 hybrid contribution 1.188 -0.271 -0.067 1.220 sum -2.228 1.772 -16.583 16.825 Atomic orbital electron populations 1.22295 0.97818 1.01500 1.00673 1.21198 0.91153 0.97104 0.86286 0.91535 1.19384 0.96318 0.95776 0.90652 1.21183 0.91803 1.34178 1.07924 0.92479 1.24992 0.98303 0.95338 0.95734 1.69957 1.35487 1.36083 1.12089 0.86614 0.85956 0.77444 0.78155 1.20720 1.21311 1.19888 1.44903 1.70029 1.12718 1.05864 1.17536 0.94041 0.91498 0.85511 1.20488 1.09575 0.92301 0.99038 1.20668 0.99401 0.98955 0.92410 1.20420 1.06698 0.93436 0.98486 1.19424 1.03757 0.94779 0.93964 1.18077 1.05349 0.83671 0.93331 1.85978 1.86246 1.18711 1.32047 1.22812 0.99152 0.94373 0.84678 1.22219 1.00068 0.97158 1.00264 1.20413 0.99872 0.95908 0.94890 0.92328 0.93675 0.93002 0.95161 0.96105 0.93042 0.75930 0.85531 0.86712 0.87097 0.88099 0.92527 0.90508 0.90393 0.90971 0.90476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 9.43 37.16 0.35 -2.49 16 2 C 0.15 3.01 2.21 -67.93 -0.15 2.86 16 3 H 0.07 1.38 6.48 -51.93 -0.34 1.04 16 4 C 0.02 0.40 4.52 -27.89 -0.13 0.27 16 5 C -0.51 -14.30 8.84 -34.44 -0.30 -14.61 16 6 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 7 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 8 N -0.90 -26.71 13.29 55.43 0.74 -25.97 16 9 Si 0.89 22.06 29.54 -169.99 -5.02 17.03 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 13 N -0.71 -14.26 4.95 -51.97 -0.26 -14.52 16 14 C 0.22 4.15 6.66 -83.47 -0.56 3.59 16 15 C -0.19 -3.23 8.84 -39.46 -0.35 -3.58 16 16 C -0.10 -1.41 10.04 -39.63 -0.40 -1.80 16 17 C -0.17 -2.41 9.66 -39.48 -0.38 -2.79 16 18 C -0.12 -1.76 5.75 -104.46 -0.60 -2.36 16 19 C 0.04 0.77 6.49 -39.06 -0.25 0.51 16 20 O -0.32 -5.38 9.42 -19.61 -0.18 -5.56 16 21 C 0.07 0.80 7.03 37.37 0.26 1.07 16 22 C -0.16 -1.72 6.19 -26.49 -0.16 -1.88 16 23 C -0.07 -0.84 5.86 -27.81 -0.16 -1.00 16 24 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.04 0.72 7.70 -51.93 -0.40 0.32 16 26 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.41 8.55 7.87 -40.82 -0.32 8.22 16 31 H 0.13 2.08 6.10 -52.49 -0.32 1.76 16 32 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 33 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 34 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.92 8.14 -51.92 -0.42 0.50 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 317.21 15.07 4.78 4.78 Total: -1.00 -30.43 317.21 -8.87 -39.29 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -5.99 Total: 5.62 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: -2.93 Total: -20.68 kcal Atomic # 7 Polarization: -40.97 SS G_CDS: 0.48 Total: -40.49 kcal Atomic # 8 Polarization: -5.38 SS G_CDS: -0.18 Total: -5.56 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.43 -8.87 -39.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829172250.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.599 kcal (2) G-P(sol) polarization free energy of solvation -30.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds