Wall clock time and date at job start Mon Mar 30 2020 06:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47170 * 2 1 4 4 C 1.52996 * 109.47218 * 119.99729 * 2 1 3 5 5 C 1.50700 * 109.47418 * 185.00206 * 4 2 1 6 6 H 1.07997 * 119.99616 * 359.97438 * 5 4 2 7 7 C 1.37873 * 120.00230 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00028 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00187 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47221 * 89.99771 * 9 7 5 11 11 H 1.48505 * 109.47359 * 210.00124 * 9 7 5 12 12 H 1.48500 * 109.47016 * 329.99746 * 9 7 5 13 13 O 1.42900 * 109.46987 * 240.00168 * 2 1 3 14 14 C 1.35897 * 117.00397 * 84.76355 * 13 2 1 15 15 C 1.38642 * 119.95239 * 354.58900 * 14 13 2 16 16 C 1.38112 * 119.87317 * 180.27620 * 15 14 13 17 17 C 1.38173 * 120.00113 * 359.74834 * 16 15 14 18 18 C 1.38500 * 120.32601 * 0.02562 * 17 16 15 19 19 C 1.38170 * 119.88830 * 359.97438 * 18 17 16 20 20 C 1.51353 * 109.78333 * 180.02562 * 19 18 17 21 21 H 1.09002 * 110.30440 * 258.15792 * 20 19 18 22 22 N 1.46896 * 110.30672 * 136.09846 * 20 19 18 23 23 C 1.54354 * 105.16564 * 17.17708 * 20 19 18 24 24 C 1.51386 * 130.35973 * 179.97438 * 18 17 16 25 25 H 1.09000 * 109.47170 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47145 * 300.00066 * 1 2 3 27 27 H 1.09000 * 109.47022 * 59.99835 * 1 2 3 28 28 H 1.09003 * 109.47120 * 305.00186 * 4 2 1 29 29 H 1.09002 * 109.47232 * 64.99869 * 4 2 1 30 30 H 0.96999 * 120.00219 * 179.97438 * 8 7 5 31 31 H 1.07999 * 120.06212 * 0.02562 * 15 14 13 32 32 H 1.08007 * 120.00030 * 179.77425 * 16 15 14 33 33 H 1.07991 * 119.83705 * 179.97438 * 17 16 15 34 34 H 1.00897 * 111.00467 * 179.97438 * 22 20 19 35 35 H 1.00901 * 111.00041 * 303.96014 * 22 20 19 36 36 H 1.08995 * 110.82114 * 91.89450 * 23 20 19 37 37 H 1.08995 * 110.82446 * 215.24781 * 23 20 19 38 38 H 1.08995 * 110.30110 * 43.88926 * 24 18 17 39 39 H 1.09002 * 110.38414 * 281.77955 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.6148 1.3128 6 1 4.0790 -0.0861 0.5392 7 6 4.2304 -1.1934 2.3578 8 7 3.5765 -1.8376 3.2995 9 14 6.0921 -1.0621 2.4362 10 1 6.4709 0.1601 3.1898 11 1 6.6442 -2.2578 3.1224 12 1 6.6412 -0.9844 1.0587 13 8 2.0063 -0.6736 -1.1668 14 6 2.1078 0.0613 -2.3054 15 6 1.6513 1.3703 -2.3274 16 6 1.7500 2.1139 -3.4870 17 6 2.3077 1.5548 -4.6209 18 6 2.7693 0.2491 -4.6022 19 6 2.6728 -0.4988 -3.4445 20 6 3.2423 -1.8814 -3.6788 21 1 2.4377 -2.6024 -3.8233 22 7 4.0882 -2.2829 -2.5469 23 6 4.0897 -1.7567 -4.9629 24 6 3.4101 -0.5799 -5.6949 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6054 -0.2616 2.1370 29 1 1.7517 -1.7714 1.2057 30 1 4.0609 -2.2450 4.0346 31 1 1.2156 1.8062 -1.4405 32 1 1.3916 3.1325 -3.5075 33 1 2.3832 2.1385 -5.5263 34 1 4.4734 -3.2041 -2.6921 35 1 4.8190 -1.6065 -2.3839 36 1 5.1254 -1.5175 -4.7219 37 1 4.0325 -2.6700 -5.5551 38 1 4.1526 0.0107 -6.2314 39 1 2.6517 -0.9501 -6.3848 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829189216.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:20 Heat of formation + Delta-G solvation = -23.105036 kcal Electronic energy + Delta-G solvation = -19964.500603 eV Core-core repulsion = 17064.562544 eV Total energy + Delta-G solvation = -2899.938059 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.25296 -38.08445 -35.66046 -33.40839 -32.11508 -31.45307 -29.11884 -28.66850 -27.33505 -25.26524 -23.36748 -22.28592 -21.47498 -20.27865 -19.32497 -17.29927 -16.25559 -16.14444 -15.70778 -15.01784 -14.57332 -14.43995 -14.25604 -13.77979 -13.56739 -12.88985 -12.67917 -12.38912 -12.21503 -12.06044 -11.80105 -11.78361 -11.54383 -11.35882 -11.12675 -10.87397 -10.78958 -10.64750 -10.53684 -10.28620 -9.87020 -9.25726 -9.00530 -8.37094 -8.28554 -8.12478 -7.54143 -5.91374 -3.90354 1.58390 1.85697 3.37619 3.43607 3.48436 4.01220 4.12804 4.50991 4.54375 4.74982 4.94096 5.09288 5.26043 5.30956 5.38360 5.46250 5.52787 5.67704 5.70892 5.77489 5.83856 5.86926 5.90432 5.97479 6.12203 6.18953 6.28443 6.35948 6.62412 6.69372 6.76093 6.79932 6.90940 7.16553 7.57579 7.61732 7.72826 7.91669 8.05722 8.32921 8.49816 9.12145 9.71355 11.20615 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.018932 B = 0.006771 C = 0.005698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.627597 B = 4134.168311 C = 4912.924144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.083 3.917 3 H 0.059 0.941 4 C 0.028 3.972 5 C -0.499 4.499 6 H 0.055 0.945 7 C 0.056 3.944 8 N -0.900 5.900 9 Si 0.891 3.109 10 H -0.284 1.284 11 H -0.288 1.288 12 H -0.274 1.274 13 O -0.265 6.265 14 C 0.184 3.816 15 C -0.226 4.226 16 C -0.076 4.076 17 C -0.169 4.169 18 C -0.062 4.062 19 C -0.142 4.142 20 C 0.147 3.853 21 H 0.087 0.913 22 N -0.821 5.821 23 C -0.159 4.159 24 C -0.076 4.076 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.047 0.953 28 H 0.034 0.966 29 H 0.029 0.971 30 H 0.259 0.741 31 H 0.131 0.869 32 H 0.119 0.881 33 H 0.113 0.887 34 H 0.335 0.665 35 H 0.343 0.657 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.312 3.644 -16.321 16.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.027 3.973 3 H 0.077 0.923 4 C -0.008 4.008 5 C -0.537 4.537 6 H 0.073 0.927 7 C -0.144 4.144 8 N -0.540 5.540 9 Si 0.720 3.280 10 H -0.210 1.210 11 H -0.214 1.214 12 H -0.199 1.199 13 O -0.176 6.176 14 C 0.135 3.865 15 C -0.245 4.245 16 C -0.094 4.094 17 C -0.187 4.187 18 C -0.063 4.063 19 C -0.143 4.143 20 C 0.035 3.965 21 H 0.105 0.895 22 N -0.349 5.349 23 C -0.199 4.199 24 C -0.113 4.113 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.068 0.932 31 H 0.149 0.851 32 H 0.137 0.863 33 H 0.131 0.869 34 H 0.148 0.852 35 H 0.156 0.844 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.903 3.365 -15.635 16.254 hybrid contribution 1.666 0.342 -0.488 1.769 sum -1.237 3.706 -16.123 16.590 Atomic orbital electron populations 1.22421 0.97357 1.02485 1.01224 1.22859 0.91576 0.97015 0.85865 0.92347 1.19223 0.96620 0.96467 0.88537 1.21059 0.91573 1.33713 1.07353 0.92680 1.24936 0.98125 0.95464 0.95835 1.69951 1.35349 1.36466 1.12261 0.86601 0.86186 0.77222 0.78002 1.21023 1.21413 1.19895 1.86462 1.78755 1.36936 1.15399 1.18795 0.91013 0.89642 0.87047 1.21309 1.08368 0.94794 0.99989 1.20755 0.97443 0.98929 0.92304 1.20294 1.05096 0.94640 0.98678 1.20297 0.97640 0.93612 0.94757 1.19654 1.05274 0.96961 0.92390 1.20700 0.94946 0.93168 0.87653 0.89532 1.58514 1.28218 1.06419 1.41703 1.23250 0.99802 0.98287 0.98550 1.20943 0.99007 0.95386 0.95977 0.91994 0.91603 0.93444 0.94788 0.95272 0.93167 0.85115 0.86298 0.86921 0.85198 0.84373 0.91178 0.90856 0.91074 0.90328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.14 9.17 37.16 0.34 -2.80 16 2 C 0.08 1.77 2.17 -26.73 -0.06 1.71 16 3 H 0.06 1.23 6.32 -51.93 -0.33 0.90 16 4 C 0.03 0.74 4.68 -27.89 -0.13 0.61 16 5 C -0.50 -14.24 8.88 -34.44 -0.31 -14.54 16 6 H 0.05 1.58 7.74 -52.49 -0.41 1.17 16 7 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 8 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 9 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 13 O -0.26 -5.79 9.12 -19.42 -0.18 -5.97 16 14 C 0.18 3.50 6.59 -39.17 -0.26 3.24 16 15 C -0.23 -3.81 8.23 -39.48 -0.32 -4.13 16 16 C -0.08 -1.09 10.04 -39.65 -0.40 -1.49 16 17 C -0.17 -2.32 10.04 -39.51 -0.40 -2.72 16 18 C -0.06 -0.90 6.14 -104.21 -0.64 -1.54 16 19 C -0.14 -2.41 5.72 -104.07 -0.59 -3.00 16 20 C 0.15 2.21 3.95 -67.84 -0.27 1.94 16 21 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 22 N -0.82 -13.67 8.89 -4.77 -0.04 -13.72 16 23 C -0.16 -1.82 6.76 -25.31 -0.17 -1.99 16 24 C -0.08 -0.85 6.77 -26.83 -0.18 -1.03 16 25 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.05 0.75 6.89 -51.93 -0.36 0.39 16 28 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.13 2.12 5.41 -52.49 -0.28 1.83 16 32 H 0.12 1.37 8.06 -52.48 -0.42 0.94 16 33 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 34 H 0.34 4.72 9.08 -39.29 -0.36 4.37 16 35 H 0.34 5.86 8.93 -39.29 -0.35 5.51 16 36 H 0.07 0.80 8.04 -51.93 -0.42 0.38 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 318.70 15.07 4.80 4.80 Total: -1.00 -31.53 318.70 -9.05 -40.58 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -5.86 Total: 7.88 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: -3.48 Total: -24.22 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: 0.69 Total: -40.24 kcal Atomic # 8 Polarization: -5.79 SS G_CDS: -0.18 Total: -5.97 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.53 -9.05 -40.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829189216.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.473 kcal (2) G-P(sol) polarization free energy of solvation -31.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds