Wall clock time and date at job start Mon Mar 30 2020 06:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47519 * 2 1 4 4 C 1.52998 * 109.47498 * 120.00478 * 2 1 3 5 5 C 1.50697 * 109.47344 * 184.99640 * 4 2 1 6 6 H 1.07991 * 120.00035 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99915 * 179.97438 * 5 4 2 8 8 N 1.31508 * 119.99881 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 119.99782 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47618 * 90.00106 * 9 7 5 11 11 H 1.48503 * 109.47151 * 209.99681 * 9 7 5 12 12 H 1.48498 * 109.47267 * 329.99876 * 9 7 5 13 13 O 1.42906 * 109.46895 * 240.00332 * 2 1 3 14 14 C 1.35898 * 116.99734 * 84.95059 * 13 2 1 15 15 C 1.38750 * 120.09671 * 354.55858 * 14 13 2 16 16 C 1.38003 * 119.88401 * 179.97438 * 15 14 13 17 17 C 1.38545 * 120.28732 * 0.02562 * 16 15 14 18 18 C 1.38258 * 119.93911 * 359.97438 * 17 16 15 19 19 C 1.38418 * 119.90207 * 359.74262 * 18 17 16 20 20 C 1.51382 * 109.76087 * 179.97438 * 18 17 16 21 21 C 1.54341 * 105.16575 * 17.20903 * 20 18 17 22 22 C 1.51394 * 130.32498 * 179.97438 * 17 16 15 23 23 H 1.08994 * 110.30105 * 43.87419 * 22 17 16 24 24 N 1.46901 * 110.29847 * 281.72777 * 22 17 16 25 25 H 1.09002 * 109.47519 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47218 * 299.99859 * 1 2 3 27 27 H 1.09006 * 109.47725 * 59.99266 * 1 2 3 28 28 H 1.09000 * 109.46952 * 64.99190 * 4 2 1 29 29 H 1.09001 * 109.47035 * 304.99906 * 4 2 1 30 30 H 0.97007 * 120.00173 * 179.97438 * 8 7 5 31 31 H 1.08003 * 120.05943 * 359.97438 * 15 14 13 32 32 H 1.08002 * 119.85548 * 180.02562 * 16 15 14 33 33 H 1.08003 * 119.91125 * 180.25243 * 19 18 17 34 34 H 1.09000 * 110.30281 * 136.13167 * 20 18 17 35 35 H 1.08998 * 110.30580 * 258.28454 * 20 18 17 36 36 H 1.09007 * 110.82075 * 91.85126 * 21 20 18 37 37 H 1.09000 * 110.82152 * 215.20162 * 21 20 18 38 38 H 1.00897 * 111.00264 * 61.45591 * 24 22 17 39 39 H 1.00900 * 110.99496 * 185.40824 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5419 -0.6151 1.3125 6 1 4.0789 -0.0856 0.5395 7 6 4.2304 -1.1929 2.3581 8 7 3.5763 -1.8363 3.3003 9 14 6.0919 -1.0605 2.4370 10 1 6.4699 0.1621 3.1904 11 1 6.6445 -2.2556 3.1239 12 1 6.6416 -0.9829 1.0597 13 8 2.0062 -0.6736 -1.1669 14 6 2.1114 0.0625 -2.3044 15 6 1.6584 1.3737 -2.3290 16 6 1.7678 2.1174 -3.4864 17 6 2.3277 1.5602 -4.6246 18 6 2.7798 0.2538 -4.6026 19 6 2.6767 -0.4926 -3.4415 20 6 3.3427 -0.1158 -5.9584 21 6 3.5866 1.2293 -6.6748 22 6 2.5567 2.1574 -5.9968 23 1 2.9578 3.1670 -5.9077 24 7 1.3028 2.1717 -6.7621 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3635 0.5140 -0.8899 28 1 1.7515 -1.7716 1.2055 29 1 1.6054 -0.2619 2.1369 30 1 4.0607 -2.2432 4.0357 31 1 1.2209 1.8116 -1.4440 32 1 1.4154 3.1381 -3.5049 33 1 3.0336 -1.5118 -3.4230 34 1 4.2809 -0.6586 -5.8432 35 1 2.6235 -0.7162 -6.5156 36 1 4.6022 1.5837 -6.4984 37 1 3.3889 1.1408 -7.7430 38 1 0.6059 2.7396 -6.3039 39 1 1.4602 2.4856 -7.7080 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829189432.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:58 Heat of formation + Delta-G solvation = -46.704072 kcal Electronic energy + Delta-G solvation = -19297.526267 eV Core-core repulsion = 16396.564877 eV Total energy + Delta-G solvation = -2900.961390 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.47457 -39.87325 -36.57112 -35.29784 -33.59726 -33.37673 -30.91648 -29.63293 -29.15792 -26.65407 -25.29831 -23.78630 -22.92695 -21.25566 -20.85988 -18.77675 -18.49985 -17.21509 -16.95339 -16.68805 -16.28955 -16.01049 -15.74988 -15.43574 -14.70093 -14.47042 -14.25336 -14.05997 -13.90259 -13.61729 -13.36194 -13.03969 -12.95616 -12.69165 -12.62029 -12.44419 -12.36201 -12.08472 -12.00583 -11.67300 -11.58230 -11.27194 -11.04281 -10.60737 -9.71262 -9.57652 -8.89733 -8.23202 -6.32443 0.40549 0.50414 1.36168 1.37874 1.49278 2.38513 2.41429 2.78680 3.11096 3.53662 3.61743 3.85458 3.93491 4.07573 4.09639 4.21666 4.24067 4.36516 4.45365 4.47981 4.56483 4.72325 4.77617 4.83851 4.98923 5.00436 5.04505 5.15667 5.21029 5.28165 5.34386 5.37518 5.48614 5.52178 5.71002 5.74017 5.93364 6.16988 6.28662 6.68181 6.71090 6.79417 7.35106 8.88614 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.025345 B = 0.004759 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.470496 B = 5882.389846 C = 6556.367464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.095 3.905 3 H 0.065 0.935 4 C 0.029 3.971 5 C -0.533 4.533 6 H 0.048 0.952 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.960 3.040 10 H -0.267 1.267 11 H -0.278 1.278 12 H -0.272 1.272 13 O -0.323 6.323 14 C 0.123 3.877 15 C -0.224 4.224 16 C -0.061 4.061 17 C -0.148 4.148 18 C -0.052 4.052 19 C -0.176 4.176 20 C -0.075 4.075 21 C -0.108 4.108 22 C 0.141 3.859 23 H 0.053 0.947 24 N -0.844 5.844 25 H 0.055 0.945 26 H 0.083 0.917 27 H 0.070 0.930 28 H -0.002 1.002 29 H 0.027 0.973 30 H 0.265 0.735 31 H 0.135 0.865 32 H 0.144 0.856 33 H 0.117 0.883 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.347 0.653 39 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.162 10.091 -20.321 22.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.039 3.961 3 H 0.083 0.917 4 C -0.008 4.008 5 C -0.571 4.571 6 H 0.067 0.933 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.785 3.215 10 H -0.193 1.193 11 H -0.204 1.204 12 H -0.197 1.197 13 O -0.237 6.237 14 C 0.077 3.923 15 C -0.243 4.243 16 C -0.079 4.079 17 C -0.149 4.149 18 C -0.053 4.053 19 C -0.195 4.195 20 C -0.112 4.112 21 C -0.146 4.146 22 C 0.030 3.970 23 H 0.071 0.929 24 N -0.377 5.377 25 H 0.074 0.926 26 H 0.101 0.899 27 H 0.089 0.911 28 H 0.016 0.984 29 H 0.045 0.955 30 H 0.074 0.926 31 H 0.153 0.847 32 H 0.162 0.838 33 H 0.135 0.865 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.118 0.882 38 H 0.160 0.840 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -3.111 9.013 -20.001 22.157 hybrid contribution 0.827 0.691 0.897 1.402 sum -2.284 9.703 -19.104 21.549 Atomic orbital electron populations 1.22306 0.94110 1.02769 1.03192 1.22585 0.93987 0.96044 0.83477 0.91701 1.19118 0.95548 0.95082 0.91083 1.21439 0.93272 1.34550 1.07830 0.93331 1.25852 1.03536 0.94724 0.95203 1.70061 1.37568 1.36722 1.12684 0.85522 0.79613 0.78118 0.78282 1.19255 1.20360 1.19665 1.86175 1.81046 1.39312 1.17149 1.19307 0.94687 0.91355 0.86965 1.21333 1.08163 0.94010 1.00760 1.20623 0.96595 0.99920 0.90780 1.20626 1.02956 0.95523 0.95818 1.20607 0.96203 0.94122 0.94352 1.19975 1.06409 1.01456 0.91652 1.21069 1.00843 0.99070 0.90232 1.22368 0.98401 0.93294 1.00547 1.20594 0.90788 0.97362 0.88272 0.92897 1.58638 1.09468 1.63104 1.06494 0.92592 0.89863 0.91131 0.98394 0.95523 0.92609 0.84714 0.83811 0.86523 0.90235 0.89413 0.89937 0.88245 0.84017 0.83082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.82 9.17 71.98 0.66 -5.16 16 2 C 0.09 4.14 2.17 30.59 0.07 4.21 16 3 H 0.07 2.75 6.31 -2.39 -0.02 2.73 16 4 C 0.03 1.55 4.68 29.85 0.14 1.69 16 5 C -0.53 -31.52 8.88 25.60 0.23 -31.29 16 6 H 0.05 2.87 7.74 -2.92 -0.02 2.85 16 7 C 0.00 0.28 5.46 84.66 0.46 0.74 16 8 N -0.93 -57.16 13.29 21.45 0.28 -56.87 16 9 Si 0.96 45.78 29.54 68.60 2.03 47.80 16 10 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 13 O -0.32 -14.89 9.55 -92.41 -0.88 -15.77 16 14 C 0.12 4.83 6.60 22.48 0.15 4.98 16 15 C -0.22 -7.42 8.24 22.34 0.18 -7.24 16 16 C -0.06 -1.64 10.03 22.29 0.22 -1.42 16 17 C -0.15 -3.85 5.76 -19.57 -0.11 -3.96 16 18 C -0.05 -1.52 6.13 -19.60 -0.12 -1.64 16 19 C -0.18 -6.34 9.98 22.40 0.22 -6.12 16 20 C -0.08 -1.60 6.77 30.52 0.21 -1.39 16 21 C -0.11 -1.73 6.76 31.50 0.21 -1.51 16 22 C 0.14 2.53 3.99 44.84 0.18 2.71 16 23 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 24 N -0.84 -12.73 9.26 -168.99 -1.57 -14.30 16 25 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 27 H 0.07 2.15 6.91 -2.38 -0.02 2.13 16 28 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 29 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.27 15.26 8.31 -92.70 -0.77 14.49 16 31 H 0.14 4.23 5.44 -2.91 -0.02 4.21 16 32 H 0.14 2.92 8.06 -2.91 -0.02 2.90 16 33 H 0.12 4.21 8.06 -2.91 -0.02 4.19 16 34 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 37 H 0.10 1.17 8.03 -2.39 -0.02 1.15 16 38 H 0.35 4.77 9.06 -89.70 -0.81 3.96 16 39 H 0.35 3.52 8.98 -89.69 -0.81 2.71 16 Total: -1.00 -69.67 319.62 2.00 -67.66 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -0.56 Total: 16.87 kcal Atomic # 6 Polarization: -48.09 SS G_CDS: 2.70 Total: -45.39 kcal Atomic # 7 Polarization: -69.89 SS G_CDS: -1.28 Total: -71.17 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.88 Total: -15.77 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.80 kcal Total: -69.67 2.00 -67.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829189432.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.960 kcal (2) G-P(sol) polarization free energy of solvation -69.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds