Wall clock time and date at job start Mon Mar 30 2020 06:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47315 * 2 1 4 4 C 1.53006 * 109.47181 * 240.00113 * 2 1 3 5 5 C 1.50702 * 109.47180 * 174.99822 * 4 2 1 6 6 H 1.07998 * 120.00007 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99726 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00262 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99713 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47016 * 90.00136 * 9 7 5 11 11 H 1.48499 * 109.47089 * 210.00223 * 9 7 5 12 12 H 1.48499 * 109.47150 * 330.00334 * 9 7 5 13 13 O 1.42902 * 109.47413 * 119.99940 * 2 1 3 14 14 C 1.35901 * 116.99738 * 275.36327 * 13 2 1 15 15 C 1.38746 * 120.08917 * 185.35137 * 14 13 2 16 16 C 1.38001 * 119.87996 * 179.97438 * 15 14 13 17 17 C 1.38549 * 120.29132 * 0.02562 * 16 15 14 18 18 C 1.38263 * 119.93149 * 359.97438 * 17 16 15 19 19 C 1.38409 * 119.90632 * 359.74055 * 18 17 16 20 20 C 1.51380 * 109.75467 * 179.97438 * 18 17 16 21 21 C 1.54342 * 105.16904 * 17.20558 * 20 18 17 22 22 C 1.51383 * 130.32828 * 179.97438 * 17 16 15 23 23 H 1.09005 * 110.30497 * 43.87536 * 22 17 16 24 24 N 1.46908 * 110.30280 * 281.73040 * 22 17 16 25 25 H 1.09004 * 109.47315 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47344 * 300.00151 * 1 2 3 27 27 H 1.09007 * 109.47192 * 59.99886 * 1 2 3 28 28 H 1.09002 * 109.46745 * 294.99681 * 4 2 1 29 29 H 1.09002 * 109.46820 * 54.99774 * 4 2 1 30 30 H 0.97002 * 120.00079 * 180.02562 * 8 7 5 31 31 H 1.08000 * 120.06106 * 359.97438 * 15 14 13 32 32 H 1.08006 * 119.85424 * 180.02562 * 16 15 14 33 33 H 1.08001 * 119.91374 * 180.25657 * 19 18 17 34 34 H 1.08994 * 110.30234 * 136.12946 * 20 18 17 35 35 H 1.08999 * 110.30394 * 258.28599 * 20 18 17 36 36 H 1.09002 * 110.82423 * 91.85567 * 21 20 18 37 37 H 1.09005 * 110.82039 * 215.20419 * 21 20 18 38 38 H 1.00897 * 110.99879 * 61.45369 * 24 22 17 39 39 H 1.00900 * 110.99657 * 185.41028 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3128 6 1 4.0790 -0.0861 -0.5393 7 6 4.2304 -1.1935 -2.3579 8 7 3.5764 -1.8378 -3.2996 9 14 6.0922 -1.0622 -2.4362 10 1 6.7000 -2.2149 -1.7241 11 1 6.5297 -1.0704 -3.8553 12 1 6.5268 0.2029 -1.7915 13 8 2.0063 -0.6736 1.1668 14 6 2.1053 0.0608 2.3060 15 6 2.6639 -0.4971 3.4469 16 6 2.7628 0.2528 4.6012 17 6 2.3061 1.5606 4.6262 18 6 1.7490 2.1187 3.4905 19 6 1.6540 1.3709 2.3296 20 6 1.3309 3.5457 3.7738 21 6 2.0852 3.9394 5.0615 22 6 2.3006 2.5751 5.7498 23 1 3.2556 2.5627 6.2753 24 7 1.2007 2.2964 6.6829 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.7516 -1.7715 -1.2056 29 1 1.6053 -0.2617 -2.1370 30 1 4.0608 -2.2452 -4.0346 31 1 3.0208 -1.5163 3.4317 32 1 3.1981 -0.1818 5.4890 33 1 1.2226 1.8081 1.4412 34 1 1.6238 4.1963 2.9499 35 1 0.2542 3.5994 3.9349 36 1 3.0402 4.4079 4.8233 37 1 1.4765 4.5979 5.6812 38 1 1.3068 1.3863 7.1054 39 1 1.1325 3.0161 7.3867 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829189433.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:00 Heat of formation + Delta-G solvation = -27.078382 kcal Electronic energy + Delta-G solvation = -19361.512086 eV Core-core repulsion = 16461.401730 eV Total energy + Delta-G solvation = -2900.110356 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.26159 -38.48473 -35.43679 -33.34456 -32.63691 -31.45688 -29.89068 -28.23793 -27.44860 -25.63911 -23.48467 -22.70680 -20.75622 -20.51094 -19.71845 -17.23499 -16.36655 -16.22603 -15.94934 -15.48571 -14.61308 -14.54058 -14.41824 -13.81315 -13.62002 -13.47344 -13.06348 -12.59972 -12.23445 -11.93462 -11.71089 -11.66977 -11.51030 -11.39218 -11.28841 -11.14234 -10.83565 -10.70986 -10.52722 -10.31383 -9.90951 -9.36582 -9.10058 -8.83835 -8.50761 -8.37752 -7.57668 -6.00789 -4.02024 1.64027 1.75167 3.33746 3.39483 3.43576 3.92970 4.02702 4.38443 4.47019 4.55127 4.62996 5.01943 5.07850 5.25607 5.36439 5.39659 5.51921 5.60210 5.67701 5.71219 5.77412 5.79938 5.90567 5.96918 6.03179 6.08525 6.26185 6.35390 6.57424 6.59168 6.70242 6.82160 6.88740 6.98404 7.11137 7.27255 7.51723 7.61114 7.95946 8.19524 8.38144 9.01681 9.61284 11.10688 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.026566 B = 0.004686 C = 0.004430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.712730 B = 5973.484025 C = 6319.405219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.086 3.914 3 H 0.062 0.938 4 C 0.026 3.974 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.058 3.942 8 N -0.897 5.897 9 Si 0.892 3.108 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 O -0.290 6.290 14 C 0.159 3.841 15 C -0.165 4.165 16 C -0.063 4.063 17 C -0.153 4.153 18 C -0.042 4.042 19 C -0.207 4.207 20 C -0.076 4.076 21 C -0.114 4.114 22 C 0.138 3.862 23 H 0.039 0.961 24 N -0.839 5.839 25 H 0.062 0.938 26 H 0.049 0.951 27 H 0.067 0.933 28 H 0.029 0.971 29 H 0.038 0.962 30 H 0.261 0.739 31 H 0.130 0.870 32 H 0.117 0.883 33 H 0.128 0.872 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.342 0.658 39 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.473 9.398 17.235 20.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.031 3.969 3 H 0.080 0.920 4 C -0.011 4.011 5 C -0.552 4.552 6 H 0.074 0.926 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.720 3.280 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.199 1.199 13 O -0.202 6.202 14 C 0.111 3.889 15 C -0.184 4.184 16 C -0.081 4.081 17 C -0.154 4.154 18 C -0.043 4.043 19 C -0.225 4.225 20 C -0.113 4.113 21 C -0.152 4.152 22 C 0.028 3.972 23 H 0.057 0.943 24 N -0.369 5.369 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.086 0.914 28 H 0.047 0.953 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.148 0.852 32 H 0.135 0.865 33 H 0.146 0.854 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.155 0.845 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.874 9.167 16.371 19.385 hybrid contribution 1.699 0.026 0.487 1.767 sum -3.175 9.193 16.858 19.462 Atomic orbital electron populations 1.22413 0.97022 1.02595 1.01462 1.22869 0.91826 0.97127 0.85122 0.91980 1.19269 0.96576 0.96495 0.88783 1.21129 0.91703 1.34448 1.07890 0.92612 1.24972 0.98446 0.95256 0.95641 1.69950 1.35540 1.36004 1.12155 0.86582 0.85776 0.78556 0.77061 1.20599 1.21229 1.19900 1.86288 1.79750 1.38074 1.16089 1.19062 0.92298 0.89862 0.87659 1.20302 1.05377 1.01275 0.91421 1.20261 0.98287 0.92567 0.97003 1.20082 1.04957 0.94861 0.95452 1.20216 0.95652 0.95598 0.92848 1.20785 1.08344 0.94466 0.98945 1.20969 1.00659 0.92384 0.97263 1.22314 1.00509 0.95758 0.96624 1.20582 0.91777 0.93219 0.91635 0.94345 1.58713 1.47823 1.07302 1.23089 0.91931 0.93241 0.91419 0.95292 0.94372 0.92951 0.85249 0.86548 0.85411 0.90997 0.89988 0.90857 0.90539 0.84536 0.84936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.12 9.17 37.15 0.34 -2.78 16 2 C 0.09 1.83 2.17 -26.73 -0.06 1.77 16 3 H 0.06 1.30 6.31 -51.93 -0.33 0.97 16 4 C 0.03 0.66 4.68 -27.88 -0.13 0.53 16 5 C -0.51 -14.70 8.88 -34.44 -0.31 -15.01 16 6 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 8 N -0.90 -26.94 13.29 55.43 0.74 -26.21 16 9 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 13 O -0.29 -6.37 9.56 -19.43 -0.19 -6.55 16 14 C 0.16 3.03 6.59 -39.26 -0.26 2.77 16 15 C -0.17 -2.80 9.99 -39.48 -0.39 -3.19 16 16 C -0.06 -0.90 10.03 -39.55 -0.40 -1.30 16 17 C -0.15 -2.15 5.76 -104.16 -0.60 -2.75 16 18 C -0.04 -0.64 6.13 -104.22 -0.64 -1.28 16 19 C -0.21 -3.56 8.24 -39.39 -0.32 -3.88 16 20 C -0.08 -0.90 6.77 -26.85 -0.18 -1.08 16 21 C -0.11 -1.13 6.76 -25.33 -0.17 -1.30 16 22 C 0.14 1.50 3.99 -67.83 -0.27 1.23 16 23 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 24 N -0.84 -7.85 9.27 -4.77 -0.04 -7.89 16 25 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.05 0.79 6.90 -51.93 -0.36 0.43 16 27 H 0.07 1.09 8.14 -51.92 -0.42 0.66 16 28 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.13 2.08 8.06 -52.49 -0.42 1.66 16 32 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 33 H 0.13 2.13 5.42 -52.49 -0.28 1.85 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.63 8.03 -51.93 -0.42 0.21 16 38 H 0.34 2.93 9.06 -39.29 -0.36 2.58 16 39 H 0.34 2.36 8.98 -39.29 -0.35 2.01 16 LS Contribution 319.59 15.07 4.82 4.82 Total: -1.00 -31.43 319.59 -9.05 -40.48 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -5.87 Total: 3.00 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: -3.49 Total: -24.68 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: 0.69 Total: -34.10 kcal Atomic # 8 Polarization: -6.37 SS G_CDS: -0.19 Total: -6.55 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.43 -9.05 -40.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829189433.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.400 kcal (2) G-P(sol) polarization free energy of solvation -31.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds