Wall clock time and date at job start Mon Mar 30 2020 06:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47029 * 2 1 4 4 C 1.53001 * 109.47312 * 240.00348 * 2 1 3 5 5 C 1.50701 * 109.47316 * 174.99962 * 4 2 1 6 6 H 1.07999 * 119.99612 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00221 * 179.97438 * 5 4 2 8 8 N 1.31509 * 119.99924 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00223 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46852 * 60.00309 * 9 7 5 11 11 H 1.48493 * 109.47330 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47279 * 300.00631 * 9 7 5 13 13 O 1.42900 * 109.47222 * 119.99721 * 2 1 3 14 14 C 1.35901 * 116.99920 * 275.24002 * 13 2 1 15 15 C 1.38641 * 119.95148 * 5.40830 * 14 13 2 16 16 C 1.38125 * 119.87189 * 179.74861 * 15 14 13 17 17 C 1.38179 * 119.99469 * 0.52621 * 16 15 14 18 18 C 1.38493 * 120.32866 * 359.72062 * 17 16 15 19 19 C 1.38169 * 119.89115 * 0.02967 * 18 17 16 20 20 C 1.51353 * 109.78269 * 179.97438 * 19 18 17 21 21 C 1.54351 * 105.16891 * 342.82260 * 20 19 18 22 22 C 1.51385 * 130.36159 * 180.02562 * 18 17 16 23 23 H 1.08996 * 110.30069 * 316.14789 * 22 18 17 24 24 N 1.46903 * 110.29924 * 78.19667 * 22 18 17 25 25 H 1.08998 * 109.47357 * 300.00144 * 1 2 3 26 26 H 1.09005 * 109.46969 * 60.00064 * 1 2 3 27 27 H 1.08994 * 109.46661 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46565 * 294.99731 * 4 2 1 29 29 H 1.08998 * 109.47526 * 54.99769 * 4 2 1 30 30 H 0.97003 * 120.00297 * 179.97438 * 8 7 5 31 31 H 1.08002 * 120.06552 * 359.97438 * 15 14 13 32 32 H 1.07994 * 119.99939 * 180.24786 * 16 15 14 33 33 H 1.07992 * 119.83109 * 179.75100 * 17 16 15 34 34 H 1.09005 * 110.30203 * 101.74035 * 20 19 18 35 35 H 1.09006 * 110.30765 * 223.89792 * 20 19 18 36 36 H 1.09000 * 110.81917 * 268.11534 * 21 20 19 37 37 H 1.08999 * 110.99898 * 144.63854 * 21 20 19 38 38 H 1.00900 * 111.00322 * 298.54709 * 24 22 18 39 39 H 1.00899 * 111.00338 * 62.50467 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5420 -0.6148 -1.3128 6 1 4.0789 -0.0854 -0.5396 7 6 4.2305 -1.1934 -2.3578 8 7 3.5766 -1.8376 -3.2995 9 14 6.0921 -1.0609 -2.4369 10 1 6.6846 -1.6861 -1.2271 11 1 6.5872 -1.7609 -3.6493 12 1 6.4845 0.3700 -2.4971 13 8 2.0064 -0.6736 1.1668 14 6 2.1078 0.0615 2.3054 15 6 1.6512 1.3704 2.3272 16 6 1.7503 2.1143 3.4868 17 6 2.3136 1.5572 4.6189 18 6 2.7758 0.2518 4.6001 19 6 2.6741 -0.4981 3.4441 20 6 3.2454 -1.8800 3.6780 21 6 4.0987 -1.7530 4.9579 22 6 3.4221 -0.5752 5.6910 23 1 4.1664 0.0168 6.2235 24 7 2.4032 -1.0716 6.6256 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0276 -0.0005 28 1 1.7517 -1.7714 -1.2056 29 1 1.6055 -0.2617 -2.1370 30 1 4.0610 -2.2443 -4.0350 31 1 1.2155 1.8063 1.4403 32 1 1.3916 3.1327 3.5072 33 1 2.3935 2.1426 5.5229 34 1 2.4418 -2.6008 3.8292 35 1 3.8692 -2.1791 2.8356 36 1 5.1331 -1.5135 4.7116 37 1 4.0450 -2.6632 5.5550 38 1 1.9237 -0.3073 7.0773 39 1 1.7501 -1.6822 6.1577 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829189011.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:13 Heat of formation + Delta-G solvation = -29.204677 kcal Electronic energy + Delta-G solvation = -19684.743381 eV Core-core repulsion = 16784.540821 eV Total energy + Delta-G solvation = -2900.202559 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.40060 -38.35598 -35.65875 -33.53452 -32.35140 -31.43371 -29.45627 -28.51278 -27.49103 -25.74751 -23.49258 -22.35093 -21.41109 -20.45680 -19.40240 -17.37010 -16.46459 -16.37704 -15.68797 -15.23117 -14.80054 -14.57739 -14.37139 -14.04181 -13.59926 -13.32890 -12.83353 -12.65804 -12.25580 -11.96357 -11.90014 -11.70175 -11.47780 -11.23112 -11.05718 -10.95151 -10.83545 -10.73773 -10.70675 -10.43161 -10.02834 -9.40688 -9.14983 -9.01452 -8.41263 -8.38725 -7.67455 -6.03291 -4.04775 1.47584 1.72474 3.33019 3.36951 3.40546 3.86955 3.98618 4.44608 4.47144 4.52205 4.83002 5.09551 5.18141 5.22152 5.33722 5.35539 5.44744 5.57933 5.72067 5.75303 5.82872 5.87131 5.95675 6.02807 6.05322 6.21556 6.25136 6.37784 6.52113 6.58473 6.65716 6.70268 6.78196 6.99553 7.05145 7.30709 7.47685 7.56852 7.92945 8.13931 8.34720 8.98501 9.58606 11.08096 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.020165 B = 0.005859 C = 0.005111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.179738 B = 4777.690813 C = 5477.001083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.085 3.915 3 H 0.062 0.938 4 C 0.026 3.974 5 C -0.514 4.514 6 H 0.054 0.946 7 C 0.059 3.941 8 N -0.897 5.897 9 Si 0.892 3.108 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.277 1.277 13 O -0.288 6.288 14 C 0.162 3.838 15 C -0.212 4.212 16 C -0.084 4.084 17 C -0.155 4.155 18 C -0.108 4.108 19 C -0.129 4.129 20 C -0.076 4.076 21 C -0.116 4.116 22 C 0.132 3.868 23 H 0.087 0.913 24 N -0.832 5.832 25 H 0.047 0.953 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.029 0.971 29 H 0.038 0.962 30 H 0.262 0.738 31 H 0.132 0.868 32 H 0.120 0.880 33 H 0.113 0.887 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.340 0.660 39 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.078 4.449 15.641 16.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.030 3.970 3 H 0.079 0.921 4 C -0.010 4.010 5 C -0.552 4.552 6 H 0.073 0.927 7 C -0.142 4.142 8 N -0.536 5.536 9 Si 0.720 3.280 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.203 1.203 13 O -0.201 6.201 14 C 0.114 3.886 15 C -0.230 4.230 16 C -0.102 4.102 17 C -0.174 4.174 18 C -0.110 4.110 19 C -0.130 4.130 20 C -0.113 4.113 21 C -0.153 4.153 22 C 0.020 3.980 23 H 0.105 0.895 24 N -0.359 5.359 25 H 0.066 0.934 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.047 0.953 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.150 0.850 32 H 0.138 0.862 33 H 0.131 0.869 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.152 0.848 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.388 3.775 15.828 16.621 hybrid contribution 0.164 0.957 -0.999 1.393 sum -3.224 4.732 14.829 15.896 Atomic orbital electron populations 1.22413 0.97068 1.02582 1.01401 1.22875 0.91772 0.97115 0.85245 0.92053 1.19254 0.96584 0.96464 0.88724 1.21066 0.91656 1.34561 1.07952 0.92733 1.24963 0.98435 0.95212 0.95636 1.69935 1.35671 1.35907 1.12085 0.86652 0.85710 0.78237 0.77423 1.20154 1.21231 1.20273 1.86292 1.79678 1.38038 1.16058 1.18847 0.92750 0.90110 0.86846 1.21301 1.07330 0.94489 0.99930 1.20770 0.98039 0.99063 0.92364 1.20347 1.03920 0.94489 0.98623 1.21249 0.99414 0.94215 0.96111 1.19815 1.03384 0.97731 0.92065 1.20916 0.98912 0.93213 0.98223 1.22374 0.99158 0.98167 0.95648 1.20894 0.93596 0.93809 0.89653 0.89501 1.59155 1.20371 1.23193 1.33203 0.93363 0.91386 0.91935 0.95312 0.94417 0.92870 0.85033 0.86192 0.86918 0.90782 0.89905 0.90461 0.89786 0.84783 0.84562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.02 9.17 37.16 0.34 -2.68 16 2 C 0.09 1.78 2.17 -26.73 -0.06 1.72 16 3 H 0.06 1.25 6.32 -51.93 -0.33 0.93 16 4 C 0.03 0.68 4.68 -27.88 -0.13 0.55 16 5 C -0.51 -14.56 8.88 -34.44 -0.31 -14.86 16 6 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 8 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 9 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 O -0.29 -6.18 9.50 -19.43 -0.18 -6.37 16 14 C 0.16 3.01 6.60 -39.17 -0.26 2.75 16 15 C -0.21 -3.46 8.23 -39.47 -0.32 -3.79 16 16 C -0.08 -1.17 10.04 -39.64 -0.40 -1.57 16 17 C -0.15 -2.05 10.04 -39.51 -0.40 -2.45 16 18 C -0.11 -1.51 5.74 -104.22 -0.60 -2.11 16 19 C -0.13 -2.14 6.11 -104.07 -0.64 -2.77 16 20 C -0.08 -1.13 6.71 -26.86 -0.18 -1.31 16 21 C -0.12 -1.40 6.71 -25.31 -0.17 -1.57 16 22 C 0.13 1.55 4.00 -67.82 -0.27 1.28 16 23 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 24 N -0.83 -8.52 9.29 -4.76 -0.04 -8.57 16 25 H 0.05 0.73 6.89 -51.93 -0.36 0.37 16 26 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.13 2.06 5.41 -52.49 -0.28 1.78 16 32 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 33 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.08 0.92 8.08 -51.93 -0.42 0.50 16 38 H 0.34 3.04 9.06 -39.29 -0.36 2.68 16 39 H 0.34 3.50 8.97 -39.29 -0.35 3.15 16 LS Contribution 319.50 15.07 4.81 4.81 Total: -1.00 -30.40 319.50 -9.05 -39.45 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -5.87 Total: 4.98 kcal Atomic # 6 Polarization: -21.74 SS G_CDS: -3.48 Total: -25.23 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: 0.69 Total: -34.54 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: -0.18 Total: -6.37 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.40 -9.05 -39.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829189011.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.244 kcal (2) G-P(sol) polarization free energy of solvation -30.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds