Wall clock time and date at job start Mon Mar 30 2020 06:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47029 * 2 1 4 4 C 1.53001 * 109.47312 * 240.00348 * 2 1 3 5 5 C 1.50701 * 109.47316 * 174.99962 * 4 2 1 6 6 H 1.07999 * 119.99612 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00221 * 179.97438 * 5 4 2 8 8 N 1.31509 * 119.99924 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00223 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46852 * 60.00309 * 9 7 5 11 11 H 1.48493 * 109.47330 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47279 * 300.00631 * 9 7 5 13 13 O 1.42900 * 109.47222 * 119.99721 * 2 1 3 14 14 C 1.35901 * 116.99920 * 275.24002 * 13 2 1 15 15 C 1.38641 * 119.95148 * 5.40830 * 14 13 2 16 16 C 1.38125 * 119.87189 * 179.74861 * 15 14 13 17 17 C 1.38179 * 119.99469 * 0.52621 * 16 15 14 18 18 C 1.38493 * 120.32866 * 359.72062 * 17 16 15 19 19 C 1.38169 * 119.89115 * 0.02967 * 18 17 16 20 20 C 1.51353 * 109.78269 * 179.97438 * 19 18 17 21 21 C 1.54351 * 105.16891 * 342.82260 * 20 19 18 22 22 C 1.51385 * 130.36159 * 180.02562 * 18 17 16 23 23 H 1.08996 * 110.30069 * 316.14789 * 22 18 17 24 24 N 1.46903 * 110.29924 * 78.19667 * 22 18 17 25 25 H 1.08998 * 109.47357 * 300.00144 * 1 2 3 26 26 H 1.09005 * 109.46969 * 60.00064 * 1 2 3 27 27 H 1.08994 * 109.46661 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46565 * 294.99731 * 4 2 1 29 29 H 1.08998 * 109.47526 * 54.99769 * 4 2 1 30 30 H 0.97003 * 120.00297 * 179.97438 * 8 7 5 31 31 H 1.08002 * 120.06552 * 359.97438 * 15 14 13 32 32 H 1.07994 * 119.99939 * 180.24786 * 16 15 14 33 33 H 1.07992 * 119.83109 * 179.75100 * 17 16 15 34 34 H 1.09005 * 110.30203 * 101.74035 * 20 19 18 35 35 H 1.09006 * 110.30765 * 223.89792 * 20 19 18 36 36 H 1.09000 * 110.81917 * 268.11534 * 21 20 19 37 37 H 1.08999 * 110.99898 * 144.63854 * 21 20 19 38 38 H 1.00900 * 111.00322 * 298.54709 * 24 22 18 39 39 H 1.00899 * 111.00338 * 62.50467 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5420 -0.6148 -1.3128 6 1 4.0789 -0.0854 -0.5396 7 6 4.2305 -1.1934 -2.3578 8 7 3.5766 -1.8376 -3.2995 9 14 6.0921 -1.0609 -2.4369 10 1 6.6846 -1.6861 -1.2271 11 1 6.5872 -1.7609 -3.6493 12 1 6.4845 0.3700 -2.4971 13 8 2.0064 -0.6736 1.1668 14 6 2.1078 0.0615 2.3054 15 6 1.6512 1.3704 2.3272 16 6 1.7503 2.1143 3.4868 17 6 2.3136 1.5572 4.6189 18 6 2.7758 0.2518 4.6001 19 6 2.6741 -0.4981 3.4441 20 6 3.2454 -1.8800 3.6780 21 6 4.0987 -1.7530 4.9579 22 6 3.4221 -0.5752 5.6910 23 1 4.1664 0.0168 6.2235 24 7 2.4032 -1.0716 6.6256 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0276 -0.0005 28 1 1.7517 -1.7714 -1.2056 29 1 1.6055 -0.2617 -2.1370 30 1 4.0610 -2.2443 -4.0350 31 1 1.2155 1.8063 1.4403 32 1 1.3916 3.1327 3.5072 33 1 2.3935 2.1426 5.5229 34 1 2.4418 -2.6008 3.8292 35 1 3.8692 -2.1791 2.8356 36 1 5.1331 -1.5135 4.7116 37 1 4.0450 -2.6632 5.5550 38 1 1.9237 -0.3073 7.0773 39 1 1.7501 -1.6822 6.1577 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829189011.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:12 Heat of formation + Delta-G solvation = -48.010640 kcal Electronic energy + Delta-G solvation = -19685.558869 eV Core-core repulsion = 16784.540821 eV Total energy + Delta-G solvation = -2901.018047 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.61256 -39.71380 -36.80472 -35.46888 -33.74689 -32.89990 -30.62468 -29.68038 -29.36054 -26.79895 -25.37632 -23.75455 -22.66284 -21.65196 -20.77533 -18.74936 -18.50125 -17.51577 -16.94940 -16.51715 -16.36773 -16.09519 -15.56083 -15.22144 -14.95357 -14.54509 -14.25476 -14.00746 -13.71769 -13.65326 -13.46136 -13.25861 -12.92811 -12.68344 -12.63414 -12.41112 -12.18762 -12.08772 -11.93278 -11.81628 -11.75597 -11.31862 -11.09461 -10.61951 -9.96051 -9.46386 -8.97127 -8.24283 -6.33547 0.32127 0.52972 1.35035 1.37770 1.45924 2.37052 2.46919 2.77850 3.10143 3.42613 3.57844 3.84082 3.96288 4.05747 4.07943 4.18391 4.20334 4.31132 4.37663 4.43892 4.59372 4.72454 4.81358 4.89451 4.89965 4.97037 5.07128 5.12876 5.17136 5.24371 5.32972 5.42600 5.48842 5.51466 5.59534 5.72298 5.95386 6.15421 6.16174 6.55085 6.69343 6.77881 7.33904 8.87268 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.020165 B = 0.005859 C = 0.005111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.179738 B = 4777.690813 C = 5477.001083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.094 3.906 3 H 0.062 0.938 4 C 0.030 3.970 5 C -0.532 4.532 6 H 0.047 0.953 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.958 3.042 10 H -0.273 1.273 11 H -0.277 1.277 12 H -0.266 1.266 13 O -0.320 6.320 14 C 0.122 3.878 15 C -0.222 4.222 16 C -0.082 4.082 17 C -0.146 4.146 18 C -0.103 4.103 19 C -0.154 4.154 20 C -0.078 4.078 21 C -0.108 4.108 22 C 0.139 3.861 23 H 0.103 0.897 24 N -0.826 5.826 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.055 0.945 28 H -0.003 1.003 29 H 0.025 0.975 30 H 0.265 0.735 31 H 0.132 0.868 32 H 0.153 0.847 33 H 0.148 0.852 34 H 0.076 0.924 35 H 0.051 0.949 36 H 0.078 0.922 37 H 0.098 0.902 38 H 0.351 0.649 39 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.577 6.066 18.150 19.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.039 3.961 3 H 0.080 0.920 4 C -0.007 4.007 5 C -0.570 4.570 6 H 0.065 0.935 7 C -0.192 4.192 8 N -0.570 5.570 9 Si 0.782 3.218 10 H -0.199 1.199 11 H -0.202 1.202 12 H -0.191 1.191 13 O -0.234 6.234 14 C 0.076 3.924 15 C -0.241 4.241 16 C -0.100 4.100 17 C -0.165 4.165 18 C -0.105 4.105 19 C -0.155 4.155 20 C -0.115 4.115 21 C -0.146 4.146 22 C 0.028 3.972 23 H 0.121 0.879 24 N -0.354 5.354 25 H 0.088 0.912 26 H 0.100 0.900 27 H 0.074 0.926 28 H 0.016 0.984 29 H 0.043 0.957 30 H 0.074 0.926 31 H 0.150 0.850 32 H 0.171 0.829 33 H 0.166 0.834 34 H 0.095 0.905 35 H 0.070 0.930 36 H 0.097 0.903 37 H 0.117 0.883 38 H 0.164 0.836 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.900 5.407 18.361 19.359 hybrid contribution -0.015 0.471 -1.692 1.756 sum -2.914 5.878 16.669 17.913 Atomic orbital electron populations 1.22298 0.94176 1.02707 1.03119 1.22556 0.93922 0.95936 0.83731 0.91987 1.19097 0.95524 0.95021 0.91058 1.21373 0.93216 1.34562 1.07811 0.93476 1.25831 1.03428 0.94742 0.95208 1.70049 1.37604 1.36630 1.12674 0.85612 0.79739 0.78769 0.77649 1.19870 1.20222 1.19124 1.86196 1.80956 1.39257 1.17007 1.19255 0.95368 0.91394 0.86420 1.21446 1.07590 0.93889 1.01191 1.21175 0.97117 1.00237 0.91430 1.20799 1.01882 0.94194 0.99612 1.21635 0.98650 0.94550 0.95693 1.20161 1.03907 0.98859 0.92620 1.20937 0.98984 0.92914 0.98645 1.22361 0.98697 0.99306 0.94245 1.20884 0.94031 0.93167 0.89156 0.87900 1.59153 1.20412 1.23471 1.32407 0.91153 0.90008 0.92608 0.98435 0.95696 0.92604 0.84987 0.82933 0.83393 0.90544 0.92994 0.90287 0.88344 0.83590 0.84541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.70 9.17 71.98 0.66 -5.04 16 2 C 0.09 4.07 2.17 30.60 0.07 4.14 16 3 H 0.06 2.61 6.32 -2.39 -0.02 2.60 16 4 C 0.03 1.61 4.68 29.85 0.14 1.75 16 5 C -0.53 -31.23 8.88 25.60 0.23 -31.00 16 6 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 7 C 0.01 0.35 5.46 84.65 0.46 0.81 16 8 N -0.93 -56.87 13.29 21.45 0.28 -56.59 16 9 Si 0.96 45.56 29.54 68.60 2.03 47.59 16 10 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 12 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 13 O -0.32 -14.39 9.50 -92.43 -0.88 -15.27 16 14 C 0.12 4.59 6.60 22.54 0.15 4.74 16 15 C -0.22 -7.08 8.23 22.34 0.18 -6.89 16 16 C -0.08 -2.02 10.04 22.23 0.22 -1.80 16 17 C -0.15 -3.34 10.04 22.32 0.22 -3.12 16 18 C -0.10 -2.66 5.74 -19.60 -0.11 -2.77 16 19 C -0.15 -5.11 6.11 -19.50 -0.12 -5.23 16 20 C -0.08 -2.36 6.71 30.51 0.20 -2.16 16 21 C -0.11 -2.48 6.71 31.51 0.21 -2.26 16 22 C 0.14 2.88 4.00 44.85 0.18 3.06 16 23 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 24 N -0.83 -14.41 9.29 -168.97 -1.57 -15.98 16 25 H 0.07 2.09 6.89 -2.39 -0.02 2.07 16 26 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 27 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 29 H 0.02 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 31 H 0.13 4.06 5.41 -2.91 -0.02 4.04 16 32 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 33 H 0.15 2.37 8.06 -2.91 -0.02 2.34 16 34 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 35 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 36 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.10 1.96 8.08 -2.39 -0.02 1.94 16 38 H 0.35 4.97 9.06 -89.69 -0.81 4.16 16 39 H 0.34 6.20 8.97 -89.69 -0.80 5.39 16 Total: -1.00 -67.78 319.50 2.00 -65.78 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: -0.56 Total: 20.25 kcal Atomic # 6 Polarization: -48.48 SS G_CDS: 2.70 Total: -45.78 kcal Atomic # 7 Polarization: -71.28 SS G_CDS: -1.29 Total: -72.57 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.88 Total: -15.27 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -67.78 2.00 -65.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829189011.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.766 kcal (2) G-P(sol) polarization free energy of solvation -67.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds