Wall clock time and date at job start Mon Mar 30 2020 06:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08991 * 109.47634 * 2 1 4 4 C 1.53008 * 109.46800 * 239.99776 * 2 1 3 5 5 C 1.50698 * 109.47107 * 175.00049 * 4 2 1 6 6 H 1.07998 * 120.00083 * 0.27704 * 5 4 2 7 7 C 1.37872 * 119.99845 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00306 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99804 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47430 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47490 * 119.99761 * 9 7 5 12 12 H 1.48505 * 109.47304 * 239.99638 * 9 7 5 13 13 O 1.42898 * 109.47203 * 120.00383 * 2 1 3 14 14 C 1.35905 * 117.00004 * 275.23564 * 13 2 1 15 15 C 1.38641 * 119.94728 * 5.40365 * 14 13 2 16 16 C 1.38118 * 119.87015 * 179.97438 * 15 14 13 17 17 C 1.38175 * 119.99698 * 0.02562 * 16 15 14 18 18 C 1.38499 * 120.33205 * 0.02562 * 17 16 15 19 19 C 1.38165 * 119.88267 * 359.69787 * 18 17 16 20 20 C 1.51360 * 109.77888 * 179.84070 * 19 18 17 21 21 H 1.09001 * 110.17043 * 102.09726 * 20 19 18 22 22 N 1.46900 * 110.45848 * 224.16598 * 20 19 18 23 23 C 1.54346 * 105.22916 * 343.20683 * 20 19 18 24 24 C 1.51378 * 130.36214 * 179.97438 * 18 17 16 25 25 H 1.08995 * 109.47278 * 59.99328 * 1 2 3 26 26 H 1.08999 * 109.47399 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46705 * 299.99709 * 1 2 3 28 28 H 1.09001 * 109.47049 * 55.00231 * 4 2 1 29 29 H 1.08997 * 109.47257 * 295.00513 * 4 2 1 30 30 H 0.97001 * 119.99734 * 179.97438 * 8 7 5 31 31 H 1.08001 * 120.06894 * 359.96383 * 15 14 13 32 32 H 1.08005 * 120.00324 * 179.97438 * 16 15 14 33 33 H 1.08003 * 119.83054 * 179.97438 * 17 16 15 34 34 H 1.00895 * 110.99879 * 177.36399 * 22 20 19 35 35 H 1.00895 * 110.99905 * 301.32424 * 22 20 19 36 36 H 1.09001 * 110.82475 * 267.89323 * 23 20 19 37 37 H 1.09000 * 110.98991 * 144.41494 * 23 20 19 38 38 H 1.08999 * 110.30663 * 316.08789 * 24 18 17 39 39 H 1.09010 * 110.30264 * 78.13860 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0399 -0.7214 -1.2493 5 6 3.5418 -0.6151 -1.3128 6 1 4.0793 -0.0898 -0.5372 7 6 4.2301 -1.1928 -2.3584 8 7 3.5761 -1.8371 -3.3001 9 14 6.0919 -1.0617 -2.4368 10 1 6.5837 -0.2922 -1.2659 11 1 6.6852 -2.4229 -2.4198 12 1 6.4869 -0.3652 -3.6875 13 8 2.0063 -0.6737 1.1667 14 6 2.1078 0.0613 2.3054 15 6 1.6514 1.3702 2.3272 16 6 1.7548 2.1155 3.4854 17 6 2.3129 1.5565 4.6192 18 6 2.7711 0.2496 4.6016 19 6 2.6646 -0.5018 3.4470 20 6 3.2353 -1.8840 3.6810 21 1 2.4298 -2.6031 3.8296 22 7 4.0775 -2.2903 2.5480 23 6 4.0857 -1.7598 4.9630 24 6 3.4124 -0.5791 5.6941 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.6053 -0.2618 -2.1370 29 1 1.7515 -1.7716 -1.2057 30 1 4.0604 -2.2433 -4.0359 31 1 1.2159 1.8063 1.4403 32 1 1.4003 3.1355 3.5048 33 1 2.3928 2.1418 5.5233 34 1 4.4968 -3.1928 2.7145 35 1 3.5508 -2.2894 1.6874 36 1 5.1218 -1.5243 4.7195 37 1 4.0270 -2.6698 5.5602 38 1 4.1581 0.0102 6.2277 39 1 2.6538 -0.9444 6.3864 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829189218.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:24 Heat of formation + Delta-G solvation = -27.399592 kcal Electronic energy + Delta-G solvation = -19981.829022 eV Core-core repulsion = 17081.704737 eV Total energy + Delta-G solvation = -2900.124285 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.27535 -38.11412 -35.60802 -33.51221 -32.18708 -31.49970 -29.15620 -28.71623 -27.41348 -25.27162 -23.44290 -22.29063 -21.56753 -20.13164 -19.39860 -17.24105 -16.32419 -15.89014 -15.68857 -15.34671 -14.64703 -14.50198 -14.28268 -13.74857 -13.54171 -13.38410 -12.67200 -12.61331 -12.18798 -11.87984 -11.86320 -11.54042 -11.45471 -11.28242 -11.18838 -10.85618 -10.80080 -10.69739 -10.56475 -10.30652 -9.95383 -9.34664 -9.06375 -8.52147 -8.36166 -8.10628 -7.59604 -5.98894 -3.99541 1.59694 1.82867 3.35433 3.43161 3.51564 3.89989 4.08120 4.50837 4.60397 4.77795 4.96592 5.14858 5.26652 5.38664 5.38908 5.41916 5.51056 5.64135 5.70459 5.77122 5.80802 5.88575 5.94250 5.95385 6.12066 6.23770 6.28218 6.34058 6.55210 6.64705 6.73915 6.79299 6.85887 7.13471 7.51139 7.59274 7.65590 7.98879 8.00290 8.19894 8.39584 9.05638 9.64572 11.12443 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.018964 B = 0.006765 C = 0.005706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.153054 B = 4138.212068 C = 4905.919829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.087 3.913 3 H 0.062 0.938 4 C 0.026 3.974 5 C -0.508 4.508 6 H 0.059 0.941 7 C 0.058 3.942 8 N -0.899 5.899 9 Si 0.891 3.109 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.286 1.286 13 O -0.291 6.291 14 C 0.172 3.828 15 C -0.219 4.219 16 C -0.079 4.079 17 C -0.163 4.163 18 C -0.059 4.059 19 C -0.131 4.131 20 C 0.142 3.858 21 H 0.040 0.960 22 N -0.840 5.840 23 C -0.116 4.116 24 C -0.077 4.077 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.048 0.952 28 H 0.037 0.963 29 H 0.027 0.973 30 H 0.259 0.741 31 H 0.131 0.869 32 H 0.120 0.880 33 H 0.114 0.886 34 H 0.333 0.667 35 H 0.365 0.635 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.813 2.961 15.550 16.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.031 3.969 3 H 0.080 0.920 4 C -0.011 4.011 5 C -0.546 4.546 6 H 0.077 0.923 7 C -0.143 4.143 8 N -0.539 5.539 9 Si 0.719 3.281 10 H -0.195 1.195 11 H -0.211 1.211 12 H -0.213 1.213 13 O -0.203 6.203 14 C 0.125 3.875 15 C -0.238 4.238 16 C -0.098 4.098 17 C -0.182 4.182 18 C -0.060 4.060 19 C -0.132 4.132 20 C 0.031 3.969 21 H 0.058 0.942 22 N -0.373 5.373 23 C -0.154 4.154 24 C -0.115 4.115 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.055 0.945 29 H 0.045 0.955 30 H 0.069 0.931 31 H 0.149 0.851 32 H 0.138 0.862 33 H 0.132 0.868 34 H 0.145 0.855 35 H 0.182 0.818 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.322 3.292 15.485 16.176 hybrid contribution 0.202 -0.461 -0.423 0.658 sum -3.120 2.831 15.062 15.640 Atomic orbital electron populations 1.22421 0.97211 1.02472 1.01415 1.22857 0.91603 0.97233 0.85183 0.91988 1.19267 0.96756 0.96310 0.88718 1.21168 0.91474 1.34265 1.07703 0.92272 1.24956 0.98367 0.95264 0.95687 1.69966 1.35434 1.36283 1.12182 0.86533 0.85908 0.77818 0.77816 1.19506 1.21080 1.21280 1.86180 1.79775 1.38233 1.16141 1.18742 0.92230 0.90038 0.86506 1.21254 1.07957 0.94571 0.99994 1.20751 0.97747 0.98961 0.92312 1.20333 1.04553 0.94585 0.98696 1.20260 0.97425 0.93515 0.94793 1.19671 1.03992 0.97203 0.92378 1.20572 0.92809 0.92061 0.91471 0.94200 1.58781 1.38444 1.34612 1.05431 1.22410 1.00410 0.97614 0.94953 1.20991 0.99015 0.95527 0.95922 0.91438 0.92060 0.93330 0.94519 0.95463 0.93116 0.85105 0.86213 0.86770 0.85550 0.81791 0.89847 0.91183 0.90750 0.90445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.02 9.17 37.16 0.34 -2.68 16 2 C 0.09 1.79 2.17 -26.73 -0.06 1.73 16 3 H 0.06 1.27 6.31 -51.93 -0.33 0.95 16 4 C 0.03 0.66 4.68 -27.88 -0.13 0.53 16 5 C -0.51 -14.21 8.88 -34.44 -0.31 -14.52 16 6 H 0.06 1.69 7.74 -52.49 -0.41 1.28 16 7 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 8 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 9 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 10 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 13 O -0.29 -6.09 7.84 -19.44 -0.15 -6.24 16 14 C 0.17 3.27 6.59 -39.17 -0.26 3.01 16 15 C -0.22 -3.69 8.23 -39.48 -0.32 -4.01 16 16 C -0.08 -1.15 10.04 -39.65 -0.40 -1.55 16 17 C -0.16 -2.29 10.04 -39.51 -0.40 -2.68 16 18 C -0.06 -0.89 6.13 -104.22 -0.64 -1.53 16 19 C -0.13 -2.29 5.79 -104.06 -0.60 -2.89 16 20 C 0.14 2.23 3.95 -67.84 -0.27 1.96 16 21 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 22 N -0.84 -14.62 9.26 -4.77 -0.04 -14.66 16 23 C -0.12 -1.45 6.76 -25.33 -0.17 -1.62 16 24 C -0.08 -0.91 6.77 -26.85 -0.18 -1.09 16 25 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 26 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 27 H 0.05 0.74 6.89 -51.92 -0.36 0.38 16 28 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.13 2.10 5.41 -52.49 -0.28 1.81 16 32 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 33 H 0.11 1.29 8.06 -52.48 -0.42 0.86 16 34 H 0.33 4.88 9.06 -39.29 -0.36 4.52 16 35 H 0.37 7.31 7.30 -39.29 -0.29 7.02 16 36 H 0.08 1.11 8.09 -51.93 -0.42 0.69 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 LS Contribution 316.26 15.07 4.77 4.77 Total: -1.00 -30.60 316.26 -9.01 -39.61 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -5.80 Total: 9.12 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: -3.49 Total: -23.78 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: 0.69 Total: -40.60 kcal Atomic # 8 Polarization: -6.09 SS G_CDS: -0.15 Total: -6.24 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.60 -9.01 -39.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829189218.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.208 kcal (2) G-P(sol) polarization free energy of solvation -30.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds