Wall clock time and date at job start Mon Mar 30 2020 06:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47027 * 2 1 4 4 C 1.53003 * 109.47293 * 120.00426 * 2 1 3 5 5 C 1.50698 * 109.46824 * 184.99872 * 4 2 1 6 6 H 1.07995 * 120.00100 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99478 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00593 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99748 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47603 * 89.99714 * 9 7 5 11 11 H 1.48504 * 109.47041 * 209.99862 * 9 7 5 12 12 H 1.48502 * 109.47313 * 329.99681 * 9 7 5 13 13 O 1.42904 * 109.46603 * 239.99999 * 2 1 3 14 14 C 1.35899 * 116.99763 * 84.76277 * 13 2 1 15 15 C 1.38645 * 119.95327 * 354.58334 * 14 13 2 16 16 C 1.38116 * 119.87555 * 179.75104 * 15 14 13 17 17 C 1.38176 * 119.99530 * 0.25330 * 16 15 14 18 18 C 1.38501 * 120.33367 * 0.02562 * 17 16 15 19 19 C 1.38166 * 119.87893 * 359.97438 * 18 17 16 20 20 C 1.51361 * 109.77655 * 180.02562 * 19 18 17 21 21 C 1.54352 * 105.16581 * 342.81267 * 20 19 18 22 22 C 1.51374 * 130.36360 * 180.02562 * 18 17 16 23 23 H 1.08995 * 110.30248 * 78.24458 * 22 18 17 24 24 N 1.46903 * 110.30499 * 316.18766 * 22 18 17 25 25 H 1.09003 * 109.46876 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46851 * 299.99662 * 1 2 3 27 27 H 1.08992 * 109.47268 * 59.99922 * 1 2 3 28 28 H 1.09000 * 109.46386 * 304.99740 * 4 2 1 29 29 H 1.08995 * 109.47037 * 64.99759 * 4 2 1 30 30 H 0.96994 * 120.00681 * 180.02562 * 8 7 5 31 31 H 1.08005 * 120.06423 * 0.02923 * 15 14 13 32 32 H 1.07996 * 120.00219 * 180.27570 * 16 15 14 33 33 H 1.07996 * 119.83147 * 180.02562 * 17 16 15 34 34 H 1.09002 * 110.30308 * 223.89154 * 20 19 18 35 35 H 1.08996 * 110.39362 * 101.78216 * 20 19 18 36 36 H 1.08999 * 110.82425 * 268.11647 * 21 20 19 37 37 H 1.09000 * 110.98785 * 144.64015 * 21 20 19 38 38 H 1.00897 * 110.99950 * 61.45458 * 24 22 18 39 39 H 1.00904 * 110.99823 * 185.41168 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 1.2492 5 6 3.5420 -0.6150 1.3126 6 1 4.0789 -0.0855 0.5395 7 6 4.2304 -1.1928 2.3581 8 7 3.5764 -1.8363 3.3004 9 14 6.0920 -1.0604 2.4371 10 1 6.4699 0.1624 3.1904 11 1 6.6445 -2.2555 3.1240 12 1 6.6417 -0.9828 1.0598 13 8 2.0062 -0.6737 -1.1668 14 6 2.1076 0.0614 -2.3054 15 6 1.6510 1.3703 -2.3273 16 6 1.7595 2.1175 -3.4838 17 6 2.3176 1.5586 -4.6175 18 6 2.7698 0.2496 -4.6021 19 6 2.6634 -0.5018 -3.4475 20 6 3.2240 -1.8876 -3.6849 21 6 3.2818 -2.0424 -5.2195 22 6 3.4098 -0.5795 -5.6950 23 1 4.4595 -0.3094 -5.8091 24 7 2.6946 -0.3894 -6.9640 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 1.6054 -0.2618 2.1369 29 1 1.7517 -1.7715 1.2055 30 1 4.0607 -2.2425 4.0361 31 1 1.2153 1.8063 -1.4404 32 1 1.4085 3.1387 -3.5018 33 1 2.4015 2.1454 -5.5203 34 1 2.5651 -2.6411 -3.2532 35 1 4.2235 -1.9712 -3.2584 36 1 2.3650 -2.4944 -5.5982 37 1 4.1523 -2.6252 -5.5206 38 1 2.7344 0.5742 -7.2607 39 1 3.0566 -1.0031 -7.6785 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829189010.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:10 Heat of formation + Delta-G solvation = -46.808097 kcal Electronic energy + Delta-G solvation = -19609.477418 eV Core-core repulsion = 16708.511517 eV Total energy + Delta-G solvation = -2900.965901 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.53195 -39.62400 -36.71702 -35.44911 -33.92764 -33.13645 -30.58664 -29.61194 -29.34198 -26.58955 -25.35446 -23.72029 -22.67581 -21.74791 -20.69683 -18.67370 -18.45991 -17.18037 -16.97440 -16.53294 -16.45999 -16.29893 -15.87161 -15.10889 -14.88094 -14.48803 -14.19849 -14.08138 -13.73203 -13.58140 -13.42116 -13.14968 -12.91468 -12.67789 -12.54702 -12.41509 -12.32851 -12.01158 -11.92685 -11.89380 -11.69485 -11.28920 -11.06622 -10.60666 -9.83206 -9.37723 -8.93086 -8.22971 -6.32079 0.38716 0.58208 1.35671 1.37149 1.48458 2.38186 2.49706 2.82357 3.11411 3.50270 3.59966 3.68872 3.97831 4.05991 4.11195 4.20079 4.24574 4.37210 4.40117 4.48571 4.62021 4.62957 4.77477 4.86591 4.93869 4.99334 5.05115 5.15263 5.21533 5.24818 5.34897 5.45010 5.51863 5.55975 5.64805 5.74067 5.98845 6.17327 6.24156 6.66786 6.72412 6.79782 7.35301 8.88860 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.020708 B = 0.005653 C = 0.005004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.840054 B = 4952.224427 C = 5593.644721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.094 3.906 3 H 0.063 0.937 4 C 0.030 3.970 5 C -0.530 4.530 6 H 0.047 0.953 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.959 3.041 10 H -0.268 1.268 11 H -0.278 1.278 12 H -0.272 1.272 13 O -0.320 6.320 14 C 0.123 3.877 15 C -0.225 4.225 16 C -0.081 4.081 17 C -0.147 4.147 18 C -0.058 4.058 19 C -0.162 4.162 20 C -0.075 4.075 21 C -0.103 4.103 22 C 0.135 3.865 23 H 0.063 0.937 24 N -0.842 5.842 25 H 0.054 0.946 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.025 0.975 29 H -0.003 1.003 30 H 0.265 0.735 31 H 0.133 0.867 32 H 0.154 0.846 33 H 0.147 0.853 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.350 0.650 39 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.765 5.847 -19.445 20.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.038 3.962 3 H 0.081 0.919 4 C -0.007 4.007 5 C -0.568 4.568 6 H 0.066 0.934 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.784 3.216 10 H -0.193 1.193 11 H -0.204 1.204 12 H -0.196 1.196 13 O -0.234 6.234 14 C 0.078 3.922 15 C -0.244 4.244 16 C -0.099 4.099 17 C -0.165 4.165 18 C -0.058 4.058 19 C -0.163 4.163 20 C -0.112 4.112 21 C -0.141 4.141 22 C 0.024 3.976 23 H 0.081 0.919 24 N -0.374 5.374 25 H 0.073 0.927 26 H 0.100 0.900 27 H 0.088 0.912 28 H 0.043 0.957 29 H 0.016 0.984 30 H 0.074 0.926 31 H 0.151 0.849 32 H 0.172 0.828 33 H 0.164 0.836 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.114 0.886 38 H 0.164 0.836 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -2.342 5.297 -18.853 19.722 hybrid contribution 1.595 0.241 0.608 1.724 sum -0.747 5.537 -18.245 19.081 Atomic orbital electron populations 1.22304 0.94265 1.02682 1.03109 1.22561 0.93887 0.96004 0.83716 0.91878 1.19102 0.95560 0.95023 0.91037 1.21409 0.93208 1.34447 1.07761 0.93422 1.25839 1.03455 0.94750 0.95218 1.70058 1.37542 1.36775 1.12664 0.85538 0.79714 0.78101 0.78279 1.19325 1.20352 1.19642 1.86187 1.80979 1.39280 1.16984 1.19187 0.95357 0.91373 0.86328 1.21423 1.07872 0.93828 1.01276 1.21152 0.97116 1.00236 0.91362 1.20712 1.02127 0.94276 0.99391 1.20573 0.97113 0.94069 0.94066 1.20086 1.04535 0.98965 0.92685 1.20866 1.00167 0.92716 0.97491 1.22372 1.03696 0.95466 0.92584 1.20754 0.94831 0.93731 0.88267 0.91904 1.58682 1.61668 1.12269 1.04813 0.92664 0.89958 0.91203 0.95670 0.98432 0.92629 0.84884 0.82835 0.83576 0.92166 0.91386 0.90024 0.88570 0.83568 0.82995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.88 9.17 71.98 0.66 -5.22 16 2 C 0.09 4.13 2.17 30.60 0.07 4.20 16 3 H 0.06 2.70 6.32 -2.39 -0.02 2.68 16 4 C 0.03 1.61 4.68 29.85 0.14 1.75 16 5 C -0.53 -31.30 8.88 25.60 0.23 -31.07 16 6 H 0.05 2.82 7.74 -2.91 -0.02 2.79 16 7 C 0.01 0.31 5.46 84.65 0.46 0.77 16 8 N -0.93 -57.08 13.29 21.45 0.28 -56.80 16 9 Si 0.96 45.66 29.54 68.60 2.03 47.68 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 13 O -0.32 -14.75 9.50 -92.42 -0.88 -15.63 16 14 C 0.12 4.85 6.60 22.54 0.15 5.00 16 15 C -0.23 -7.48 8.23 22.34 0.18 -7.30 16 16 C -0.08 -2.13 10.04 22.23 0.22 -1.90 16 17 C -0.15 -3.64 9.87 22.32 0.22 -3.42 16 18 C -0.06 -1.62 5.79 -19.60 -0.11 -1.73 16 19 C -0.16 -5.69 6.11 -19.50 -0.12 -5.81 16 20 C -0.07 -2.37 6.71 30.52 0.20 -2.16 16 21 C -0.10 -2.33 6.75 31.51 0.21 -2.11 16 22 C 0.14 2.89 3.99 44.84 0.18 3.07 16 23 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 24 N -0.84 -13.70 9.25 -168.97 -1.56 -15.26 16 25 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.08 2.61 8.14 -2.38 -0.02 2.59 16 27 H 0.07 2.16 6.89 -2.39 -0.02 2.15 16 28 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 30 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 31 H 0.13 4.22 5.41 -2.91 -0.02 4.20 16 32 H 0.15 2.94 8.06 -2.91 -0.02 2.91 16 33 H 0.15 2.58 7.94 -2.91 -0.02 2.56 16 34 H 0.06 2.04 8.14 -2.39 -0.02 2.03 16 35 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.08 1.84 8.09 -2.39 -0.02 1.82 16 37 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.35 4.57 8.81 -89.70 -0.79 3.78 16 39 H 0.36 4.14 9.04 -89.69 -0.81 3.33 16 Total: -1.00 -70.02 319.07 2.02 -67.99 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -0.54 Total: 17.96 kcal Atomic # 6 Polarization: -48.64 SS G_CDS: 2.69 Total: -45.94 kcal Atomic # 7 Polarization: -70.78 SS G_CDS: -1.28 Total: -72.06 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.88 Total: -15.63 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.68 kcal Total: -70.02 2.02 -67.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829189010.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.184 kcal (2) G-P(sol) polarization free energy of solvation -70.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds