Wall clock time and date at job start Mon Mar 30 2020 06:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47027 * 2 1 4 4 C 1.53003 * 109.47293 * 120.00426 * 2 1 3 5 5 C 1.50698 * 109.46824 * 184.99872 * 4 2 1 6 6 H 1.07995 * 120.00100 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99478 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00593 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99748 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47603 * 89.99714 * 9 7 5 11 11 H 1.48504 * 109.47041 * 209.99862 * 9 7 5 12 12 H 1.48502 * 109.47313 * 329.99681 * 9 7 5 13 13 O 1.42904 * 109.46603 * 239.99999 * 2 1 3 14 14 C 1.35899 * 116.99763 * 84.76277 * 13 2 1 15 15 C 1.38645 * 119.95327 * 354.58334 * 14 13 2 16 16 C 1.38116 * 119.87555 * 179.75104 * 15 14 13 17 17 C 1.38176 * 119.99530 * 0.25330 * 16 15 14 18 18 C 1.38501 * 120.33367 * 0.02562 * 17 16 15 19 19 C 1.38166 * 119.87893 * 359.97438 * 18 17 16 20 20 C 1.51361 * 109.77655 * 180.02562 * 19 18 17 21 21 C 1.54352 * 105.16581 * 342.81267 * 20 19 18 22 22 C 1.51374 * 130.36360 * 180.02562 * 18 17 16 23 23 H 1.08995 * 110.30248 * 78.24458 * 22 18 17 24 24 N 1.46903 * 110.30499 * 316.18766 * 22 18 17 25 25 H 1.09003 * 109.46876 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46851 * 299.99662 * 1 2 3 27 27 H 1.08992 * 109.47268 * 59.99922 * 1 2 3 28 28 H 1.09000 * 109.46386 * 304.99740 * 4 2 1 29 29 H 1.08995 * 109.47037 * 64.99759 * 4 2 1 30 30 H 0.96994 * 120.00681 * 180.02562 * 8 7 5 31 31 H 1.08005 * 120.06423 * 0.02923 * 15 14 13 32 32 H 1.07996 * 120.00219 * 180.27570 * 16 15 14 33 33 H 1.07996 * 119.83147 * 180.02562 * 17 16 15 34 34 H 1.09002 * 110.30308 * 223.89154 * 20 19 18 35 35 H 1.08996 * 110.39362 * 101.78216 * 20 19 18 36 36 H 1.08999 * 110.82425 * 268.11647 * 21 20 19 37 37 H 1.09000 * 110.98785 * 144.64015 * 21 20 19 38 38 H 1.00897 * 110.99950 * 61.45458 * 24 22 18 39 39 H 1.00904 * 110.99823 * 185.41168 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 1.2492 5 6 3.5420 -0.6150 1.3126 6 1 4.0789 -0.0855 0.5395 7 6 4.2304 -1.1928 2.3581 8 7 3.5764 -1.8363 3.3004 9 14 6.0920 -1.0604 2.4371 10 1 6.4699 0.1624 3.1904 11 1 6.6445 -2.2555 3.1240 12 1 6.6417 -0.9828 1.0598 13 8 2.0062 -0.6737 -1.1668 14 6 2.1076 0.0614 -2.3054 15 6 1.6510 1.3703 -2.3273 16 6 1.7595 2.1175 -3.4838 17 6 2.3176 1.5586 -4.6175 18 6 2.7698 0.2496 -4.6021 19 6 2.6634 -0.5018 -3.4475 20 6 3.2240 -1.8876 -3.6849 21 6 3.2818 -2.0424 -5.2195 22 6 3.4098 -0.5795 -5.6950 23 1 4.4595 -0.3094 -5.8091 24 7 2.6946 -0.3894 -6.9640 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 1.6054 -0.2618 2.1369 29 1 1.7517 -1.7715 1.2055 30 1 4.0607 -2.2425 4.0361 31 1 1.2153 1.8063 -1.4404 32 1 1.4085 3.1387 -3.5018 33 1 2.4015 2.1454 -5.5203 34 1 2.5651 -2.6411 -3.2532 35 1 4.2235 -1.9712 -3.2584 36 1 2.3650 -2.4944 -5.5982 37 1 4.1523 -2.6252 -5.5206 38 1 2.7344 0.5742 -7.2607 39 1 3.0566 -1.0031 -7.6785 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829189010.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:11 Heat of formation + Delta-G solvation = -27.038043 kcal Electronic energy + Delta-G solvation = -19608.620125 eV Core-core repulsion = 16708.511517 eV Total energy + Delta-G solvation = -2900.108607 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.27366 -38.24211 -35.55480 -33.51528 -32.70171 -31.47291 -29.37702 -28.40795 -27.44838 -25.52619 -23.43855 -22.33857 -21.36670 -20.50574 -19.29826 -17.22640 -16.36891 -15.94634 -15.79832 -15.59949 -15.13047 -14.54143 -14.36530 -13.80946 -13.54198 -13.33831 -12.75577 -12.64876 -12.13503 -11.91625 -11.80873 -11.55999 -11.45008 -11.31819 -11.15935 -10.85640 -10.82891 -10.70701 -10.65446 -10.38063 -9.96707 -9.35776 -9.10069 -8.95377 -8.38305 -8.28951 -7.58503 -6.01080 -4.02181 1.58976 1.83023 3.32265 3.38519 3.43463 3.95848 4.03108 4.46459 4.48956 4.60164 4.67580 5.07664 5.23909 5.26170 5.36006 5.41526 5.53764 5.64333 5.65651 5.78444 5.83468 5.92149 5.95107 6.05644 6.11453 6.28111 6.30652 6.42977 6.58163 6.66329 6.73186 6.79003 6.85057 6.99949 7.11607 7.29246 7.51745 7.61132 7.95655 8.20440 8.38253 9.01463 9.60992 11.10408 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.020708 B = 0.005653 C = 0.005004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.840054 B = 4952.224427 C = 5593.644721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.086 3.914 3 H 0.062 0.938 4 C 0.026 3.974 5 C -0.512 4.512 6 H 0.055 0.945 7 C 0.058 3.942 8 N -0.897 5.897 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 O -0.289 6.289 14 C 0.163 3.837 15 C -0.214 4.214 16 C -0.083 4.083 17 C -0.153 4.153 18 C -0.055 4.055 19 C -0.132 4.132 20 C -0.069 4.069 21 C -0.114 4.114 22 C 0.130 3.870 23 H 0.050 0.950 24 N -0.840 5.840 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.048 0.952 28 H 0.038 0.962 29 H 0.029 0.971 30 H 0.261 0.739 31 H 0.132 0.868 32 H 0.120 0.880 33 H 0.111 0.889 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.340 0.660 39 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.497 4.324 -16.933 17.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.030 3.970 3 H 0.080 0.920 4 C -0.011 4.011 5 C -0.550 4.550 6 H 0.073 0.927 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.199 1.199 13 O -0.201 6.201 14 C 0.116 3.884 15 C -0.233 4.233 16 C -0.101 4.101 17 C -0.171 4.171 18 C -0.056 4.056 19 C -0.133 4.133 20 C -0.107 4.107 21 C -0.152 4.152 22 C 0.019 3.981 23 H 0.068 0.932 24 N -0.370 5.370 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.149 0.851 32 H 0.138 0.862 33 H 0.129 0.871 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.153 0.847 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.067 3.762 -16.315 17.021 hybrid contribution 1.841 0.690 -0.092 1.968 sum -1.226 4.452 -16.407 17.044 Atomic orbital electron populations 1.22415 0.97078 1.02590 1.01412 1.22861 0.91789 0.97098 0.85231 0.92048 1.19260 0.96556 0.96491 0.88779 1.21116 0.91706 1.34363 1.07857 0.92658 1.24966 0.98390 0.95260 0.95680 1.69945 1.35546 1.36085 1.12065 0.86599 0.85809 0.77506 0.78173 1.20694 1.21177 1.19858 1.86281 1.79740 1.38059 1.16047 1.18772 0.92783 0.90091 0.86744 1.21265 1.07617 0.94432 0.99995 1.20729 0.98095 0.98999 0.92304 1.20243 1.04038 0.94501 0.98339 1.20102 0.97845 0.93539 0.94094 1.19676 1.03884 0.97630 0.92129 1.20811 1.01397 0.93707 0.94744 1.22410 1.02546 0.94641 0.95613 1.20831 0.94337 0.94800 0.88117 0.93196 1.58775 1.61894 1.11071 1.05217 0.91947 0.91451 0.93262 0.94435 0.95297 0.92960 0.85070 0.86216 0.87090 0.90373 0.90289 0.90024 0.91014 0.84728 0.84702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.10 9.17 37.16 0.34 -2.76 16 2 C 0.09 1.82 2.17 -26.73 -0.06 1.76 16 3 H 0.06 1.27 6.32 -51.93 -0.33 0.94 16 4 C 0.03 0.67 4.68 -27.88 -0.13 0.54 16 5 C -0.51 -14.59 8.88 -34.44 -0.31 -14.89 16 6 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 8 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 9 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 13 O -0.29 -6.33 9.50 -19.42 -0.18 -6.52 16 14 C 0.16 3.15 6.60 -39.17 -0.26 2.89 16 15 C -0.21 -3.63 8.23 -39.48 -0.32 -3.95 16 16 C -0.08 -1.20 10.04 -39.65 -0.40 -1.60 16 17 C -0.15 -2.14 9.87 -39.51 -0.39 -2.53 16 18 C -0.06 -0.83 5.79 -104.22 -0.60 -1.43 16 19 C -0.13 -2.31 6.11 -104.06 -0.64 -2.94 16 20 C -0.07 -1.07 6.71 -26.85 -0.18 -1.25 16 21 C -0.11 -1.38 6.75 -25.31 -0.17 -1.55 16 22 C 0.13 1.57 3.99 -67.82 -0.27 1.30 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 N -0.84 -8.31 9.25 -4.76 -0.04 -8.36 16 25 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.05 0.77 6.89 -51.93 -0.36 0.41 16 28 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.13 2.11 5.41 -52.48 -0.28 1.83 16 32 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 33 H 0.11 1.26 7.94 -52.49 -0.42 0.84 16 34 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.08 0.98 8.09 -51.93 -0.42 0.56 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.34 2.91 8.81 -39.29 -0.35 2.57 16 39 H 0.34 2.60 9.04 -39.29 -0.36 2.25 16 LS Contribution 319.07 15.07 4.81 4.81 Total: -1.00 -31.36 319.07 -9.04 -40.40 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -5.85 Total: 3.69 kcal Atomic # 6 Polarization: -21.38 SS G_CDS: -3.48 Total: -24.86 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: 0.69 Total: -34.47 kcal Atomic # 8 Polarization: -6.33 SS G_CDS: -0.18 Total: -6.52 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.36 -9.04 -40.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829189010.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.365 kcal (2) G-P(sol) polarization free energy of solvation -31.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds