Wall clock time and date at job start Mon Mar 30 2020 06:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47519 * 2 1 4 4 C 1.52998 * 109.47498 * 120.00478 * 2 1 3 5 5 C 1.50697 * 109.47344 * 184.99640 * 4 2 1 6 6 H 1.07991 * 120.00035 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99915 * 179.97438 * 5 4 2 8 8 N 1.31508 * 119.99881 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 119.99782 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47618 * 90.00106 * 9 7 5 11 11 H 1.48503 * 109.47151 * 209.99681 * 9 7 5 12 12 H 1.48498 * 109.47267 * 329.99876 * 9 7 5 13 13 O 1.42906 * 109.46895 * 240.00332 * 2 1 3 14 14 C 1.35898 * 116.99734 * 84.95059 * 13 2 1 15 15 C 1.38750 * 120.09671 * 354.55858 * 14 13 2 16 16 C 1.38003 * 119.88401 * 179.97438 * 15 14 13 17 17 C 1.38545 * 120.28732 * 0.02562 * 16 15 14 18 18 C 1.38258 * 119.93911 * 359.97438 * 17 16 15 19 19 C 1.38418 * 119.90207 * 359.74262 * 18 17 16 20 20 C 1.51382 * 109.76087 * 179.97438 * 18 17 16 21 21 C 1.54341 * 105.16575 * 17.20903 * 20 18 17 22 22 C 1.51394 * 130.32498 * 179.97438 * 17 16 15 23 23 H 1.08994 * 110.30105 * 43.87419 * 22 17 16 24 24 N 1.46901 * 110.29847 * 281.72777 * 22 17 16 25 25 H 1.09002 * 109.47519 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47218 * 299.99859 * 1 2 3 27 27 H 1.09006 * 109.47725 * 59.99266 * 1 2 3 28 28 H 1.09000 * 109.46952 * 64.99190 * 4 2 1 29 29 H 1.09001 * 109.47035 * 304.99906 * 4 2 1 30 30 H 0.97007 * 120.00173 * 179.97438 * 8 7 5 31 31 H 1.08003 * 120.05943 * 359.97438 * 15 14 13 32 32 H 1.08002 * 119.85548 * 180.02562 * 16 15 14 33 33 H 1.08003 * 119.91125 * 180.25243 * 19 18 17 34 34 H 1.09000 * 110.30281 * 136.13167 * 20 18 17 35 35 H 1.08998 * 110.30580 * 258.28454 * 20 18 17 36 36 H 1.09007 * 110.82075 * 91.85126 * 21 20 18 37 37 H 1.09000 * 110.82152 * 215.20162 * 21 20 18 38 38 H 1.00897 * 111.00264 * 61.45591 * 24 22 17 39 39 H 1.00900 * 110.99496 * 185.40824 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5419 -0.6151 1.3125 6 1 4.0789 -0.0856 0.5395 7 6 4.2304 -1.1929 2.3581 8 7 3.5763 -1.8363 3.3003 9 14 6.0919 -1.0605 2.4370 10 1 6.4699 0.1621 3.1904 11 1 6.6445 -2.2556 3.1239 12 1 6.6416 -0.9829 1.0597 13 8 2.0062 -0.6736 -1.1669 14 6 2.1114 0.0625 -2.3044 15 6 1.6584 1.3737 -2.3290 16 6 1.7678 2.1174 -3.4864 17 6 2.3277 1.5602 -4.6246 18 6 2.7798 0.2538 -4.6026 19 6 2.6767 -0.4926 -3.4415 20 6 3.3427 -0.1158 -5.9584 21 6 3.5866 1.2293 -6.6748 22 6 2.5567 2.1574 -5.9968 23 1 2.9578 3.1670 -5.9077 24 7 1.3028 2.1717 -6.7621 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3635 0.5140 -0.8899 28 1 1.7515 -1.7716 1.2055 29 1 1.6054 -0.2619 2.1369 30 1 4.0607 -2.2432 4.0357 31 1 1.2209 1.8116 -1.4440 32 1 1.4154 3.1381 -3.5049 33 1 3.0336 -1.5118 -3.4230 34 1 4.2809 -0.6586 -5.8432 35 1 2.6235 -0.7162 -6.5156 36 1 4.6022 1.5837 -6.4984 37 1 3.3889 1.1408 -7.7430 38 1 0.6059 2.7396 -6.3039 39 1 1.4602 2.4856 -7.7080 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829189432.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:58 Heat of formation + Delta-G solvation = -26.938509 kcal Electronic energy + Delta-G solvation = -19296.669168 eV Core-core repulsion = 16396.564877 eV Total energy + Delta-G solvation = -2900.104291 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.24316 -38.53834 -35.36205 -33.34957 -32.59998 -31.63586 -29.73409 -28.34474 -27.39356 -25.68714 -23.34294 -22.60212 -21.42938 -20.29440 -19.40582 -17.30213 -16.37841 -16.18908 -15.92263 -15.40261 -14.81903 -14.50459 -14.35798 -14.17876 -13.61990 -13.13961 -12.90897 -12.65980 -12.30929 -11.90900 -11.78062 -11.65514 -11.56298 -11.41524 -11.31617 -11.06881 -10.82688 -10.72456 -10.51391 -10.29364 -9.94664 -9.35890 -9.10176 -8.84073 -8.48943 -8.37924 -7.58661 -6.00942 -4.02156 1.63525 1.75508 3.33060 3.39310 3.44658 3.86511 4.00782 4.43985 4.47068 4.55578 4.66710 5.02224 5.14338 5.18035 5.36143 5.45516 5.51792 5.57843 5.63267 5.70136 5.76360 5.78525 5.92255 5.95662 6.03549 6.05880 6.24101 6.39857 6.55584 6.59029 6.70318 6.85139 6.87819 6.98040 7.09435 7.27128 7.51263 7.60954 7.95794 8.19497 8.37979 9.01543 9.61158 11.10538 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.025345 B = 0.004759 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.470496 B = 5882.389846 C = 6556.367464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.087 3.913 3 H 0.062 0.938 4 C 0.025 3.975 5 C -0.514 4.514 6 H 0.056 0.944 7 C 0.058 3.942 8 N -0.897 5.897 9 Si 0.892 3.108 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.273 1.273 13 O -0.290 6.290 14 C 0.159 3.841 15 C -0.217 4.217 16 C -0.061 4.061 17 C -0.152 4.152 18 C -0.044 4.044 19 C -0.155 4.155 20 C -0.074 4.074 21 C -0.114 4.114 22 C 0.138 3.862 23 H 0.038 0.962 24 N -0.838 5.838 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.048 0.952 28 H 0.029 0.971 29 H 0.038 0.962 30 H 0.261 0.739 31 H 0.131 0.869 32 H 0.112 0.888 33 H 0.126 0.874 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.342 0.658 39 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.735 8.148 -17.980 20.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.031 3.969 3 H 0.080 0.920 4 C -0.011 4.011 5 C -0.552 4.552 6 H 0.074 0.926 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.720 3.280 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.198 1.198 13 O -0.203 6.203 14 C 0.112 3.888 15 C -0.236 4.236 16 C -0.080 4.080 17 C -0.153 4.153 18 C -0.045 4.045 19 C -0.174 4.174 20 C -0.111 4.111 21 C -0.152 4.152 22 C 0.028 3.972 23 H 0.056 0.944 24 N -0.369 5.369 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.067 0.933 28 H 0.047 0.953 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.149 0.851 32 H 0.130 0.870 33 H 0.144 0.856 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.154 0.846 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.675 7.053 -17.634 19.344 hybrid contribution 1.023 1.285 0.275 1.665 sum -2.652 8.339 -17.358 19.439 Atomic orbital electron populations 1.22414 0.97027 1.02621 1.01427 1.22869 0.91811 0.97103 0.85102 0.91987 1.19269 0.96584 0.96517 0.88771 1.21126 0.91708 1.34447 1.07904 0.92612 1.24972 0.98462 0.95229 0.95659 1.69949 1.35573 1.36036 1.12085 0.86584 0.85720 0.77499 0.78206 1.20692 1.21168 1.19811 1.86274 1.79780 1.38029 1.16170 1.19016 0.92197 0.90092 0.87506 1.21214 1.08060 0.94787 0.99546 1.20270 0.97406 0.98749 0.91556 1.20079 1.05060 0.95869 0.94288 1.20170 0.96667 0.93726 0.93891 1.19809 1.05556 1.01257 0.90736 1.20951 1.00627 0.97507 0.91986 1.22318 0.98158 0.95157 0.99580 1.20584 0.89856 0.96697 0.90098 0.94370 1.58712 1.10064 1.62517 1.05614 0.91913 0.91416 0.93263 0.95274 0.94385 0.92949 0.85117 0.86957 0.85590 0.90887 0.89904 0.90841 0.90512 0.84561 0.84929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.08 9.17 37.15 0.34 -2.74 16 2 C 0.09 1.83 2.17 -26.74 -0.06 1.78 16 3 H 0.06 1.28 6.31 -51.93 -0.33 0.95 16 4 C 0.03 0.65 4.68 -27.88 -0.13 0.52 16 5 C -0.51 -14.70 8.88 -34.44 -0.31 -15.01 16 6 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 8 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 9 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 13 O -0.29 -6.39 9.55 -19.42 -0.19 -6.57 16 14 C 0.16 3.05 6.60 -39.26 -0.26 2.79 16 15 C -0.22 -3.65 8.24 -39.48 -0.33 -3.98 16 16 C -0.06 -0.89 10.03 -39.55 -0.40 -1.29 16 17 C -0.15 -2.15 5.76 -104.16 -0.60 -2.75 16 18 C -0.04 -0.66 6.13 -104.21 -0.64 -1.30 16 19 C -0.15 -2.71 9.98 -39.38 -0.39 -3.11 16 20 C -0.07 -0.86 6.77 -26.85 -0.18 -1.04 16 21 C -0.11 -1.12 6.76 -25.33 -0.17 -1.29 16 22 C 0.14 1.50 3.99 -67.83 -0.27 1.23 16 23 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 24 N -0.84 -7.86 9.26 -4.77 -0.04 -7.91 16 25 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.05 0.77 6.91 -51.93 -0.36 0.41 16 28 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.13 2.09 5.44 -52.48 -0.29 1.80 16 32 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 33 H 0.13 2.13 8.06 -52.48 -0.42 1.71 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 37 H 0.08 0.62 8.03 -51.93 -0.42 0.21 16 38 H 0.34 2.95 9.06 -39.29 -0.36 2.60 16 39 H 0.34 2.36 8.98 -39.29 -0.35 2.01 16 LS Contribution 319.62 15.07 4.82 4.82 Total: -1.00 -31.43 319.62 -9.05 -40.48 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -5.87 Total: 2.96 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: -3.49 Total: -24.61 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: 0.69 Total: -34.11 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: -0.19 Total: -6.57 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.43 -9.05 -40.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829189432.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.543 kcal (2) G-P(sol) polarization free energy of solvation -31.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds