Wall clock time and date at job start Mon Mar 30 2020 06:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47175 * 2 1 4 4 C 1.53006 * 109.46646 * 240.00025 * 2 1 3 5 5 C 1.50699 * 109.46866 * 175.00111 * 4 2 1 6 6 H 1.08003 * 119.99962 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00270 * 180.02562 * 5 4 2 8 8 N 1.31522 * 119.99834 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00496 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.47141 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47494 * 119.99680 * 9 7 5 12 12 H 1.48505 * 109.47047 * 239.99860 * 9 7 5 13 13 N 1.46495 * 109.47194 * 120.00216 * 2 1 3 14 14 C 1.39933 * 120.00267 * 274.99636 * 13 2 1 15 15 C 1.38891 * 120.08792 * 359.72572 * 14 13 2 16 16 C 1.37921 * 119.88242 * 179.84215 * 15 14 13 17 17 C 1.39139 * 120.31444 * 0.54383 * 16 15 14 18 18 C 1.38355 * 119.81985 * 359.58497 * 17 16 15 19 19 C 1.38491 * 119.89614 * 0.17420 * 18 17 16 20 20 C 1.50783 * 121.41347 * 180.32936 * 18 17 16 21 21 C 1.53069 * 109.69218 * 342.17230 * 20 18 17 22 22 C 1.53407 * 108.29316 * 48.22857 * 21 20 18 23 23 O 1.35983 * 118.40900 * 179.43947 * 17 16 15 24 24 H 1.08990 * 109.47621 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46731 * 299.99878 * 1 2 3 26 26 H 1.09004 * 109.47394 * 59.99257 * 1 2 3 27 27 H 1.08993 * 109.46955 * 295.00330 * 4 2 1 28 28 H 1.09000 * 109.47050 * 55.00158 * 4 2 1 29 29 H 0.96992 * 120.00032 * 180.02562 * 8 7 5 30 30 H 0.97007 * 119.99853 * 94.99634 * 13 2 1 31 31 H 1.08001 * 120.05608 * 0.09401 * 15 14 13 32 32 H 1.07992 * 119.84255 * 180.27794 * 16 15 14 33 33 H 1.08001 * 119.86522 * 179.97438 * 19 18 17 34 34 H 1.09000 * 109.43259 * 102.24198 * 20 18 17 35 35 H 1.08993 * 109.43129 * 222.10433 * 20 18 17 36 36 H 1.09006 * 109.69729 * 167.93084 * 21 20 18 37 37 H 1.09002 * 109.69586 * 288.53004 * 21 20 18 38 38 H 1.09002 * 109.68422 * 54.98287 * 22 21 20 39 39 H 1.09005 * 109.67935 * 175.49721 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5418 -0.6150 -1.3128 6 1 4.0788 -0.0856 -0.5397 7 6 4.2302 -1.1927 -2.3584 8 7 3.5762 -1.8370 -3.3002 9 14 6.0919 -1.0616 -2.4368 10 1 6.5837 -0.2921 -1.2657 11 1 6.6852 -2.4228 -2.4199 12 1 6.4868 -0.3650 -3.6875 13 7 2.0183 -0.6906 1.1961 14 6 2.1521 0.0074 2.4015 15 6 1.8277 1.3564 2.4647 16 6 1.9581 2.0395 3.6557 17 6 2.4238 1.3863 4.7926 18 6 2.7495 0.0431 4.7295 19 6 2.6142 -0.6446 3.5350 20 6 3.2505 -0.7019 5.9409 21 6 3.7367 0.2956 6.9952 22 6 2.6608 1.3753 7.1690 23 8 2.5482 2.0999 5.9434 24 1 -0.3634 -1.0275 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5140 -0.8899 27 1 1.7514 -1.7715 -1.2057 28 1 1.6052 -0.2617 -2.1370 29 1 4.0605 -2.2437 -4.0356 30 1 2.2490 -1.6319 1.1525 31 1 1.4703 1.8686 1.5836 32 1 1.7015 3.0873 3.7052 33 1 2.8690 -1.6930 3.4862 34 1 2.4422 -1.3037 6.3564 35 1 4.0746 -1.3534 5.6508 36 1 3.8965 -0.2197 7.9424 37 1 4.6682 0.7550 6.6644 38 1 1.7059 0.9070 7.4078 39 1 2.9480 2.0538 7.9723 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829178527.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:22 Heat of formation + Delta-G solvation = -48.852575 kcal Electronic energy + Delta-G solvation = -19300.103009 eV Core-core repulsion = 16399.048453 eV Total energy + Delta-G solvation = -2901.054556 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.41616 -39.33682 -37.08525 -35.10456 -34.71239 -32.59343 -31.28719 -29.30818 -28.87807 -26.35510 -25.18056 -24.22147 -23.40100 -21.70845 -20.35337 -18.59898 -18.44442 -17.81820 -17.50603 -16.56094 -16.12452 -16.01784 -15.29507 -14.99729 -14.83155 -14.45880 -14.34790 -14.01283 -14.00532 -13.81323 -13.55457 -13.28848 -13.02584 -12.77467 -12.69454 -12.59214 -12.38869 -12.03045 -11.74833 -11.66181 -11.29227 -11.26337 -11.14146 -10.58966 -10.18675 -9.62452 -8.20666 -7.85633 -6.28500 0.46800 0.80469 1.36123 1.38422 1.50273 2.39516 2.57659 2.75931 2.98253 3.14851 3.79217 3.88818 3.95162 4.08183 4.21359 4.35394 4.40919 4.49712 4.52915 4.62872 4.65641 4.71986 4.80680 4.93004 4.97874 5.02769 5.12776 5.16674 5.23050 5.24318 5.28866 5.45011 5.54000 5.58718 5.63108 5.81211 5.86445 6.24006 6.60793 6.77157 6.86064 7.06061 7.40271 8.90973 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.024004 B = 0.004736 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.171643 B = 5911.299420 C = 6545.927178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.160 3.840 3 H 0.060 0.940 4 C 0.023 3.977 5 C -0.522 4.522 6 H 0.052 0.948 7 C 0.006 3.994 8 N -0.930 5.930 9 Si 0.955 3.045 10 H -0.271 1.271 11 H -0.279 1.279 12 H -0.279 1.279 13 N -0.727 5.727 14 C 0.192 3.808 15 C -0.183 4.183 16 C -0.105 4.105 17 C 0.045 3.955 18 C -0.112 4.112 19 C -0.185 4.185 20 C -0.080 4.080 21 C -0.153 4.153 22 C 0.053 3.947 23 O -0.338 6.338 24 H 0.050 0.950 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.001 0.999 28 H 0.009 0.991 29 H 0.262 0.738 30 H 0.396 0.604 31 H 0.127 0.873 32 H 0.136 0.864 33 H 0.127 0.873 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.111 0.889 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.888 3.905 20.250 20.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.055 3.945 3 H 0.078 0.922 4 C -0.015 4.015 5 C -0.561 4.561 6 H 0.070 0.930 7 C -0.192 4.192 8 N -0.571 5.571 9 Si 0.780 3.220 10 H -0.195 1.195 11 H -0.205 1.205 12 H -0.205 1.205 13 N -0.354 5.354 14 C 0.087 3.913 15 C -0.206 4.206 16 C -0.124 4.124 17 C -0.001 4.001 18 C -0.114 4.114 19 C -0.208 4.208 20 C -0.117 4.117 21 C -0.191 4.191 22 C -0.021 4.021 23 O -0.254 6.254 24 H 0.069 0.931 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.019 0.981 28 H 0.027 0.973 29 H 0.071 0.929 30 H 0.230 0.770 31 H 0.145 0.855 32 H 0.154 0.846 33 H 0.145 0.855 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.129 0.871 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.932 4.132 19.944 20.578 hybrid contribution 1.021 -0.719 -0.791 1.478 sum -1.911 3.413 19.153 19.549 Atomic orbital electron populations 1.22177 0.95516 1.01781 1.01783 1.20861 0.92867 0.95897 0.84903 0.92234 1.19242 0.95022 0.94869 0.92348 1.21507 0.93320 1.33600 1.07633 0.93016 1.25795 1.02829 0.95132 0.95469 1.70073 1.37191 1.37063 1.12772 0.85553 0.80575 0.77856 0.77968 1.19537 1.20453 1.20477 1.44787 1.72124 1.12104 1.06389 1.18023 0.94732 0.91920 0.86580 1.20582 1.08540 0.93095 0.98348 1.20479 1.00655 1.00557 0.90707 1.18478 1.03578 0.90905 0.87091 1.19807 1.01834 0.93245 0.96489 1.20461 1.08436 1.00409 0.91501 1.20568 1.01565 0.97538 0.92000 1.22218 0.98781 0.97355 1.00723 1.23167 0.99096 0.95575 0.84275 1.85940 1.89680 1.36061 1.13678 0.93077 0.92096 0.91680 0.98072 0.97317 0.92869 0.77021 0.85516 0.84592 0.85507 0.89205 0.89707 0.87103 0.91611 0.91590 0.85636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.13 9.45 71.98 0.68 -4.45 16 2 C 0.16 6.39 2.22 44.99 0.10 6.49 16 3 H 0.06 2.44 6.48 -2.39 -0.02 2.43 16 4 C 0.02 1.13 4.52 29.85 0.13 1.27 16 5 C -0.52 -28.89 8.84 25.60 0.23 -28.66 16 6 H 0.05 2.88 7.74 -2.91 -0.02 2.85 16 7 C 0.01 0.31 5.46 84.65 0.46 0.78 16 8 N -0.93 -55.33 13.29 21.45 0.28 -55.05 16 9 Si 0.95 44.58 29.54 68.60 2.03 46.61 16 10 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 13 N -0.73 -27.37 4.97 -318.94 -1.59 -28.95 16 14 C 0.19 6.70 6.64 38.11 0.25 6.95 16 15 C -0.18 -6.09 8.87 22.35 0.20 -5.89 16 16 C -0.10 -3.22 9.93 22.41 0.22 -2.99 16 17 C 0.05 1.35 6.47 22.51 0.15 1.49 16 18 C -0.11 -3.16 5.75 -19.75 -0.11 -3.27 16 19 C -0.18 -5.78 9.51 22.44 0.21 -5.57 16 20 C -0.08 -1.60 5.86 29.90 0.18 -1.42 16 21 C -0.15 -2.46 6.19 30.75 0.19 -2.27 16 22 C 0.05 0.93 7.03 72.12 0.51 1.43 16 23 O -0.34 -8.97 10.27 -93.36 -0.96 -9.93 16 24 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.06 1.83 7.76 -2.39 -0.02 1.81 16 26 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 28 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 30 H 0.40 15.05 8.62 -92.70 -0.80 14.26 16 31 H 0.13 4.12 6.16 -2.91 -0.02 4.10 16 32 H 0.14 3.65 8.06 -2.91 -0.02 3.62 16 33 H 0.13 3.62 8.06 -2.91 -0.02 3.60 16 34 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.11 1.09 8.14 -2.38 -0.02 1.07 16 37 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.13 1.48 8.14 -2.38 -0.02 1.46 16 Total: -1.00 -63.92 318.71 3.40 -60.52 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: 0.24 Total: 22.91 kcal Atomic # 6 Polarization: -39.51 SS G_CDS: 3.39 Total: -36.11 kcal Atomic # 7 Polarization: -82.70 SS G_CDS: -1.30 Total: -84.00 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: -0.96 Total: -9.93 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -63.92 3.40 -60.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829178527.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.669 kcal (2) G-P(sol) polarization free energy of solvation -63.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds