Wall clock time and date at job start Mon Mar 30 2020 06:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47315 * 2 1 4 4 C 1.53006 * 109.47181 * 240.00113 * 2 1 3 5 5 C 1.50702 * 109.47180 * 174.99822 * 4 2 1 6 6 H 1.07998 * 120.00007 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99726 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00262 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99713 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47016 * 90.00136 * 9 7 5 11 11 H 1.48499 * 109.47089 * 210.00223 * 9 7 5 12 12 H 1.48499 * 109.47150 * 330.00334 * 9 7 5 13 13 O 1.42902 * 109.47413 * 119.99940 * 2 1 3 14 14 C 1.35901 * 116.99738 * 275.36327 * 13 2 1 15 15 C 1.38746 * 120.08917 * 185.35137 * 14 13 2 16 16 C 1.38001 * 119.87996 * 179.97438 * 15 14 13 17 17 C 1.38549 * 120.29132 * 0.02562 * 16 15 14 18 18 C 1.38263 * 119.93149 * 359.97438 * 17 16 15 19 19 C 1.38409 * 119.90632 * 359.74055 * 18 17 16 20 20 C 1.51380 * 109.75467 * 179.97438 * 18 17 16 21 21 C 1.54342 * 105.16904 * 17.20558 * 20 18 17 22 22 C 1.51383 * 130.32828 * 179.97438 * 17 16 15 23 23 H 1.09005 * 110.30497 * 43.87536 * 22 17 16 24 24 N 1.46908 * 110.30280 * 281.73040 * 22 17 16 25 25 H 1.09004 * 109.47315 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47344 * 300.00151 * 1 2 3 27 27 H 1.09007 * 109.47192 * 59.99886 * 1 2 3 28 28 H 1.09002 * 109.46745 * 294.99681 * 4 2 1 29 29 H 1.09002 * 109.46820 * 54.99774 * 4 2 1 30 30 H 0.97002 * 120.00079 * 180.02562 * 8 7 5 31 31 H 1.08000 * 120.06106 * 359.97438 * 15 14 13 32 32 H 1.08006 * 119.85424 * 180.02562 * 16 15 14 33 33 H 1.08001 * 119.91374 * 180.25657 * 19 18 17 34 34 H 1.08994 * 110.30234 * 136.12946 * 20 18 17 35 35 H 1.08999 * 110.30394 * 258.28599 * 20 18 17 36 36 H 1.09002 * 110.82423 * 91.85567 * 21 20 18 37 37 H 1.09005 * 110.82039 * 215.20419 * 21 20 18 38 38 H 1.00897 * 110.99879 * 61.45369 * 24 22 17 39 39 H 1.00900 * 110.99657 * 185.41028 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3128 6 1 4.0790 -0.0861 -0.5393 7 6 4.2304 -1.1935 -2.3579 8 7 3.5764 -1.8378 -3.2996 9 14 6.0922 -1.0622 -2.4362 10 1 6.7000 -2.2149 -1.7241 11 1 6.5297 -1.0704 -3.8553 12 1 6.5268 0.2029 -1.7915 13 8 2.0063 -0.6736 1.1668 14 6 2.1053 0.0608 2.3060 15 6 2.6639 -0.4971 3.4469 16 6 2.7628 0.2528 4.6012 17 6 2.3061 1.5606 4.6262 18 6 1.7490 2.1187 3.4905 19 6 1.6540 1.3709 2.3296 20 6 1.3309 3.5457 3.7738 21 6 2.0852 3.9394 5.0615 22 6 2.3006 2.5751 5.7498 23 1 3.2556 2.5627 6.2753 24 7 1.2007 2.2964 6.6829 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.7516 -1.7715 -1.2056 29 1 1.6053 -0.2617 -2.1370 30 1 4.0608 -2.2452 -4.0346 31 1 3.0208 -1.5163 3.4317 32 1 3.1981 -0.1818 5.4890 33 1 1.2226 1.8081 1.4412 34 1 1.6238 4.1963 2.9499 35 1 0.2542 3.5994 3.9349 36 1 3.0402 4.4079 4.8233 37 1 1.4765 4.5979 5.6812 38 1 1.3068 1.3863 7.1054 39 1 1.1325 3.0161 7.3867 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829189433.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:59 Heat of formation + Delta-G solvation = -46.797162 kcal Electronic energy + Delta-G solvation = -19362.367156 eV Core-core repulsion = 16461.401730 eV Total energy + Delta-G solvation = -2900.965427 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.49068 -39.82059 -36.64698 -35.29002 -33.69829 -33.18073 -31.01362 -29.45266 -29.30325 -26.60024 -25.33059 -24.14033 -22.02011 -21.71177 -21.03502 -18.71631 -18.50301 -17.27930 -17.01491 -16.54345 -16.39792 -16.02856 -15.60788 -15.13839 -14.85621 -14.52013 -14.45740 -14.09097 -13.76564 -13.65946 -13.35185 -13.16728 -12.76333 -12.70224 -12.60348 -12.44123 -12.32849 -12.20263 -11.99010 -11.65649 -11.56678 -11.27880 -11.05228 -10.60815 -9.72394 -9.57511 -8.88383 -8.23052 -6.32395 0.41637 0.50637 1.36533 1.38197 1.49040 2.38585 2.46012 2.79391 3.11347 3.45509 3.60651 3.84171 3.95870 4.07790 4.14445 4.19059 4.22779 4.38529 4.41706 4.46631 4.65139 4.71678 4.80345 4.81202 4.96899 5.02160 5.04274 5.14546 5.19251 5.27307 5.34341 5.37604 5.48144 5.51513 5.71489 5.73932 5.95248 6.16949 6.28730 6.67986 6.70795 6.79290 7.35152 8.88783 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.026566 B = 0.004686 C = 0.004430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.712730 B = 5973.484025 C = 6319.405219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.095 3.905 3 H 0.062 0.938 4 C 0.029 3.971 5 C -0.533 4.533 6 H 0.049 0.951 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.960 3.040 10 H -0.275 1.275 11 H -0.276 1.276 12 H -0.267 1.267 13 O -0.321 6.321 14 C 0.121 3.879 15 C -0.181 4.181 16 C -0.059 4.059 17 C -0.149 4.149 18 C -0.054 4.054 19 C -0.217 4.217 20 C -0.077 4.077 21 C -0.109 4.109 22 C 0.141 3.859 23 H 0.053 0.947 24 N -0.844 5.844 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.082 0.918 28 H -0.001 1.001 29 H 0.026 0.974 30 H 0.265 0.735 31 H 0.128 0.872 32 H 0.148 0.852 33 H 0.126 0.874 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.347 0.653 39 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.889 11.266 19.577 22.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.039 3.961 3 H 0.080 0.920 4 C -0.008 4.008 5 C -0.571 4.571 6 H 0.067 0.933 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.785 3.215 10 H -0.200 1.200 11 H -0.201 1.201 12 H -0.191 1.191 13 O -0.235 6.235 14 C 0.075 3.925 15 C -0.200 4.200 16 C -0.078 4.078 17 C -0.150 4.150 18 C -0.055 4.055 19 C -0.236 4.236 20 C -0.114 4.114 21 C -0.146 4.146 22 C 0.030 3.970 23 H 0.071 0.929 24 N -0.377 5.377 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.101 0.899 28 H 0.017 0.983 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.146 0.854 32 H 0.166 0.834 33 H 0.144 0.856 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.117 0.883 38 H 0.160 0.840 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -4.301 11.051 18.741 22.178 hybrid contribution 1.495 -0.533 -0.135 1.593 sum -2.806 10.518 18.606 21.557 Atomic orbital electron populations 1.22300 0.94214 1.02780 1.03052 1.22561 0.93918 0.95960 0.83640 0.91995 1.19114 0.95580 0.95085 0.90993 1.21436 0.93223 1.34566 1.07850 0.93314 1.25854 1.03544 0.94733 0.95168 1.70061 1.37556 1.36673 1.12749 0.85518 0.79639 0.78783 0.77567 1.20049 1.20087 1.19143 1.86189 1.81010 1.39256 1.17017 1.19375 0.94874 0.90962 0.87268 1.20517 1.05789 1.01760 0.91913 1.20588 0.97483 0.92712 0.96978 1.20627 1.02821 0.95059 0.96484 1.20677 0.95197 0.97281 0.92312 1.20850 1.08717 0.94055 0.99952 1.21075 1.01254 0.90314 0.98712 1.22364 1.01084 0.95630 0.95569 1.20592 0.93022 0.92355 0.91029 0.92899 1.58640 1.47093 1.08287 1.23694 0.92438 0.91393 0.89943 0.98299 0.95592 0.92602 0.85435 0.83401 0.85640 0.90343 0.89460 0.90005 0.88311 0.83997 0.83103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.92 9.17 71.98 0.66 -5.26 16 2 C 0.09 4.19 2.17 30.59 0.07 4.26 16 3 H 0.06 2.69 6.31 -2.39 -0.02 2.67 16 4 C 0.03 1.59 4.68 29.85 0.14 1.73 16 5 C -0.53 -31.53 8.88 25.60 0.23 -31.30 16 6 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 7 C 0.00 0.29 5.46 84.65 0.46 0.75 16 8 N -0.93 -57.15 13.29 21.45 0.28 -56.87 16 9 Si 0.96 45.73 29.54 68.60 2.03 47.76 16 10 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 12 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 13 O -0.32 -14.75 9.56 -92.43 -0.88 -15.64 16 14 C 0.12 4.75 6.59 22.48 0.15 4.90 16 15 C -0.18 -6.19 9.99 22.34 0.22 -5.97 16 16 C -0.06 -1.61 10.03 22.29 0.22 -1.38 16 17 C -0.15 -3.85 5.76 -19.57 -0.11 -3.96 16 18 C -0.05 -1.55 6.13 -19.60 -0.12 -1.67 16 19 C -0.22 -7.49 8.24 22.39 0.18 -7.31 16 20 C -0.08 -1.61 6.77 30.52 0.21 -1.41 16 21 C -0.11 -1.73 6.76 31.50 0.21 -1.52 16 22 C 0.14 2.53 3.99 44.83 0.18 2.71 16 23 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 24 N -0.84 -12.72 9.27 -168.99 -1.57 -14.28 16 25 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.07 2.15 6.90 -2.39 -0.02 2.13 16 27 H 0.08 2.64 8.14 -2.38 -0.02 2.62 16 28 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 29 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 31 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 32 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 33 H 0.13 4.24 5.42 -2.91 -0.02 4.22 16 34 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.09 1.76 8.14 -2.39 -0.02 1.75 16 36 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.10 1.17 8.03 -2.38 -0.02 1.15 16 38 H 0.35 4.77 9.06 -89.70 -0.81 3.96 16 39 H 0.35 3.52 8.98 -89.69 -0.81 2.72 16 Total: -1.00 -69.38 319.59 2.00 -67.38 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -0.56 Total: 17.08 kcal Atomic # 6 Polarization: -48.12 SS G_CDS: 2.70 Total: -45.42 kcal Atomic # 7 Polarization: -69.87 SS G_CDS: -1.28 Total: -71.15 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.88 Total: -15.64 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -69.38 2.00 -67.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829189433.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.581 kcal (2) G-P(sol) polarization free energy of solvation -69.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds