Wall clock time and date at job start Mon Mar 30 2020 06:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47051 * 2 1 4 4 C 1.52997 * 109.47173 * 120.00167 * 2 1 3 5 5 C 1.50702 * 109.46990 * 184.99570 * 4 2 1 6 6 H 1.07993 * 119.99996 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99975 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00227 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99715 * 0.02562 * 7 5 4 10 10 H 1.48505 * 109.47115 * 89.99933 * 9 7 5 11 11 H 1.48497 * 109.46971 * 209.99560 * 9 7 5 12 12 H 1.48488 * 109.47483 * 329.99985 * 9 7 5 13 13 O 1.42900 * 109.46859 * 240.00433 * 2 1 3 14 14 C 1.35901 * 117.00272 * 84.92601 * 13 2 1 15 15 C 1.38642 * 119.94886 * 354.52682 * 14 13 2 16 16 C 1.38122 * 119.87242 * 179.71754 * 15 14 13 17 17 C 1.38171 * 119.99483 * 0.54790 * 16 15 14 18 18 C 1.38502 * 120.33263 * 359.73755 * 17 16 15 19 19 C 1.38164 * 119.88407 * 359.97438 * 18 17 16 20 20 C 1.51361 * 109.78076 * 180.02562 * 19 18 17 21 21 H 1.08996 * 110.30272 * 101.74763 * 20 19 18 22 22 N 1.46899 * 110.30724 * 223.90853 * 20 19 18 23 23 C 1.54353 * 105.16227 * 342.82552 * 20 19 18 24 24 C 1.51379 * 130.35947 * 180.02562 * 18 17 16 25 25 H 1.08998 * 109.47051 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46856 * 299.99931 * 1 2 3 27 27 H 1.09002 * 109.47181 * 59.99657 * 1 2 3 28 28 H 1.08997 * 109.47559 * 304.99988 * 4 2 1 29 29 H 1.09006 * 109.47118 * 64.99960 * 4 2 1 30 30 H 0.96994 * 120.00312 * 180.02562 * 8 7 5 31 31 H 1.08005 * 120.06629 * 359.97438 * 15 14 13 32 32 H 1.07998 * 120.00235 * 180.23994 * 16 15 14 33 33 H 1.07998 * 119.83359 * 179.71267 * 17 16 15 34 34 H 1.00893 * 110.99938 * 180.02562 * 22 20 19 35 35 H 1.00910 * 110.99464 * 303.94954 * 22 20 19 36 36 H 1.08999 * 110.82577 * 268.10813 * 23 20 19 37 37 H 1.09002 * 110.98800 * 144.63473 * 23 20 19 38 38 H 1.08992 * 110.30793 * 316.09168 * 24 18 17 39 39 H 1.09007 * 110.30396 * 78.15046 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5420 -0.6150 1.3126 6 1 4.0789 -0.0856 0.5395 7 6 4.2305 -1.1928 2.3582 8 7 5.5411 -1.0996 2.4138 9 14 3.3015 -2.1079 3.6958 10 1 3.1708 -3.5381 3.3179 11 1 4.0448 -2.0003 4.9768 12 1 1.9505 -1.5128 3.8559 13 8 2.0063 -0.6736 -1.1668 14 6 2.1110 0.0623 -2.3046 15 6 1.6563 1.3719 -2.3261 16 6 1.7688 2.1203 -3.4816 17 6 2.3233 1.5598 -4.6163 18 6 2.7734 0.2501 -4.6012 19 6 2.6685 -0.5006 -3.4460 20 6 3.2262 -1.8875 -3.6839 21 1 4.2268 -1.9706 -3.2597 22 7 2.3379 -2.9013 -3.1000 23 6 3.2804 -2.0430 -5.2186 24 6 3.4095 -0.5806 -5.6952 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.6055 -0.2618 2.1370 29 1 1.7517 -1.7716 1.2055 30 1 6.0255 -1.5064 3.1491 31 1 1.2188 1.8074 -1.4399 32 1 1.4189 3.1418 -3.4996 33 1 2.4058 2.1458 -5.5197 34 1 2.7003 -3.8305 -3.2523 35 1 2.1887 -2.7283 -2.1171 36 1 2.3622 -2.4937 -5.5951 37 1 4.1494 -2.6273 -5.5213 38 1 2.8759 -0.4405 -6.6352 39 1 4.4591 -0.3111 -5.8130 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829189217.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:22 Heat of formation + Delta-G solvation = -24.618679 kcal Electronic energy + Delta-G solvation = -19924.109931 eV Core-core repulsion = 17024.106236 eV Total energy + Delta-G solvation = -2900.003696 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.29786 -38.17461 -35.62853 -33.58031 -32.23397 -31.67702 -29.19261 -28.78895 -27.93816 -25.29912 -23.37144 -22.18472 -21.51475 -20.14856 -19.41490 -17.26961 -16.76773 -15.98396 -15.75477 -15.40409 -14.64354 -14.53582 -14.29851 -13.77483 -13.52188 -13.39122 -12.78447 -12.67237 -12.38099 -12.14538 -11.94882 -11.76062 -11.63161 -11.38602 -11.23439 -10.97212 -10.82525 -10.63850 -10.57552 -10.12297 -9.85528 -9.58639 -9.25895 -8.62318 -8.57863 -8.17248 -7.61774 -6.06959 -4.05177 1.60174 1.82778 3.27466 3.35049 3.36425 3.85848 4.04511 4.40878 4.60538 4.76931 4.91111 5.15277 5.26241 5.27263 5.39742 5.40383 5.47105 5.57204 5.64444 5.75257 5.80155 5.84651 5.91290 5.95652 6.07595 6.21042 6.24664 6.33598 6.40587 6.53182 6.70946 6.73437 6.83593 6.99266 7.09195 7.23161 7.49450 7.69293 7.83032 8.12653 8.48875 8.98110 9.53610 11.06486 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.021854 B = 0.006108 C = 0.005527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.922914 B = 4582.795553 C = 5064.914938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.096 3.904 3 H 0.067 0.933 4 C -0.010 4.010 5 C -0.515 4.515 6 H 0.072 0.928 7 C 0.067 3.933 8 N -0.901 5.901 9 Si 0.878 3.122 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.266 1.266 13 O -0.291 6.291 14 C 0.172 3.828 15 C -0.218 4.218 16 C -0.080 4.080 17 C -0.161 4.161 18 C -0.059 4.059 19 C -0.128 4.128 20 C 0.140 3.860 21 H 0.050 0.950 22 N -0.842 5.842 23 C -0.114 4.114 24 C -0.078 4.078 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.052 0.948 28 H 0.036 0.964 29 H 0.024 0.976 30 H 0.263 0.737 31 H 0.131 0.869 32 H 0.120 0.880 33 H 0.115 0.885 34 H 0.334 0.666 35 H 0.358 0.642 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.458 1.741 -13.308 15.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.040 3.960 3 H 0.085 0.915 4 C -0.047 4.047 5 C -0.553 4.553 6 H 0.090 0.910 7 C -0.134 4.134 8 N -0.540 5.540 9 Si 0.705 3.295 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.191 1.191 13 O -0.203 6.203 14 C 0.125 3.875 15 C -0.237 4.237 16 C -0.098 4.098 17 C -0.180 4.180 18 C -0.060 4.060 19 C -0.129 4.129 20 C 0.028 3.972 21 H 0.068 0.932 22 N -0.374 5.374 23 C -0.152 4.152 24 C -0.115 4.115 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.042 0.958 30 H 0.073 0.927 31 H 0.149 0.851 32 H 0.138 0.862 33 H 0.133 0.867 34 H 0.145 0.855 35 H 0.174 0.826 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.804 1.751 -13.636 15.808 hybrid contribution 0.421 -0.406 1.573 1.678 sum -7.383 1.345 -12.063 14.207 Atomic orbital electron populations 1.22438 0.96889 1.02689 1.01683 1.22556 0.91663 0.97170 0.84620 0.91510 1.19731 0.98060 0.96183 0.90770 1.21004 0.89373 1.35372 1.09511 0.90990 1.24999 0.94728 0.95852 0.97799 1.69909 1.06525 1.45312 1.32283 0.86810 0.80354 0.80670 0.81617 1.20235 1.21353 1.19068 1.86153 1.79971 1.38028 1.16143 1.18696 0.92511 0.89970 0.86371 1.21234 1.07987 0.94398 1.00053 1.20747 0.97798 0.98948 0.92291 1.20340 1.04427 0.94514 0.98694 1.20264 0.97212 0.93757 0.94753 1.19654 1.04219 0.96781 0.92287 1.20622 0.93998 0.88358 0.94189 0.93221 1.58933 1.50816 1.04562 1.23073 1.22398 1.02428 0.95939 0.94450 1.21003 1.00380 0.93595 0.96543 0.91871 0.91508 0.92852 0.94582 0.95808 0.92727 0.85137 0.86163 0.86704 0.85468 0.82616 0.90043 0.91085 0.90757 0.90248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.89 9.17 37.16 0.34 -2.55 16 2 C 0.10 1.91 2.17 -26.73 -0.06 1.85 16 3 H 0.07 1.34 6.31 -51.93 -0.33 1.01 16 4 C -0.01 -0.24 3.75 -27.88 -0.10 -0.35 16 5 C -0.51 -14.55 9.43 -34.44 -0.32 -14.88 16 6 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 7 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 8 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 9 Si 0.88 21.41 27.47 -169.99 -4.67 16.75 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 13 O -0.29 -6.01 7.77 -19.43 -0.15 -6.16 16 14 C 0.17 3.26 6.59 -39.17 -0.26 3.00 16 15 C -0.22 -3.66 8.23 -39.47 -0.32 -3.99 16 16 C -0.08 -1.15 10.04 -39.65 -0.40 -1.55 16 17 C -0.16 -2.28 10.04 -39.51 -0.40 -2.68 16 18 C -0.06 -0.90 6.14 -104.22 -0.64 -1.54 16 19 C -0.13 -2.26 5.77 -104.06 -0.60 -2.86 16 20 C 0.14 2.23 3.97 -67.83 -0.27 1.96 16 21 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 22 N -0.84 -13.30 9.26 -4.77 -0.04 -13.35 16 23 C -0.11 -1.41 6.77 -25.32 -0.17 -1.58 16 24 C -0.08 -0.93 6.77 -26.84 -0.18 -1.11 16 25 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.05 0.79 6.90 -51.93 -0.36 0.43 16 28 H 0.04 0.82 7.20 -51.93 -0.37 0.45 16 29 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 30 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 31 H 0.13 2.06 5.41 -52.48 -0.28 1.78 16 32 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 33 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.33 4.45 9.08 -39.30 -0.36 4.09 16 35 H 0.36 6.42 7.19 -39.29 -0.28 6.14 16 36 H 0.08 1.00 8.09 -51.93 -0.42 0.58 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.08 0.87 8.14 -51.92 -0.42 0.44 16 LS Contribution 312.54 15.07 4.71 4.71 Total: -1.00 -31.24 312.54 -8.63 -39.87 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -5.76 Total: 9.58 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: -3.48 Total: -24.42 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: 0.73 Total: -40.32 kcal Atomic # 8 Polarization: -6.01 SS G_CDS: -0.15 Total: -6.16 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.24 -8.63 -39.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829189217.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.250 kcal (2) G-P(sol) polarization free energy of solvation -31.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds