Wall clock time and date at job start Mon Mar 30 2020 06:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46892 * 2 1 4 4 C 1.52997 * 109.47231 * 119.99758 * 2 1 3 5 5 C 1.50699 * 109.47163 * 184.99869 * 4 2 1 6 6 H 1.08002 * 120.00100 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99991 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00100 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99966 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.46724 * 90.00997 * 9 7 5 11 11 H 1.48500 * 109.47243 * 210.00494 * 9 7 5 12 12 H 1.48490 * 109.47352 * 330.00847 * 9 7 5 13 13 N 1.46495 * 109.47385 * 240.00359 * 2 1 3 14 14 C 1.39959 * 120.00370 * 84.99404 * 13 2 1 15 15 C 1.38572 * 119.95574 * 0.02562 * 14 13 2 16 16 C 1.38232 * 119.87326 * 179.67849 * 15 14 13 17 17 C 1.38107 * 120.03884 * 0.39893 * 16 15 14 18 18 C 1.38643 * 120.45284 * 0.02562 * 17 16 15 19 19 C 1.38158 * 119.87372 * 359.76965 * 18 17 16 20 20 O 1.35958 * 121.83789 * 180.55631 * 19 18 17 21 21 C 1.42834 * 117.83617 * 342.51794 * 20 19 18 22 22 C 1.53403 * 108.36267 * 49.22381 * 21 20 19 23 23 C 1.50776 * 118.72478 * 179.50718 * 18 17 16 24 24 H 1.09001 * 109.47520 * 299.99849 * 1 2 3 25 25 H 1.09000 * 109.47195 * 59.99996 * 1 2 3 26 26 H 1.08999 * 109.47087 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47081 * 305.00472 * 4 2 1 28 28 H 1.09000 * 109.46821 * 65.00502 * 4 2 1 29 29 H 0.97005 * 120.00312 * 179.97438 * 8 7 5 30 30 H 0.97006 * 120.00073 * 264.99965 * 13 2 1 31 31 H 1.08002 * 120.06543 * 359.96133 * 15 14 13 32 32 H 1.07993 * 119.97698 * 180.37177 * 16 15 14 33 33 H 1.08000 * 119.77330 * 179.97438 * 17 16 15 34 34 H 1.08999 * 109.68632 * 168.94109 * 21 20 19 35 35 H 1.09004 * 109.68481 * 289.46544 * 21 20 19 36 36 H 1.09009 * 109.69378 * 55.07712 * 22 21 20 37 37 H 1.08994 * 109.69811 * 175.62692 * 22 21 20 38 38 H 1.09004 * 109.43109 * 282.31924 * 23 18 17 39 39 H 1.09002 * 109.43485 * 42.17834 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.6149 1.3127 6 1 4.0790 -0.0854 0.5395 7 6 4.2304 -1.1925 2.3583 8 7 3.5764 -1.8368 3.3000 9 14 6.0920 -1.0601 2.4373 10 1 6.4696 0.1626 3.1907 11 1 6.6445 -2.2551 3.1242 12 1 6.6416 -0.9825 1.0601 13 7 2.0184 -0.6905 -1.1962 14 6 2.1520 0.0077 -2.4018 15 6 1.8225 1.3523 -2.4629 16 6 1.9615 2.0418 -3.6529 17 6 2.4200 1.3894 -4.7805 18 6 2.7434 0.0421 -4.7301 19 6 2.6114 -0.6533 -3.5437 20 8 2.9276 -1.9721 -3.4464 21 6 3.0362 -2.7229 -4.6565 22 6 3.9325 -1.9455 -5.6289 23 6 3.2296 -0.6338 -5.9871 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6053 -0.2617 2.1369 28 1 1.7517 -1.7715 1.2055 29 1 4.0608 -2.2435 4.0355 30 1 2.2491 -1.6317 -1.1527 31 1 1.4623 1.8617 -1.5813 32 1 1.7109 3.0912 -3.7009 33 1 2.5265 1.9322 -5.7081 34 1 3.4798 -3.6961 -4.4463 35 1 2.0474 -2.8573 -5.0952 36 1 4.8902 -1.7313 -5.1543 37 1 4.0936 -2.5351 -6.5314 38 1 2.3805 -0.8434 -6.6377 39 1 3.9289 0.0227 -6.5048 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829172250.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:27 Heat of formation + Delta-G solvation = -48.071632 kcal Electronic energy + Delta-G solvation = -19743.450231 eV Core-core repulsion = 16842.429539 eV Total energy + Delta-G solvation = -2901.020692 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.50116 -38.93524 -37.47239 -35.34109 -34.41786 -32.36274 -31.37803 -29.29194 -28.80463 -26.49928 -25.17288 -24.60888 -22.79089 -21.77575 -20.30251 -18.73487 -18.42409 -18.06774 -17.15303 -16.58609 -16.20014 -15.83015 -15.49306 -15.09445 -14.86827 -14.50793 -14.43066 -14.16713 -13.93392 -13.60482 -13.33679 -13.26262 -12.95428 -12.70014 -12.65391 -12.52439 -12.40178 -12.01820 -11.75979 -11.54666 -11.34508 -11.30168 -11.18861 -10.64275 -10.57336 -9.15098 -8.21466 -7.91150 -6.29196 0.56843 0.81752 1.35580 1.36220 1.47633 2.38536 2.48138 2.80203 3.01245 3.13656 3.82626 3.86314 3.98682 4.15490 4.25610 4.35051 4.40094 4.50798 4.55874 4.59710 4.61964 4.72209 4.79520 4.91614 4.97805 5.02673 5.09609 5.18954 5.21638 5.26117 5.36574 5.43673 5.54089 5.64268 5.78647 5.81032 6.06758 6.22567 6.45933 6.82812 6.84382 7.05231 7.38920 8.90132 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.018788 B = 0.006037 C = 0.005319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.942537 B = 4636.680578 C = 5262.985413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.160 3.840 3 H 0.062 0.938 4 C 0.023 3.977 5 C -0.523 4.523 6 H 0.048 0.952 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.955 3.045 10 H -0.271 1.271 11 H -0.280 1.280 12 H -0.274 1.274 13 N -0.723 5.723 14 C 0.187 3.813 15 C -0.202 4.202 16 C -0.098 4.098 17 C -0.163 4.163 18 C -0.123 4.123 19 C 0.025 3.975 20 O -0.346 6.346 21 C 0.053 3.947 22 C -0.154 4.154 23 C -0.074 4.074 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.047 0.953 27 H 0.011 0.989 28 H -0.003 1.003 29 H 0.263 0.737 30 H 0.394 0.606 31 H 0.124 0.876 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.114 0.886 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.112 0.888 38 H 0.092 0.908 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.788 3.132 -19.760 20.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.055 3.945 3 H 0.080 0.920 4 C -0.014 4.014 5 C -0.561 4.561 6 H 0.067 0.933 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.781 3.219 10 H -0.197 1.197 11 H -0.206 1.206 12 H -0.199 1.199 13 N -0.350 5.350 14 C 0.082 3.918 15 C -0.226 4.226 16 C -0.117 4.117 17 C -0.183 4.183 18 C -0.125 4.125 19 C -0.023 4.023 20 O -0.261 6.261 21 C -0.021 4.021 22 C -0.191 4.191 23 C -0.110 4.110 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.066 0.934 27 H 0.029 0.971 28 H 0.015 0.985 29 H 0.072 0.928 30 H 0.228 0.772 31 H 0.142 0.858 32 H 0.162 0.838 33 H 0.162 0.838 34 H 0.132 0.868 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.130 0.870 38 H 0.111 0.889 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.801 3.028 -19.252 19.689 hybrid contribution 0.993 -0.564 0.662 1.320 sum -1.808 2.463 -18.590 18.840 Atomic orbital electron populations 1.22168 0.95416 1.01632 1.01910 1.20887 0.92951 0.95878 0.84756 0.92037 1.19234 0.95085 0.94690 0.92410 1.21441 0.93311 1.33771 1.07551 0.93330 1.25808 1.02975 0.95068 0.95454 1.70066 1.37280 1.36969 1.12719 0.85591 0.80385 0.77863 0.78057 1.19679 1.20584 1.19907 1.44723 1.71729 1.12156 1.06364 1.17885 0.96077 0.92403 0.85443 1.20663 1.09875 0.91913 1.00106 1.21034 0.98674 1.00304 0.91667 1.20888 1.04637 0.93245 0.99515 1.19936 1.02700 0.95354 0.94501 1.18351 1.05782 0.84213 0.93913 1.85934 1.86407 1.18948 1.34820 1.23152 1.00386 0.94712 0.83895 1.22207 0.98647 0.97301 1.00984 1.20541 1.01007 0.96105 0.93394 0.91388 0.91983 0.93410 0.97052 0.98480 0.92826 0.77211 0.85805 0.83836 0.83759 0.86783 0.91484 0.92132 0.86973 0.88943 0.88581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.35 9.43 71.98 0.68 -4.67 16 2 C 0.16 6.79 2.21 44.99 0.10 6.89 16 3 H 0.06 2.63 6.48 -2.38 -0.02 2.61 16 4 C 0.02 1.22 4.52 29.85 0.13 1.35 16 5 C -0.52 -30.10 8.84 25.60 0.23 -29.88 16 6 H 0.05 2.83 7.74 -2.91 -0.02 2.80 16 7 C 0.00 0.28 5.46 84.65 0.46 0.74 16 8 N -0.93 -56.68 13.29 21.45 0.28 -56.39 16 9 Si 0.96 45.90 29.54 68.60 2.03 47.93 16 10 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.27 -13.06 7.11 99.48 0.71 -12.36 16 13 N -0.72 -30.26 4.95 -318.32 -1.58 -31.84 16 14 C 0.19 7.10 6.66 38.28 0.25 7.35 16 15 C -0.20 -6.77 8.84 22.35 0.20 -6.57 16 16 C -0.10 -2.66 10.04 22.24 0.22 -2.44 16 17 C -0.16 -4.09 9.66 22.34 0.22 -3.88 16 18 C -0.12 -3.43 5.75 -19.76 -0.11 -3.54 16 19 C 0.03 0.88 6.49 22.61 0.15 1.03 16 20 O -0.35 -11.93 9.42 -93.08 -0.88 -12.81 16 21 C 0.05 1.24 7.03 72.12 0.51 1.75 16 22 C -0.15 -2.92 6.19 30.75 0.19 -2.73 16 23 C -0.07 -1.42 5.86 29.89 0.18 -1.24 16 24 H 0.07 2.21 8.14 -2.39 -0.02 2.20 16 25 H 0.06 1.95 7.70 -2.39 -0.02 1.93 16 26 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 29 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 30 H 0.39 17.67 7.87 -92.70 -0.73 16.94 16 31 H 0.12 4.08 6.10 -2.91 -0.02 4.06 16 32 H 0.14 2.99 8.06 -2.91 -0.02 2.96 16 33 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 34 H 0.11 2.25 8.14 -2.39 -0.02 2.24 16 35 H 0.07 1.39 8.14 -2.38 -0.02 1.38 16 36 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 37 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -67.32 317.21 3.56 -63.76 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: 0.31 Total: 25.20 kcal Atomic # 6 Polarization: -39.25 SS G_CDS: 3.40 Total: -35.85 kcal Atomic # 7 Polarization: -86.94 SS G_CDS: -1.29 Total: -88.23 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: -0.88 Total: -12.81 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -67.32 3.56 -63.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829172250.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.687 kcal (2) G-P(sol) polarization free energy of solvation -67.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds