Wall clock time and date at job start Mon Mar 30 2020 06:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47051 * 2 1 4 4 C 1.52997 * 109.47173 * 120.00167 * 2 1 3 5 5 C 1.50702 * 109.46990 * 184.99570 * 4 2 1 6 6 H 1.07993 * 119.99996 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99975 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00227 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99715 * 0.02562 * 7 5 4 10 10 H 1.48505 * 109.47115 * 89.99933 * 9 7 5 11 11 H 1.48497 * 109.46971 * 209.99560 * 9 7 5 12 12 H 1.48488 * 109.47483 * 329.99985 * 9 7 5 13 13 O 1.42900 * 109.46859 * 240.00433 * 2 1 3 14 14 C 1.35901 * 117.00272 * 84.92601 * 13 2 1 15 15 C 1.38642 * 119.94886 * 354.52682 * 14 13 2 16 16 C 1.38122 * 119.87242 * 179.71754 * 15 14 13 17 17 C 1.38171 * 119.99483 * 0.54790 * 16 15 14 18 18 C 1.38502 * 120.33263 * 359.73755 * 17 16 15 19 19 C 1.38164 * 119.88407 * 359.97438 * 18 17 16 20 20 C 1.51361 * 109.78076 * 180.02562 * 19 18 17 21 21 H 1.08996 * 110.30272 * 101.74763 * 20 19 18 22 22 N 1.46899 * 110.30724 * 223.90853 * 20 19 18 23 23 C 1.54353 * 105.16227 * 342.82552 * 20 19 18 24 24 C 1.51379 * 130.35947 * 180.02562 * 18 17 16 25 25 H 1.08998 * 109.47051 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46856 * 299.99931 * 1 2 3 27 27 H 1.09002 * 109.47181 * 59.99657 * 1 2 3 28 28 H 1.08997 * 109.47559 * 304.99988 * 4 2 1 29 29 H 1.09006 * 109.47118 * 64.99960 * 4 2 1 30 30 H 0.96994 * 120.00312 * 180.02562 * 8 7 5 31 31 H 1.08005 * 120.06629 * 359.97438 * 15 14 13 32 32 H 1.07998 * 120.00235 * 180.23994 * 16 15 14 33 33 H 1.07998 * 119.83359 * 179.71267 * 17 16 15 34 34 H 1.00893 * 110.99938 * 180.02562 * 22 20 19 35 35 H 1.00910 * 110.99464 * 303.94954 * 22 20 19 36 36 H 1.08999 * 110.82577 * 268.10813 * 23 20 19 37 37 H 1.09002 * 110.98800 * 144.63473 * 23 20 19 38 38 H 1.08992 * 110.30793 * 316.09168 * 24 18 17 39 39 H 1.09007 * 110.30396 * 78.15046 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5420 -0.6150 1.3126 6 1 4.0789 -0.0856 0.5395 7 6 4.2305 -1.1928 2.3582 8 7 5.5411 -1.0996 2.4138 9 14 3.3015 -2.1079 3.6958 10 1 3.1708 -3.5381 3.3179 11 1 4.0448 -2.0003 4.9768 12 1 1.9505 -1.5128 3.8559 13 8 2.0063 -0.6736 -1.1668 14 6 2.1110 0.0623 -2.3046 15 6 1.6563 1.3719 -2.3261 16 6 1.7688 2.1203 -3.4816 17 6 2.3233 1.5598 -4.6163 18 6 2.7734 0.2501 -4.6012 19 6 2.6685 -0.5006 -3.4460 20 6 3.2262 -1.8875 -3.6839 21 1 4.2268 -1.9706 -3.2597 22 7 2.3379 -2.9013 -3.1000 23 6 3.2804 -2.0430 -5.2186 24 6 3.4095 -0.5806 -5.6952 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.6055 -0.2618 2.1370 29 1 1.7517 -1.7716 1.2055 30 1 6.0255 -1.5064 3.1491 31 1 1.2188 1.8074 -1.4399 32 1 1.4189 3.1418 -3.4996 33 1 2.4058 2.1458 -5.5197 34 1 2.7003 -3.8305 -3.2523 35 1 2.1887 -2.7283 -2.1171 36 1 2.3622 -2.4937 -5.5951 37 1 4.1494 -2.6273 -5.5213 38 1 2.8759 -0.4405 -6.6352 39 1 4.4591 -0.3111 -5.8130 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829189217.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:21 Heat of formation + Delta-G solvation = -44.930451 kcal Electronic energy + Delta-G solvation = -19924.990716 eV Core-core repulsion = 17024.106236 eV Total energy + Delta-G solvation = -2900.884480 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.54963 -39.52740 -36.82242 -35.45441 -33.81329 -33.17225 -30.46410 -30.14269 -29.51958 -26.45585 -25.08394 -23.59760 -22.83739 -21.35960 -20.86348 -18.99065 -18.56430 -17.19379 -17.10624 -16.61922 -16.35996 -15.87125 -15.74867 -15.09678 -15.00622 -14.52098 -14.43292 -14.12333 -13.83553 -13.70741 -13.52314 -13.14007 -12.90315 -12.61030 -12.46615 -12.42957 -12.12686 -11.91846 -11.84431 -11.80205 -11.63545 -11.30885 -11.21391 -10.79434 -9.87325 -9.38975 -8.92619 -8.30659 -6.34840 0.39650 0.59123 1.34687 1.36176 1.47644 2.33680 2.45871 2.82889 3.05789 3.51966 3.63902 3.74284 3.97897 4.09118 4.11265 4.17954 4.27721 4.33002 4.41502 4.46765 4.63547 4.72909 4.78165 4.86113 4.93446 4.97917 5.04941 5.07797 5.15030 5.22585 5.28572 5.32868 5.51249 5.55148 5.59491 5.65577 6.00100 6.20651 6.22742 6.55030 6.67989 6.75837 7.27780 8.86696 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.021854 B = 0.006108 C = 0.005527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.922914 B = 4582.795553 C = 5064.914938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.096 3.904 3 H 0.056 0.944 4 C -0.008 4.008 5 C -0.520 4.520 6 H 0.020 0.980 7 C 0.003 3.997 8 N -0.953 5.953 9 Si 0.953 3.047 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.239 1.239 13 O -0.315 6.315 14 C 0.134 3.866 15 C -0.233 4.233 16 C -0.079 4.079 17 C -0.158 4.158 18 C -0.064 4.064 19 C -0.162 4.162 20 C 0.131 3.869 21 H 0.022 0.978 22 N -0.841 5.841 23 C -0.104 4.104 24 C -0.074 4.074 25 H 0.064 0.936 26 H 0.086 0.914 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.026 0.974 30 H 0.266 0.734 31 H 0.134 0.866 32 H 0.153 0.847 33 H 0.151 0.849 34 H 0.345 0.655 35 H 0.343 0.657 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.426 2.045 -14.532 17.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.040 3.960 3 H 0.074 0.926 4 C -0.045 4.045 5 C -0.558 4.558 6 H 0.039 0.961 7 C -0.193 4.193 8 N -0.594 5.594 9 Si 0.776 3.224 10 H -0.195 1.195 11 H -0.210 1.210 12 H -0.162 1.162 13 O -0.228 6.228 14 C 0.088 3.912 15 C -0.252 4.252 16 C -0.097 4.097 17 C -0.176 4.176 18 C -0.065 4.065 19 C -0.163 4.163 20 C 0.020 3.980 21 H 0.040 0.960 22 N -0.371 5.371 23 C -0.141 4.141 24 C -0.111 4.111 25 H 0.083 0.917 26 H 0.105 0.895 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.151 0.849 32 H 0.171 0.829 33 H 0.168 0.832 34 H 0.157 0.843 35 H 0.157 0.843 36 H 0.103 0.897 37 H 0.110 0.890 38 H 0.121 0.879 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.789 2.062 -14.894 17.942 hybrid contribution 1.126 -0.422 1.832 2.191 sum -8.663 1.639 -13.062 15.760 Atomic orbital electron populations 1.22319 0.93491 1.03300 1.03280 1.22431 0.94165 0.95836 0.83554 0.92600 1.19681 0.94563 0.96921 0.93361 1.21246 0.92130 1.34418 1.08038 0.96120 1.26029 0.95609 0.96927 1.00771 1.70082 1.08706 1.47025 1.33605 0.85625 0.79923 0.79220 0.77668 1.19499 1.20999 1.16178 1.86083 1.81005 1.38913 1.16838 1.19118 0.94661 0.91183 0.86225 1.21427 1.08449 0.93961 1.01319 1.21181 0.96883 1.00177 0.91472 1.20808 1.02718 0.94304 0.99782 1.20789 0.96570 0.94338 0.94810 1.20088 1.05094 0.98069 0.93020 1.20773 0.92389 0.88116 0.96717 0.95980 1.58979 1.50916 1.05373 1.21865 1.22377 1.03557 0.96972 0.91232 1.21098 1.01233 0.92251 0.96496 0.91699 0.89489 0.91618 0.93101 0.95556 0.92566 0.84861 0.82888 0.83155 0.84255 0.84346 0.89671 0.89012 0.87907 0.88945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.15 9.17 71.98 0.66 -4.49 16 2 C 0.10 3.89 2.17 30.59 0.07 3.96 16 3 H 0.06 2.33 6.31 -2.39 -0.02 2.31 16 4 C -0.01 -0.38 3.75 29.85 0.11 -0.27 16 5 C -0.52 -30.69 9.43 25.60 0.24 -30.45 16 6 H 0.02 1.38 7.99 -2.91 -0.02 1.36 16 7 C 0.00 0.17 5.47 84.66 0.46 0.64 16 8 N -0.95 -61.04 13.96 21.45 0.30 -60.74 16 9 Si 0.95 44.29 27.47 68.60 1.88 46.18 16 10 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.24 -9.97 6.54 99.48 0.65 -9.32 16 13 O -0.31 -13.63 7.77 -92.44 -0.72 -14.35 16 14 C 0.13 5.27 6.59 22.54 0.15 5.42 16 15 C -0.23 -7.83 8.23 22.34 0.18 -7.65 16 16 C -0.08 -2.15 10.04 22.23 0.22 -1.92 16 17 C -0.16 -4.05 10.04 22.32 0.22 -3.82 16 18 C -0.06 -1.86 6.14 -19.60 -0.12 -1.98 16 19 C -0.16 -5.80 5.77 -19.50 -0.11 -5.91 16 20 C 0.13 4.30 3.97 44.84 0.18 4.48 16 21 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 22 N -0.84 -27.37 9.26 -169.00 -1.57 -28.94 16 23 C -0.10 -2.40 6.77 31.51 0.21 -2.19 16 24 C -0.07 -1.57 6.77 30.52 0.21 -1.36 16 25 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.06 1.86 6.90 -2.39 -0.02 1.84 16 28 H 0.05 2.23 7.20 -2.39 -0.02 2.22 16 29 H 0.03 1.22 7.57 -2.38 -0.02 1.20 16 30 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 31 H 0.13 4.23 5.41 -2.91 -0.02 4.21 16 32 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 33 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16 34 H 0.34 9.41 9.08 -89.70 -0.81 8.59 16 35 H 0.34 12.99 7.19 -89.69 -0.64 12.34 16 36 H 0.08 1.92 8.09 -2.39 -0.02 1.90 16 37 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.10 1.64 8.14 -2.39 -0.02 1.63 16 39 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 Total: -1.00 -71.73 312.54 2.13 -69.59 By element: Atomic # 1 Polarization: 34.26 SS G_CDS: -0.45 Total: 33.81 kcal Atomic # 6 Polarization: -48.23 SS G_CDS: 2.69 Total: -45.55 kcal Atomic # 7 Polarization: -88.42 SS G_CDS: -1.27 Total: -89.68 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.72 Total: -14.35 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.88 Total: 46.18 kcal Total: -71.73 2.13 -69.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829189217.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.662 kcal (2) G-P(sol) polarization free energy of solvation -71.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds