Wall clock time and date at job start Mon Mar 30 2020 06:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08991 * 109.47634 * 2 1 4 4 C 1.53008 * 109.46800 * 239.99776 * 2 1 3 5 5 C 1.50698 * 109.47107 * 175.00049 * 4 2 1 6 6 H 1.07998 * 120.00083 * 0.27704 * 5 4 2 7 7 C 1.37872 * 119.99845 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00306 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99804 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47430 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47490 * 119.99761 * 9 7 5 12 12 H 1.48505 * 109.47304 * 239.99638 * 9 7 5 13 13 O 1.42898 * 109.47203 * 120.00383 * 2 1 3 14 14 C 1.35905 * 117.00004 * 275.23564 * 13 2 1 15 15 C 1.38641 * 119.94728 * 5.40365 * 14 13 2 16 16 C 1.38118 * 119.87015 * 179.97438 * 15 14 13 17 17 C 1.38175 * 119.99698 * 0.02562 * 16 15 14 18 18 C 1.38499 * 120.33205 * 0.02562 * 17 16 15 19 19 C 1.38165 * 119.88267 * 359.69787 * 18 17 16 20 20 C 1.51360 * 109.77888 * 179.84070 * 19 18 17 21 21 H 1.09001 * 110.17043 * 102.09726 * 20 19 18 22 22 N 1.46900 * 110.45848 * 224.16598 * 20 19 18 23 23 C 1.54346 * 105.22916 * 343.20683 * 20 19 18 24 24 C 1.51378 * 130.36214 * 179.97438 * 18 17 16 25 25 H 1.08995 * 109.47278 * 59.99328 * 1 2 3 26 26 H 1.08999 * 109.47399 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46705 * 299.99709 * 1 2 3 28 28 H 1.09001 * 109.47049 * 55.00231 * 4 2 1 29 29 H 1.08997 * 109.47257 * 295.00513 * 4 2 1 30 30 H 0.97001 * 119.99734 * 179.97438 * 8 7 5 31 31 H 1.08001 * 120.06894 * 359.96383 * 15 14 13 32 32 H 1.08005 * 120.00324 * 179.97438 * 16 15 14 33 33 H 1.08003 * 119.83054 * 179.97438 * 17 16 15 34 34 H 1.00895 * 110.99879 * 177.36399 * 22 20 19 35 35 H 1.00895 * 110.99905 * 301.32424 * 22 20 19 36 36 H 1.09001 * 110.82475 * 267.89323 * 23 20 19 37 37 H 1.09000 * 110.98991 * 144.41494 * 23 20 19 38 38 H 1.08999 * 110.30663 * 316.08789 * 24 18 17 39 39 H 1.09010 * 110.30264 * 78.13860 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0399 -0.7214 -1.2493 5 6 3.5418 -0.6151 -1.3128 6 1 4.0793 -0.0898 -0.5372 7 6 4.2301 -1.1928 -2.3584 8 7 3.5761 -1.8371 -3.3001 9 14 6.0919 -1.0617 -2.4368 10 1 6.5837 -0.2922 -1.2659 11 1 6.6852 -2.4229 -2.4198 12 1 6.4869 -0.3652 -3.6875 13 8 2.0063 -0.6737 1.1667 14 6 2.1078 0.0613 2.3054 15 6 1.6514 1.3702 2.3272 16 6 1.7548 2.1155 3.4854 17 6 2.3129 1.5565 4.6192 18 6 2.7711 0.2496 4.6016 19 6 2.6646 -0.5018 3.4470 20 6 3.2353 -1.8840 3.6810 21 1 2.4298 -2.6031 3.8296 22 7 4.0775 -2.2903 2.5480 23 6 4.0857 -1.7598 4.9630 24 6 3.4124 -0.5791 5.6941 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.6053 -0.2618 -2.1370 29 1 1.7515 -1.7716 -1.2057 30 1 4.0604 -2.2433 -4.0359 31 1 1.2159 1.8063 1.4403 32 1 1.4003 3.1355 3.5048 33 1 2.3928 2.1418 5.5233 34 1 4.4968 -3.1928 2.7145 35 1 3.5508 -2.2894 1.6874 36 1 5.1218 -1.5243 4.7195 37 1 4.0270 -2.6698 5.5602 38 1 4.1581 0.0102 6.2277 39 1 2.6538 -0.9444 6.3864 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829189218.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:23 Heat of formation + Delta-G solvation = -46.128366 kcal Electronic energy + Delta-G solvation = -19982.641162 eV Core-core repulsion = 17081.704737 eV Total energy + Delta-G solvation = -2900.936426 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.52093 -39.48862 -36.79921 -35.45643 -33.66256 -33.07449 -30.41517 -29.92930 -29.23438 -26.42195 -25.31661 -23.68157 -22.84041 -21.32347 -20.85245 -18.66851 -18.41848 -17.11824 -17.03053 -16.55463 -16.44009 -15.95925 -15.68775 -15.07322 -14.93641 -14.43868 -14.22674 -13.99907 -13.68253 -13.55862 -13.40797 -13.22086 -12.77022 -12.69171 -12.54762 -12.39398 -12.34779 -11.96440 -11.93737 -11.74103 -11.60568 -11.24445 -11.01837 -10.57531 -9.77374 -9.33933 -8.90146 -8.19790 -6.26906 0.41662 0.60970 1.36628 1.38685 1.52469 2.41373 2.48860 2.85809 3.15540 3.54717 3.67279 3.79798 4.02350 4.11239 4.13365 4.22501 4.29691 4.34795 4.44113 4.49260 4.64150 4.76109 4.77453 4.88253 4.97267 5.02720 5.11140 5.15791 5.17292 5.31490 5.37949 5.49228 5.54594 5.58377 5.68151 5.78453 6.02847 6.21531 6.32344 6.61964 6.77184 6.85019 7.40576 8.91997 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.018964 B = 0.006765 C = 0.005706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.153054 B = 4138.212068 C = 4905.919829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.095 3.905 3 H 0.059 0.941 4 C 0.032 3.968 5 C -0.517 4.517 6 H 0.047 0.953 7 C 0.008 3.992 8 N -0.931 5.931 9 Si 0.955 3.045 10 H -0.273 1.273 11 H -0.279 1.279 12 H -0.276 1.276 13 O -0.313 6.313 14 C 0.134 3.866 15 C -0.234 4.234 16 C -0.079 4.079 17 C -0.159 4.159 18 C -0.063 4.063 19 C -0.161 4.161 20 C 0.135 3.865 21 H 0.039 0.961 22 N -0.853 5.853 23 C -0.108 4.108 24 C -0.072 4.072 25 H 0.079 0.921 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.023 0.977 29 H 0.000 1.000 30 H 0.263 0.737 31 H 0.131 0.869 32 H 0.152 0.848 33 H 0.150 0.850 34 H 0.343 0.657 35 H 0.346 0.654 36 H 0.073 0.927 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.331 4.157 18.169 18.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.039 3.961 3 H 0.077 0.923 4 C -0.005 4.005 5 C -0.555 4.555 6 H 0.065 0.935 7 C -0.189 4.189 8 N -0.571 5.571 9 Si 0.781 3.219 10 H -0.197 1.197 11 H -0.204 1.204 12 H -0.202 1.202 13 O -0.227 6.227 14 C 0.088 3.912 15 C -0.252 4.252 16 C -0.097 4.097 17 C -0.177 4.177 18 C -0.064 4.064 19 C -0.162 4.162 20 C 0.024 3.976 21 H 0.057 0.943 22 N -0.384 5.384 23 C -0.146 4.146 24 C -0.109 4.109 25 H 0.098 0.902 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.041 0.959 29 H 0.018 0.982 30 H 0.072 0.928 31 H 0.149 0.851 32 H 0.170 0.830 33 H 0.168 0.832 34 H 0.157 0.843 35 H 0.160 0.840 36 H 0.092 0.908 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.836 4.491 18.132 18.894 hybrid contribution 0.043 -0.809 -1.156 1.411 sum -2.793 3.682 16.977 17.594 Atomic orbital electron populations 1.22303 0.94407 1.02653 1.02996 1.22528 0.93682 0.95961 0.83882 0.92275 1.19090 0.95521 0.95059 0.90855 1.21380 0.92985 1.33916 1.07253 0.93456 1.25732 1.02831 0.94972 0.95395 1.70064 1.37183 1.37104 1.12796 0.85541 0.80559 0.77942 0.77866 1.19716 1.20443 1.20183 1.86109 1.80817 1.39000 1.16767 1.19146 0.94545 0.91229 0.86260 1.21417 1.08446 0.94154 1.01220 1.21164 0.96872 1.00151 0.91473 1.20798 1.02741 0.94405 0.99712 1.20780 0.96766 0.94003 0.94849 1.20098 1.04618 0.98538 0.92955 1.20788 0.93256 0.91445 0.92146 0.94302 1.58826 1.38769 1.35506 1.05326 1.22405 0.99163 0.99472 0.93571 1.21080 0.99846 0.94755 0.95176 0.90167 0.92569 0.91307 0.95932 0.98173 0.92812 0.85085 0.83028 0.83248 0.84346 0.84008 0.90835 0.88443 0.88602 0.88051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.70 9.17 71.98 0.66 -5.04 16 2 C 0.10 4.07 2.17 30.60 0.07 4.14 16 3 H 0.06 2.51 6.31 -2.39 -0.02 2.50 16 4 C 0.03 1.67 4.68 29.85 0.14 1.81 16 5 C -0.52 -30.00 8.88 25.60 0.23 -29.77 16 6 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 7 C 0.01 0.49 5.46 84.65 0.46 0.95 16 8 N -0.93 -56.57 13.29 21.45 0.28 -56.28 16 9 Si 0.96 46.27 29.54 68.60 2.03 48.29 16 10 H -0.27 -13.17 7.11 99.48 0.71 -12.46 16 11 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 13 O -0.31 -13.67 7.84 -92.48 -0.72 -14.40 16 14 C 0.13 5.16 6.59 22.53 0.15 5.31 16 15 C -0.23 -7.72 8.23 22.34 0.18 -7.53 16 16 C -0.08 -2.07 10.04 22.23 0.22 -1.84 16 17 C -0.16 -3.88 10.04 22.32 0.22 -3.66 16 18 C -0.06 -1.74 6.13 -19.60 -0.12 -1.86 16 19 C -0.16 -5.54 5.79 -19.50 -0.11 -5.65 16 20 C 0.13 4.17 3.95 44.84 0.18 4.35 16 21 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 22 N -0.85 -30.43 9.26 -169.01 -1.56 -31.99 16 23 C -0.11 -2.45 6.76 31.50 0.21 -2.24 16 24 C -0.07 -1.42 6.77 30.52 0.21 -1.21 16 25 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 26 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.07 2.07 6.89 -2.38 -0.02 2.05 16 28 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 30 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 31 H 0.13 4.16 5.41 -2.91 -0.02 4.15 16 32 H 0.15 2.93 8.06 -2.91 -0.02 2.90 16 33 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 34 H 0.34 10.28 9.06 -89.70 -0.81 9.47 16 35 H 0.35 14.63 7.30 -89.70 -0.65 13.97 16 36 H 0.07 1.81 8.09 -2.39 -0.02 1.79 16 37 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 Total: -1.00 -68.08 316.26 2.31 -65.77 By element: Atomic # 1 Polarization: 31.27 SS G_CDS: -0.41 Total: 30.86 kcal Atomic # 6 Polarization: -44.95 SS G_CDS: 2.70 Total: -42.25 kcal Atomic # 7 Polarization: -86.99 SS G_CDS: -1.28 Total: -88.27 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -0.72 Total: -14.40 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.29 kcal Total: -68.08 2.31 -65.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829189218.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.641 kcal (2) G-P(sol) polarization free energy of solvation -68.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds