Wall clock time and date at job start Mon Mar 30 2020 06:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47175 * 2 1 4 4 C 1.53006 * 109.46646 * 240.00025 * 2 1 3 5 5 C 1.50699 * 109.46866 * 175.00111 * 4 2 1 6 6 H 1.08003 * 119.99962 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00270 * 180.02562 * 5 4 2 8 8 N 1.31522 * 119.99834 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00496 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.47141 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47494 * 119.99680 * 9 7 5 12 12 H 1.48505 * 109.47047 * 239.99860 * 9 7 5 13 13 N 1.46495 * 109.47194 * 120.00216 * 2 1 3 14 14 C 1.39933 * 120.00267 * 274.99636 * 13 2 1 15 15 C 1.38891 * 120.08792 * 359.72572 * 14 13 2 16 16 C 1.37921 * 119.88242 * 179.84215 * 15 14 13 17 17 C 1.39139 * 120.31444 * 0.54383 * 16 15 14 18 18 C 1.38355 * 119.81985 * 359.58497 * 17 16 15 19 19 C 1.38491 * 119.89614 * 0.17420 * 18 17 16 20 20 C 1.50783 * 121.41347 * 180.32936 * 18 17 16 21 21 C 1.53069 * 109.69218 * 342.17230 * 20 18 17 22 22 C 1.53407 * 108.29316 * 48.22857 * 21 20 18 23 23 O 1.35983 * 118.40900 * 179.43947 * 17 16 15 24 24 H 1.08990 * 109.47621 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46731 * 299.99878 * 1 2 3 26 26 H 1.09004 * 109.47394 * 59.99257 * 1 2 3 27 27 H 1.08993 * 109.46955 * 295.00330 * 4 2 1 28 28 H 1.09000 * 109.47050 * 55.00158 * 4 2 1 29 29 H 0.96992 * 120.00032 * 180.02562 * 8 7 5 30 30 H 0.97007 * 119.99853 * 94.99634 * 13 2 1 31 31 H 1.08001 * 120.05608 * 0.09401 * 15 14 13 32 32 H 1.07992 * 119.84255 * 180.27794 * 16 15 14 33 33 H 1.08001 * 119.86522 * 179.97438 * 19 18 17 34 34 H 1.09000 * 109.43259 * 102.24198 * 20 18 17 35 35 H 1.08993 * 109.43129 * 222.10433 * 20 18 17 36 36 H 1.09006 * 109.69729 * 167.93084 * 21 20 18 37 37 H 1.09002 * 109.69586 * 288.53004 * 21 20 18 38 38 H 1.09002 * 109.68422 * 54.98287 * 22 21 20 39 39 H 1.09005 * 109.67935 * 175.49721 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5418 -0.6150 -1.3128 6 1 4.0788 -0.0856 -0.5397 7 6 4.2302 -1.1927 -2.3584 8 7 3.5762 -1.8370 -3.3002 9 14 6.0919 -1.0616 -2.4368 10 1 6.5837 -0.2921 -1.2657 11 1 6.6852 -2.4228 -2.4199 12 1 6.4868 -0.3650 -3.6875 13 7 2.0183 -0.6906 1.1961 14 6 2.1521 0.0074 2.4015 15 6 1.8277 1.3564 2.4647 16 6 1.9581 2.0395 3.6557 17 6 2.4238 1.3863 4.7926 18 6 2.7495 0.0431 4.7295 19 6 2.6142 -0.6446 3.5350 20 6 3.2505 -0.7019 5.9409 21 6 3.7367 0.2956 6.9952 22 6 2.6608 1.3753 7.1690 23 8 2.5482 2.0999 5.9434 24 1 -0.3634 -1.0275 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5140 -0.8899 27 1 1.7514 -1.7715 -1.2057 28 1 1.6052 -0.2617 -2.1370 29 1 4.0605 -2.2437 -4.0356 30 1 2.2490 -1.6319 1.1525 31 1 1.4703 1.8686 1.5836 32 1 1.7015 3.0873 3.7052 33 1 2.8690 -1.6930 3.4862 34 1 2.4422 -1.3037 6.3564 35 1 4.0746 -1.3534 5.6508 36 1 3.8965 -0.2197 7.9424 37 1 4.6682 0.7550 6.6644 38 1 1.7059 0.9070 7.4078 39 1 2.9480 2.0538 7.9723 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829178527.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:22 Heat of formation + Delta-G solvation = -32.314595 kcal Electronic energy + Delta-G solvation = -19299.385869 eV Core-core repulsion = 16399.048453 eV Total energy + Delta-G solvation = -2900.337416 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.32050 -38.06335 -35.64409 -34.10405 -32.78168 -31.08524 -30.19897 -27.65607 -27.42761 -25.33890 -23.50258 -22.90012 -22.19438 -20.27432 -19.18761 -17.41652 -16.63450 -16.40327 -16.20748 -15.18136 -14.77983 -14.45116 -14.27873 -13.88324 -13.39726 -13.32430 -12.94949 -12.80999 -12.64800 -12.57624 -11.84816 -11.70701 -11.51723 -11.45593 -11.30873 -10.96299 -10.81598 -10.66681 -10.53159 -10.27788 -10.16883 -9.41044 -9.24625 -8.83679 -8.44505 -8.42201 -6.53621 -6.05486 -4.07364 1.68242 2.04657 3.28366 3.36645 3.42141 3.57557 4.14223 4.21871 4.43065 4.68949 4.72279 4.83338 5.11167 5.22744 5.31435 5.39045 5.48433 5.56386 5.67960 5.72474 5.79903 5.87967 5.99184 6.01756 6.04672 6.15396 6.32461 6.36566 6.53839 6.64799 6.77021 6.81482 6.83642 7.05634 7.49115 7.55637 7.78204 7.92452 8.12848 8.34550 8.50126 8.99582 9.57539 11.05548 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.024004 B = 0.004736 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.171643 B = 5911.299420 C = 6545.927178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.148 3.852 3 H 0.066 0.934 4 C 0.016 3.984 5 C -0.514 4.514 6 H 0.058 0.942 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.719 5.719 14 C 0.214 3.786 15 C -0.172 4.172 16 C -0.096 4.096 17 C 0.048 3.952 18 C -0.108 4.108 19 C -0.179 4.179 20 C -0.077 4.077 21 C -0.158 4.158 22 C 0.064 3.936 23 O -0.323 6.323 24 H 0.051 0.949 25 H 0.044 0.956 26 H 0.057 0.943 27 H 0.020 0.980 28 H 0.030 0.970 29 H 0.260 0.740 30 H 0.399 0.601 31 H 0.128 0.872 32 H 0.122 0.878 33 H 0.118 0.882 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.056 0.944 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.522 3.615 17.888 18.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.043 3.957 3 H 0.084 0.916 4 C -0.022 4.022 5 C -0.553 4.553 6 H 0.076 0.924 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.718 3.282 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.345 5.345 14 C 0.107 3.893 15 C -0.195 4.195 16 C -0.115 4.115 17 C 0.003 3.997 18 C -0.110 4.110 19 C -0.203 4.203 20 C -0.114 4.114 21 C -0.196 4.196 22 C -0.012 4.012 23 O -0.239 6.239 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.076 0.924 27 H 0.039 0.961 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.234 0.766 31 H 0.146 0.854 32 H 0.140 0.860 33 H 0.136 0.864 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.566 3.826 17.545 18.308 hybrid contribution 1.221 -0.662 -0.184 1.401 sum -2.345 3.164 17.362 17.803 Atomic orbital electron populations 1.22299 0.97842 1.01472 1.00704 1.21175 0.91128 0.97110 0.86299 0.91551 1.19390 0.96313 0.95729 0.90745 1.21232 0.91815 1.34202 1.08023 0.92377 1.25004 0.98347 0.95332 0.95698 1.69967 1.35437 1.36050 1.12092 0.86563 0.85914 0.77739 0.77983 1.19735 1.21090 1.21031 1.44949 1.70932 1.12323 1.06281 1.17833 0.93345 0.91462 0.86636 1.20510 1.08010 0.93183 0.97824 1.20266 1.00646 0.99775 0.90794 1.18288 1.04394 0.90563 0.86483 1.19404 1.02784 0.93195 0.95577 1.20246 1.08785 0.99819 0.91443 1.20445 1.00860 0.97201 0.92911 1.22216 0.99710 0.97842 0.99838 1.22789 0.98238 0.94708 0.85423 1.85959 1.89880 1.35065 1.12959 0.93018 0.93669 0.92356 0.96142 0.95179 0.93047 0.76634 0.85431 0.85988 0.86403 0.90832 0.90288 0.90366 0.90588 0.92533 0.88343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 9.45 37.16 0.35 -2.41 16 2 C 0.15 2.90 2.22 -67.93 -0.15 2.75 16 3 H 0.07 1.34 6.48 -51.93 -0.34 1.00 16 4 C 0.02 0.38 4.52 -27.88 -0.13 0.25 16 5 C -0.51 -13.97 8.84 -34.44 -0.30 -14.28 16 6 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -26.24 13.29 55.43 0.74 -25.50 16 9 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 N -0.72 -13.36 4.97 -52.16 -0.26 -13.62 16 14 C 0.21 3.74 6.64 -83.75 -0.56 3.18 16 15 C -0.17 -2.89 8.87 -39.46 -0.35 -3.23 16 16 C -0.10 -1.50 9.93 -39.36 -0.39 -1.89 16 17 C 0.05 0.75 6.47 -39.20 -0.25 0.50 16 18 C -0.11 -1.61 5.75 -104.45 -0.60 -2.21 16 19 C -0.18 -2.87 9.51 -39.32 -0.37 -3.25 16 20 C -0.08 -0.88 5.86 -27.81 -0.16 -1.04 16 21 C -0.16 -1.54 6.19 -26.48 -0.16 -1.70 16 22 C 0.06 0.66 7.03 37.37 0.26 0.92 16 23 O -0.32 -4.63 10.27 -19.69 -0.20 -4.83 16 24 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.04 0.70 7.76 -51.93 -0.40 0.29 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 30 H 0.40 7.42 8.62 -40.82 -0.35 7.07 16 31 H 0.13 2.07 6.16 -52.49 -0.32 1.74 16 32 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 33 H 0.12 1.73 8.06 -52.49 -0.42 1.30 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 318.71 15.07 4.80 4.80 Total: -1.00 -29.80 318.71 -8.89 -38.69 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -6.03 Total: 4.79 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: -2.92 Total: -20.90 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: 0.48 Total: -39.12 kcal Atomic # 8 Polarization: -4.63 SS G_CDS: -0.20 Total: -4.83 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.80 -8.89 -38.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829178527.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.378 kcal (2) G-P(sol) polarization free energy of solvation -29.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds