Wall clock time and date at job start Mon Mar 30 2020 06:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09009 * 109.47089 * 2 1 4 4 C 1.52992 * 109.47182 * 240.00035 * 2 1 3 5 5 C 1.50699 * 109.47467 * 175.00098 * 4 2 1 6 6 H 1.08003 * 119.99878 * 359.97438 * 5 4 2 7 7 C 1.37873 * 120.00204 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00339 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00077 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46980 * 359.97438 * 9 7 5 11 11 H 1.48507 * 109.47167 * 119.99608 * 9 7 5 12 12 H 1.48496 * 109.47214 * 239.99817 * 9 7 5 13 13 O 1.42905 * 109.47422 * 119.99757 * 2 1 3 14 14 C 1.35901 * 117.00033 * 275.12380 * 13 2 1 15 15 C 1.38653 * 119.95087 * 5.47589 * 14 13 2 16 16 C 1.38114 * 119.87131 * 179.72922 * 15 14 13 17 17 C 1.38175 * 119.99770 * 0.02562 * 16 15 14 18 18 C 1.38497 * 120.33459 * 0.02562 * 17 16 15 19 19 C 1.38174 * 119.88209 * 359.95728 * 18 17 16 20 20 C 1.51359 * 109.78407 * 179.97438 * 19 18 17 21 21 C 1.54351 * 105.16649 * 342.83831 * 20 19 18 22 22 C 1.51381 * 130.36701 * 179.97438 * 18 17 16 23 23 H 1.09004 * 110.30399 * 78.25635 * 22 18 17 24 24 N 1.46896 * 110.30130 * 316.10019 * 22 18 17 25 25 H 1.08995 * 109.46815 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47029 * 299.99738 * 1 2 3 27 27 H 1.08992 * 109.47076 * 59.99987 * 1 2 3 28 28 H 1.09001 * 109.47049 * 295.00055 * 4 2 1 29 29 H 1.09003 * 109.47615 * 54.99734 * 4 2 1 30 30 H 0.97000 * 120.00618 * 180.02562 * 8 7 5 31 31 H 1.07995 * 120.06041 * 359.74802 * 15 14 13 32 32 H 1.07995 * 120.00199 * 180.02562 * 16 15 14 33 33 H 1.07996 * 119.83243 * 179.97438 * 17 16 15 34 34 H 1.09001 * 110.31279 * 223.91319 * 20 19 18 35 35 H 1.08996 * 110.37548 * 101.79931 * 20 19 18 36 36 H 1.08995 * 110.82868 * 268.10300 * 21 20 19 37 37 H 1.08993 * 110.82285 * 144.54266 * 21 20 19 38 38 H 1.00897 * 110.99985 * 61.45676 * 24 22 18 39 39 H 1.00898 * 110.99954 * 185.40694 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6149 -1.3127 6 1 4.0789 -0.0855 -0.5396 7 6 4.2303 -1.1926 -2.3583 8 7 3.5764 -1.8369 -3.3000 9 14 6.0919 -1.0602 -2.4374 10 1 6.5836 -0.2900 -1.2668 11 1 6.6862 -2.4211 -2.4200 12 1 6.4860 -0.3640 -3.6884 13 8 2.0064 -0.6736 1.1668 14 6 2.1102 0.0620 2.3048 15 6 1.6544 1.3714 2.3266 16 6 1.7555 2.1157 3.4856 17 6 2.3105 1.5554 4.6202 18 6 2.7681 0.2483 4.6028 19 6 2.6688 -0.5004 3.4458 20 6 3.2340 -1.8846 3.6813 21 6 4.0819 -1.7616 4.9652 22 6 3.4062 -0.5817 5.6962 23 1 2.6456 -0.9488 6.3852 24 7 4.4097 0.2116 6.4184 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.7516 -1.7715 -1.2055 29 1 1.6054 -0.2618 -2.1370 30 1 4.0607 -2.2437 -4.0355 31 1 1.2209 1.8081 1.4392 32 1 1.4008 3.1355 3.5051 33 1 2.3887 2.1400 5.5249 34 1 3.8607 -2.1854 2.8416 35 1 2.4282 -2.6038 3.8277 36 1 5.1183 -1.5258 4.7241 37 1 4.0189 -2.6727 5.5600 38 1 3.9861 1.0123 6.8628 39 1 4.9036 -0.3558 7.0908 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829189012.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:14 Heat of formation + Delta-G solvation = -26.800891 kcal Electronic energy + Delta-G solvation = -19631.200206 eV Core-core repulsion = 16731.101883 eV Total energy + Delta-G solvation = -2900.098323 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.27128 -38.23911 -35.55128 -33.50913 -32.69210 -31.46877 -29.37472 -28.40249 -27.44636 -25.52199 -23.43341 -22.33224 -21.36797 -20.50324 -19.28826 -17.24969 -16.34363 -15.95764 -15.74426 -15.59164 -15.13372 -14.54343 -14.39692 -13.76690 -13.58029 -13.29409 -12.70018 -12.65915 -12.20384 -11.88648 -11.85885 -11.49711 -11.44396 -11.31400 -11.11522 -10.87340 -10.84564 -10.69438 -10.63966 -10.35192 -9.95992 -9.35400 -9.07771 -8.92922 -8.37473 -8.28628 -7.58576 -6.00030 -4.00994 1.58850 1.83065 3.33328 3.40842 3.47243 3.91936 4.06939 4.48345 4.50047 4.61770 4.68326 5.07578 5.23591 5.26205 5.37244 5.41445 5.53824 5.63316 5.65483 5.77945 5.83208 5.93013 5.94876 6.07354 6.11769 6.27549 6.31762 6.44375 6.57964 6.66096 6.73365 6.79364 6.85181 7.02159 7.12058 7.31365 7.52311 7.61553 7.97061 8.20550 8.39209 9.03117 9.62480 11.11452 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.019029 B = 0.005970 C = 0.005096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.075485 B = 4689.142158 C = 5492.948980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.086 3.914 3 H 0.062 0.938 4 C 0.026 3.974 5 C -0.511 4.511 6 H 0.056 0.944 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.284 1.284 13 O -0.289 6.289 14 C 0.163 3.837 15 C -0.214 4.214 16 C -0.083 4.083 17 C -0.153 4.153 18 C -0.055 4.055 19 C -0.132 4.132 20 C -0.070 4.070 21 C -0.115 4.115 22 C 0.131 3.869 23 H 0.049 0.951 24 N -0.839 5.839 25 H 0.061 0.939 26 H 0.048 0.952 27 H 0.067 0.933 28 H 0.028 0.972 29 H 0.038 0.962 30 H 0.260 0.740 31 H 0.132 0.868 32 H 0.120 0.880 33 H 0.111 0.889 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.340 0.660 39 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.662 3.924 17.324 18.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.030 3.970 3 H 0.080 0.920 4 C -0.011 4.011 5 C -0.549 4.549 6 H 0.074 0.926 7 C -0.143 4.143 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.210 1.210 13 O -0.201 6.201 14 C 0.116 3.884 15 C -0.233 4.233 16 C -0.101 4.101 17 C -0.171 4.171 18 C -0.056 4.056 19 C -0.133 4.133 20 C -0.108 4.108 21 C -0.153 4.153 22 C 0.020 3.980 23 H 0.067 0.933 24 N -0.369 5.369 25 H 0.080 0.920 26 H 0.067 0.933 27 H 0.086 0.914 28 H 0.047 0.953 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.149 0.851 32 H 0.138 0.862 33 H 0.129 0.871 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.153 0.847 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.256 3.713 16.399 17.126 hybrid contribution 0.318 0.142 0.571 0.669 sum -2.938 3.855 16.970 17.648 Atomic orbital electron populations 1.22410 0.97100 1.02547 1.01396 1.22862 0.91746 0.97146 0.85245 0.92019 1.19265 0.96613 0.96468 0.88776 1.21162 0.91684 1.34271 1.07832 0.92553 1.24967 0.98424 0.95271 0.95663 1.69958 1.35445 1.36146 1.12146 0.86547 0.85835 0.77856 0.77920 1.19653 1.20951 1.21041 1.86280 1.79755 1.37979 1.16116 1.18776 0.92793 0.90105 0.86717 1.21265 1.07603 0.94514 0.99926 1.20728 0.98092 0.98989 0.92318 1.20243 1.03881 0.94405 0.98597 1.20114 0.97407 0.93762 0.94322 1.19680 1.04070 0.97606 0.91949 1.20822 0.98759 0.93366 0.97821 1.22421 1.00490 0.96339 0.96035 1.20828 0.91844 0.92253 0.93063 0.93310 1.58757 1.30916 1.12159 1.35092 0.91973 0.93311 0.91435 0.95317 0.94434 0.93032 0.85072 0.86220 0.87091 0.89894 0.90728 0.89831 0.91061 0.84749 0.84668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.07 9.17 37.16 0.34 -2.72 16 2 C 0.09 1.81 2.17 -26.73 -0.06 1.75 16 3 H 0.06 1.28 6.31 -51.92 -0.33 0.96 16 4 C 0.03 0.66 4.68 -27.89 -0.13 0.53 16 5 C -0.51 -14.65 8.88 -34.44 -0.31 -14.95 16 6 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 8 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 9 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 10 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 13 O -0.29 -6.32 9.50 -19.43 -0.18 -6.51 16 14 C 0.16 3.14 6.60 -39.17 -0.26 2.88 16 15 C -0.21 -3.63 8.23 -39.47 -0.32 -3.95 16 16 C -0.08 -1.21 10.04 -39.65 -0.40 -1.60 16 17 C -0.15 -2.14 9.87 -39.51 -0.39 -2.53 16 18 C -0.06 -0.83 5.79 -104.22 -0.60 -1.44 16 19 C -0.13 -2.30 6.11 -104.06 -0.64 -2.94 16 20 C -0.07 -1.08 6.71 -26.85 -0.18 -1.26 16 21 C -0.12 -1.42 6.75 -25.31 -0.17 -1.59 16 22 C 0.13 1.58 3.99 -67.82 -0.27 1.31 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 N -0.84 -8.66 9.24 -4.76 -0.04 -8.70 16 25 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.05 0.75 6.90 -51.93 -0.36 0.39 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.13 2.11 5.42 -52.49 -0.28 1.83 16 32 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 33 H 0.11 1.26 7.94 -52.49 -0.42 0.84 16 34 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.08 1.10 8.09 -51.93 -0.42 0.68 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.34 3.00 8.81 -39.29 -0.35 2.65 16 39 H 0.34 2.73 9.04 -39.29 -0.36 2.37 16 LS Contribution 319.08 15.07 4.81 4.81 Total: -1.00 -31.63 319.08 -9.04 -40.68 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -5.85 Total: 3.76 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: -3.48 Total: -24.96 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 0.69 Total: -34.92 kcal Atomic # 8 Polarization: -6.32 SS G_CDS: -0.18 Total: -6.51 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.63 -9.04 -40.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829189012.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.875 kcal (2) G-P(sol) polarization free energy of solvation -31.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds