Wall clock time and date at job start Mon Mar 30 2020 06:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47288 * 2 1 4 4 C 1.53002 * 109.46949 * 119.99404 * 2 1 3 5 5 C 1.50702 * 109.46854 * 185.00139 * 4 2 1 6 6 H 1.07996 * 120.00270 * 359.97438 * 5 4 2 7 7 C 1.37883 * 119.99542 * 180.02562 * 5 4 2 8 8 N 1.31505 * 120.00200 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99645 * 179.97438 * 7 5 4 10 10 H 1.48511 * 109.47358 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47324 * 119.99950 * 9 7 5 12 12 H 1.48506 * 109.47313 * 239.99996 * 9 7 5 13 13 O 1.42898 * 109.47159 * 239.99756 * 2 1 3 14 14 C 1.35900 * 117.00174 * 84.76650 * 13 2 1 15 15 C 1.38646 * 119.95082 * 354.58896 * 14 13 2 16 16 C 1.38108 * 119.87436 * 179.97438 * 15 14 13 17 17 C 1.38173 * 119.99889 * 359.97438 * 16 15 14 18 18 C 1.38502 * 120.32955 * 0.02562 * 17 16 15 19 19 C 1.38169 * 119.88540 * 359.97438 * 18 17 16 20 20 C 1.51360 * 109.78020 * 179.97438 * 19 18 17 21 21 C 1.54346 * 105.16640 * 17.18339 * 20 19 18 22 22 C 1.51378 * 130.36415 * 179.97438 * 18 17 16 23 23 H 1.09002 * 110.30508 * 281.76039 * 22 18 17 24 24 N 1.46909 * 110.30110 * 43.90879 * 22 18 17 25 25 H 1.09007 * 109.47088 * 300.00326 * 1 2 3 26 26 H 1.09001 * 109.47218 * 60.00472 * 1 2 3 27 27 H 1.08994 * 109.47207 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47161 * 305.00160 * 4 2 1 29 29 H 1.08999 * 109.46981 * 65.00491 * 4 2 1 30 30 H 0.97005 * 119.99910 * 180.02562 * 8 7 5 31 31 H 1.08001 * 120.06286 * 359.97438 * 15 14 13 32 32 H 1.07998 * 120.00532 * 179.97438 * 16 15 14 33 33 H 1.07997 * 119.83671 * 180.02562 * 17 16 15 34 34 H 1.08998 * 110.30258 * 136.10425 * 20 19 18 35 35 H 1.09003 * 110.29990 * 258.16160 * 20 19 18 36 36 H 1.09002 * 110.82272 * 215.43917 * 21 20 19 37 37 H 1.08995 * 110.82526 * 91.88164 * 21 20 19 38 38 H 1.00895 * 110.99892 * 298.54700 * 24 22 18 39 39 H 1.00896 * 110.99938 * 62.50317 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 3.5419 -0.6147 1.3128 6 1 4.0790 -0.0861 0.5393 7 6 4.2303 -1.1933 2.3580 8 7 3.5765 -1.8383 3.2991 9 14 6.0921 -1.0621 2.4363 10 1 6.5839 -0.2926 1.2651 11 1 6.4871 -0.3664 3.6874 12 1 6.6855 -2.4233 2.4183 13 8 2.0063 -0.6737 -1.1667 14 6 2.1079 0.0613 -2.3053 15 6 1.6513 1.3702 -2.3273 16 6 1.7558 2.1159 -3.4851 17 6 2.3149 1.5572 -4.6185 18 6 2.7723 0.2501 -4.6012 19 6 2.6700 -0.4999 -3.4453 20 6 3.2346 -1.8843 -3.6812 21 6 4.0857 -1.7602 -4.9629 22 6 3.4135 -0.5788 -5.6937 23 1 2.6548 -0.9447 -6.3855 24 7 4.4193 0.2153 -6.4121 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.6053 -0.2616 2.1370 29 1 1.7516 -1.7714 1.2057 30 1 4.0608 -2.2450 4.0347 31 1 1.2148 1.8060 -1.4407 32 1 1.4005 3.1355 -3.5048 33 1 2.3957 2.1428 -5.5223 34 1 3.8590 -2.1864 -2.8404 35 1 2.4275 -2.6017 -3.8293 36 1 4.0235 -2.6708 -5.5589 37 1 5.1217 -1.5254 -4.7189 38 1 3.9972 1.0167 -6.8566 39 1 5.1666 0.4960 -5.7950 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829189009.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:08 Heat of formation + Delta-G solvation = -48.396560 kcal Electronic energy + Delta-G solvation = -19659.978441 eV Core-core repulsion = 16758.943659 eV Total energy + Delta-G solvation = -2901.034782 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.59463 -39.69053 -36.73681 -35.47201 -33.92532 -33.10752 -30.53825 -29.64197 -29.36203 -26.55740 -25.37479 -23.73557 -22.73580 -21.73619 -20.79238 -18.80492 -18.52219 -17.25304 -16.97154 -16.54652 -16.39057 -16.06451 -15.78259 -15.34179 -15.06596 -14.45190 -14.14395 -13.90341 -13.71194 -13.58948 -13.44902 -13.26885 -12.85719 -12.71419 -12.66836 -12.40215 -12.35955 -12.14121 -11.99726 -11.82956 -11.68810 -11.31208 -11.08201 -10.62877 -9.87658 -9.47916 -8.97481 -8.24883 -6.33893 0.33319 0.52811 1.34151 1.35312 1.48027 2.36577 2.47210 2.78228 3.09667 3.39331 3.58449 3.84856 3.96258 4.04958 4.07852 4.17744 4.24471 4.27853 4.38088 4.45329 4.58796 4.72912 4.75617 4.86099 4.90394 4.97076 5.04703 5.13257 5.19334 5.24996 5.33395 5.42469 5.49879 5.50977 5.56630 5.72354 5.94865 6.15297 6.18105 6.57188 6.69422 6.77965 7.33646 8.87103 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.019018 B = 0.005994 C = 0.005118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.960244 B = 4669.873438 C = 5469.959761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.094 3.906 3 H 0.062 0.938 4 C 0.029 3.971 5 C -0.529 4.529 6 H 0.047 0.953 7 C 0.005 3.995 8 N -0.929 5.929 9 Si 0.958 3.042 10 H -0.270 1.270 11 H -0.272 1.272 12 H -0.277 1.277 13 O -0.320 6.320 14 C 0.123 3.877 15 C -0.224 4.224 16 C -0.081 4.081 17 C -0.150 4.150 18 C -0.102 4.102 19 C -0.157 4.157 20 C -0.077 4.077 21 C -0.104 4.104 22 C 0.141 3.859 23 H 0.108 0.892 24 N -0.833 5.833 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.025 0.975 29 H -0.002 1.002 30 H 0.265 0.735 31 H 0.132 0.868 32 H 0.153 0.847 33 H 0.148 0.852 34 H 0.052 0.948 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.072 0.928 38 H 0.351 0.649 39 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.721 6.540 -18.049 19.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.038 3.962 3 H 0.080 0.920 4 C -0.008 4.008 5 C -0.567 4.567 6 H 0.065 0.935 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.783 3.217 10 H -0.194 1.194 11 H -0.197 1.197 12 H -0.203 1.203 13 O -0.234 6.234 14 C 0.077 3.923 15 C -0.243 4.243 16 C -0.098 4.098 17 C -0.168 4.168 18 C -0.104 4.104 19 C -0.159 4.159 20 C -0.114 4.114 21 C -0.141 4.141 22 C 0.029 3.971 23 H 0.125 0.875 24 N -0.361 5.361 25 H 0.100 0.900 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.043 0.957 29 H 0.016 0.984 30 H 0.074 0.926 31 H 0.150 0.850 32 H 0.171 0.829 33 H 0.165 0.835 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.117 0.883 37 H 0.091 0.909 38 H 0.165 0.835 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.532 5.580 -18.319 19.316 hybrid contribution 0.347 0.700 1.731 1.899 sum -2.185 6.280 -16.588 17.871 Atomic orbital electron populations 1.22300 0.94176 1.02729 1.03124 1.22557 0.93929 0.95935 0.83731 0.91991 1.19109 0.95549 0.95054 0.91060 1.21427 0.93200 1.34406 1.07706 0.93498 1.25836 1.03427 0.94769 0.95244 1.70063 1.37453 1.36712 1.12757 0.85498 0.79807 0.78124 0.78256 1.19420 1.19706 1.20256 1.86193 1.80927 1.39271 1.17005 1.19260 0.95242 0.91389 0.86402 1.21436 1.07716 0.93907 1.01260 1.21153 0.97033 1.00220 0.91426 1.20720 1.02220 0.94355 0.99546 1.21696 0.98190 0.94705 0.95792 1.20142 1.04300 0.98847 0.92582 1.20927 0.99057 0.92961 0.98493 1.22347 0.98693 0.98874 0.94218 1.20983 0.93140 0.91881 0.91096 0.87453 1.59012 1.12764 1.28682 1.35675 0.89990 0.91157 0.92592 0.95663 0.98390 0.92610 0.84980 0.82932 0.83460 0.92951 0.90208 0.88276 0.90937 0.83513 0.84343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.73 9.16 71.98 0.66 -5.07 16 2 C 0.09 4.07 2.17 30.59 0.07 4.14 16 3 H 0.06 2.62 6.32 -2.38 -0.02 2.60 16 4 C 0.03 1.57 4.68 29.85 0.14 1.71 16 5 C -0.53 -31.09 8.88 25.60 0.23 -30.86 16 6 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 7 C 0.01 0.30 5.46 84.66 0.46 0.77 16 8 N -0.93 -56.82 13.29 21.45 0.28 -56.54 16 9 Si 0.96 45.59 29.54 68.60 2.03 47.62 16 10 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 11 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 13 O -0.32 -14.43 9.50 -92.43 -0.88 -15.31 16 14 C 0.12 4.68 6.60 22.54 0.15 4.83 16 15 C -0.22 -7.18 8.23 22.34 0.18 -7.00 16 16 C -0.08 -2.00 10.04 22.22 0.22 -1.78 16 17 C -0.15 -3.41 9.87 22.32 0.22 -3.19 16 18 C -0.10 -2.63 5.78 -19.60 -0.11 -2.75 16 19 C -0.16 -5.27 6.11 -19.50 -0.12 -5.39 16 20 C -0.08 -2.34 6.71 30.51 0.20 -2.13 16 21 C -0.10 -2.35 6.75 31.50 0.21 -2.14 16 22 C 0.14 2.91 4.01 44.83 0.18 3.09 16 23 H 0.11 1.99 8.14 -2.39 -0.02 1.98 16 24 N -0.83 -14.27 9.30 -169.00 -1.57 -15.84 16 25 H 0.08 2.55 8.14 -2.38 -0.02 2.53 16 26 H 0.07 2.10 6.89 -2.39 -0.02 2.09 16 27 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 30 H 0.26 15.15 8.31 -92.70 -0.77 14.37 16 31 H 0.13 4.08 5.41 -2.91 -0.02 4.06 16 32 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16 33 H 0.15 2.29 7.94 -2.91 -0.02 2.27 16 34 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.07 1.68 7.92 -2.39 -0.02 1.66 16 38 H 0.35 4.70 8.81 -89.70 -0.79 3.91 16 39 H 0.34 6.05 8.82 -89.70 -0.79 5.26 16 Total: -1.00 -68.21 318.75 2.03 -66.17 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -0.52 Total: 19.68 kcal Atomic # 6 Polarization: -48.48 SS G_CDS: 2.70 Total: -45.78 kcal Atomic # 7 Polarization: -71.09 SS G_CDS: -1.29 Total: -72.38 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -0.88 Total: -15.31 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -68.21 2.03 -66.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829189009.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.776 kcal (2) G-P(sol) polarization free energy of solvation -68.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds