Wall clock time and date at job start Mon Mar 30 2020 06:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09009 * 109.47089 * 2 1 4 4 C 1.52992 * 109.47182 * 240.00035 * 2 1 3 5 5 C 1.50699 * 109.47467 * 175.00098 * 4 2 1 6 6 H 1.08003 * 119.99878 * 359.97438 * 5 4 2 7 7 C 1.37873 * 120.00204 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00339 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00077 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46980 * 359.97438 * 9 7 5 11 11 H 1.48507 * 109.47167 * 119.99608 * 9 7 5 12 12 H 1.48496 * 109.47214 * 239.99817 * 9 7 5 13 13 O 1.42905 * 109.47422 * 119.99757 * 2 1 3 14 14 C 1.35901 * 117.00033 * 275.12380 * 13 2 1 15 15 C 1.38653 * 119.95087 * 5.47589 * 14 13 2 16 16 C 1.38114 * 119.87131 * 179.72922 * 15 14 13 17 17 C 1.38175 * 119.99770 * 0.02562 * 16 15 14 18 18 C 1.38497 * 120.33459 * 0.02562 * 17 16 15 19 19 C 1.38174 * 119.88209 * 359.95728 * 18 17 16 20 20 C 1.51359 * 109.78407 * 179.97438 * 19 18 17 21 21 C 1.54351 * 105.16649 * 342.83831 * 20 19 18 22 22 C 1.51381 * 130.36701 * 179.97438 * 18 17 16 23 23 H 1.09004 * 110.30399 * 78.25635 * 22 18 17 24 24 N 1.46896 * 110.30130 * 316.10019 * 22 18 17 25 25 H 1.08995 * 109.46815 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47029 * 299.99738 * 1 2 3 27 27 H 1.08992 * 109.47076 * 59.99987 * 1 2 3 28 28 H 1.09001 * 109.47049 * 295.00055 * 4 2 1 29 29 H 1.09003 * 109.47615 * 54.99734 * 4 2 1 30 30 H 0.97000 * 120.00618 * 180.02562 * 8 7 5 31 31 H 1.07995 * 120.06041 * 359.74802 * 15 14 13 32 32 H 1.07995 * 120.00199 * 180.02562 * 16 15 14 33 33 H 1.07996 * 119.83243 * 179.97438 * 17 16 15 34 34 H 1.09001 * 110.31279 * 223.91319 * 20 19 18 35 35 H 1.08996 * 110.37548 * 101.79931 * 20 19 18 36 36 H 1.08995 * 110.82868 * 268.10300 * 21 20 19 37 37 H 1.08993 * 110.82285 * 144.54266 * 21 20 19 38 38 H 1.00897 * 110.99985 * 61.45676 * 24 22 18 39 39 H 1.00898 * 110.99954 * 185.40694 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6149 -1.3127 6 1 4.0789 -0.0855 -0.5396 7 6 4.2303 -1.1926 -2.3583 8 7 3.5764 -1.8369 -3.3000 9 14 6.0919 -1.0602 -2.4374 10 1 6.5836 -0.2900 -1.2668 11 1 6.6862 -2.4211 -2.4200 12 1 6.4860 -0.3640 -3.6884 13 8 2.0064 -0.6736 1.1668 14 6 2.1102 0.0620 2.3048 15 6 1.6544 1.3714 2.3266 16 6 1.7555 2.1157 3.4856 17 6 2.3105 1.5554 4.6202 18 6 2.7681 0.2483 4.6028 19 6 2.6688 -0.5004 3.4458 20 6 3.2340 -1.8846 3.6813 21 6 4.0819 -1.7616 4.9652 22 6 3.4062 -0.5817 5.6962 23 1 2.6456 -0.9488 6.3852 24 7 4.4097 0.2116 6.4184 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.7516 -1.7715 -1.2055 29 1 1.6054 -0.2618 -2.1370 30 1 4.0607 -2.2437 -4.0355 31 1 1.2209 1.8081 1.4392 32 1 1.4008 3.1355 3.5051 33 1 2.3887 2.1400 5.5249 34 1 3.8607 -2.1854 2.8416 35 1 2.4282 -2.6038 3.8277 36 1 5.1183 -1.5258 4.7241 37 1 4.0189 -2.6727 5.5600 38 1 3.9861 1.0123 6.8628 39 1 4.9036 -0.3558 7.0908 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829189012.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:14 Heat of formation + Delta-G solvation = -46.888538 kcal Electronic energy + Delta-G solvation = -19632.071272 eV Core-core repulsion = 16731.101883 eV Total energy + Delta-G solvation = -2900.969389 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.52906 -39.62141 -36.71716 -35.45210 -33.92934 -33.13834 -30.58489 -29.61182 -29.34451 -26.58894 -25.35631 -23.71895 -22.67851 -21.74859 -20.68549 -18.69489 -18.46144 -17.19829 -16.89910 -16.54032 -16.46226 -16.30381 -15.93573 -15.10175 -14.85630 -14.43539 -14.26534 -14.04759 -13.71310 -13.58952 -13.43995 -13.24587 -12.77816 -12.70029 -12.55562 -12.42066 -12.36334 -12.03451 -11.91601 -11.83946 -11.71227 -11.28775 -11.06465 -10.61446 -9.82165 -9.36924 -8.92864 -8.23733 -6.32488 0.38842 0.58439 1.34834 1.35835 1.49238 2.37803 2.49047 2.82817 3.10667 3.51063 3.60394 3.70069 3.97934 4.06483 4.11207 4.19471 4.24902 4.37175 4.40280 4.48686 4.60600 4.64749 4.77902 4.87778 4.93327 4.99512 5.05246 5.15400 5.21897 5.25692 5.35161 5.44958 5.52054 5.56138 5.65056 5.73904 5.99059 6.17106 6.26169 6.67530 6.72445 6.79582 7.34988 8.88220 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.019029 B = 0.005970 C = 0.005096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.075485 B = 4689.142158 C = 5492.948980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.094 3.906 3 H 0.062 0.938 4 C 0.029 3.971 5 C -0.529 4.529 6 H 0.046 0.954 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.957 3.043 10 H -0.271 1.271 11 H -0.276 1.276 12 H -0.271 1.271 13 O -0.320 6.320 14 C 0.123 3.877 15 C -0.226 4.226 16 C -0.081 4.081 17 C -0.147 4.147 18 C -0.058 4.058 19 C -0.161 4.161 20 C -0.075 4.075 21 C -0.107 4.107 22 C 0.137 3.863 23 H 0.071 0.929 24 N -0.846 5.846 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.081 0.919 28 H -0.002 1.002 29 H 0.026 0.974 30 H 0.265 0.735 31 H 0.133 0.867 32 H 0.154 0.846 33 H 0.147 0.853 34 H 0.051 0.949 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.100 0.900 38 H 0.351 0.649 39 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.179 5.309 19.907 20.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.038 3.962 3 H 0.080 0.920 4 C -0.007 4.007 5 C -0.567 4.567 6 H 0.064 0.936 7 C -0.192 4.192 8 N -0.570 5.570 9 Si 0.782 3.218 10 H -0.196 1.196 11 H -0.202 1.202 12 H -0.196 1.196 13 O -0.234 6.234 14 C 0.077 3.923 15 C -0.244 4.244 16 C -0.099 4.099 17 C -0.165 4.165 18 C -0.058 4.058 19 C -0.163 4.163 20 C -0.112 4.112 21 C -0.144 4.144 22 C 0.026 3.974 23 H 0.088 0.912 24 N -0.379 5.379 25 H 0.074 0.926 26 H 0.089 0.911 27 H 0.100 0.900 28 H 0.017 0.983 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.151 0.849 32 H 0.171 0.829 33 H 0.164 0.836 34 H 0.069 0.931 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.119 0.881 38 H 0.165 0.835 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -2.775 5.108 19.004 19.873 hybrid contribution 0.165 -0.264 -0.153 0.346 sum -2.610 4.845 18.851 19.638 Atomic orbital electron populations 1.22293 0.94105 1.02730 1.03137 1.22560 0.93978 0.95944 0.83725 0.92037 1.19107 0.95479 0.95076 0.91086 1.21433 0.93271 1.34344 1.07664 0.93603 1.25819 1.03362 0.94796 0.95234 1.70061 1.37403 1.36785 1.12730 0.85512 0.79905 0.78140 0.78224 1.19581 1.20181 1.19643 1.86185 1.81008 1.39181 1.17043 1.19193 0.95362 0.91402 0.86321 1.21423 1.07889 0.93919 1.01201 1.21149 0.97139 1.00218 0.91391 1.20710 1.01976 0.94162 0.99653 1.20589 0.96752 0.94214 0.94294 1.20095 1.04653 0.98950 0.92554 1.20878 0.98959 0.92956 0.98439 1.22398 0.99134 0.98172 0.94745 1.20760 0.92481 0.91467 0.92648 0.91161 1.58665 1.30601 1.12704 1.35918 0.92569 0.91121 0.89991 0.98343 0.95627 0.92613 0.84917 0.82862 0.83570 0.93069 0.90115 0.90915 0.88131 0.83517 0.82978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.78 9.17 71.98 0.66 -5.12 16 2 C 0.09 4.12 2.17 30.59 0.07 4.19 16 3 H 0.06 2.65 6.31 -2.38 -0.02 2.64 16 4 C 0.03 1.60 4.68 29.85 0.14 1.74 16 5 C -0.53 -31.53 8.88 25.60 0.23 -31.30 16 6 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 7 C 0.01 0.34 5.46 84.65 0.46 0.81 16 8 N -0.93 -57.25 13.29 21.45 0.28 -56.97 16 9 Si 0.96 46.28 29.54 68.60 2.03 48.30 16 10 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 13 O -0.32 -14.75 9.50 -92.43 -0.88 -15.62 16 14 C 0.12 4.84 6.60 22.54 0.15 4.99 16 15 C -0.23 -7.51 8.23 22.34 0.18 -7.32 16 16 C -0.08 -2.14 10.04 22.23 0.22 -1.92 16 17 C -0.15 -3.64 9.87 22.32 0.22 -3.42 16 18 C -0.06 -1.62 5.79 -19.60 -0.11 -1.73 16 19 C -0.16 -5.67 6.11 -19.50 -0.12 -5.79 16 20 C -0.07 -2.36 6.71 30.52 0.20 -2.15 16 21 C -0.11 -2.48 6.75 31.52 0.21 -2.26 16 22 C 0.14 2.91 3.99 44.85 0.18 3.09 16 23 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 24 N -0.85 -14.53 9.24 -168.96 -1.56 -16.09 16 25 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.07 2.14 6.90 -2.39 -0.02 2.13 16 27 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 28 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 29 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 31 H 0.13 4.22 5.42 -2.91 -0.02 4.21 16 32 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 33 H 0.15 2.58 7.94 -2.91 -0.02 2.55 16 34 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.07 1.84 8.09 -2.39 -0.02 1.82 16 37 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.35 4.76 8.81 -89.70 -0.79 3.97 16 39 H 0.36 4.43 9.04 -89.70 -0.81 3.62 16 Total: -1.00 -70.89 319.08 2.02 -68.86 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -0.54 Total: 17.72 kcal Atomic # 6 Polarization: -48.90 SS G_CDS: 2.70 Total: -46.20 kcal Atomic # 7 Polarization: -71.78 SS G_CDS: -1.28 Total: -73.06 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.88 Total: -15.62 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.30 kcal Total: -70.89 2.02 -68.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829189012.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.976 kcal (2) G-P(sol) polarization free energy of solvation -70.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds