Wall clock time and date at job start Mon Mar 30 2020 06:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38308 * 119.96472 * 2 1 4 4 C 1.38265 * 120.14318 * 180.02562 * 3 2 1 5 5 C 1.38135 * 120.06901 * 0.27437 * 4 3 2 6 6 C 1.38859 * 119.92821 * 359.49511 * 5 4 3 7 7 N 1.39881 * 120.07248 * 180.25064 * 6 5 4 8 8 C 1.37657 * 119.99775 * 33.31042 * 7 6 5 9 9 N 1.30337 * 119.99719 * 5.59388 * 8 7 6 10 10 N 1.37505 * 119.99744 * 185.59467 * 8 7 6 11 11 C 1.46500 * 119.99856 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47482 * 180.02562 * 11 10 8 13 13 C 1.52995 * 109.47539 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47114 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00289 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99769 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00098 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 120.00098 * 359.97438 * 16 14 13 19 19 H 1.48496 * 109.46822 * 90.00260 * 18 16 14 20 20 H 1.48500 * 109.47166 * 210.00273 * 18 16 14 21 21 H 1.48503 * 109.47037 * 330.00516 * 18 16 14 22 22 C 1.38089 * 119.96029 * 180.02562 * 2 1 3 23 23 H 1.08999 * 109.47494 * 89.99673 * 1 2 3 24 24 H 1.09004 * 109.47302 * 210.00423 * 1 2 3 25 25 H 1.09004 * 109.47074 * 329.99409 * 1 2 3 26 26 H 1.07997 * 119.92890 * 0.02562 * 3 2 1 27 27 H 1.07994 * 119.96493 * 180.02562 * 4 3 2 28 28 H 1.08001 * 120.03429 * 179.75017 * 5 4 3 29 29 H 0.97002 * 120.00232 * 213.30417 * 7 6 5 30 30 H 0.96999 * 119.99515 * 179.97438 * 9 8 7 31 31 H 0.96995 * 120.00045 * 0.02562 * 10 8 7 32 32 H 1.09007 * 109.46792 * 300.00253 * 11 10 8 33 33 H 1.09001 * 109.47570 * 59.99596 * 11 10 8 34 34 H 1.09006 * 109.46625 * 300.00102 * 12 11 10 35 35 H 1.09001 * 109.47314 * 59.99113 * 12 11 10 36 36 H 1.09007 * 109.46873 * 300.00012 * 13 12 11 37 37 H 1.09003 * 109.47068 * 59.99996 * 13 12 11 38 38 H 0.96998 * 120.00528 * 179.97438 * 17 16 14 39 39 H 1.07991 * 120.04025 * 359.94787 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2025 -0.0005 5 6 4.2762 0.0092 -0.0068 6 6 3.5857 -1.1954 -0.0020 7 7 4.2873 -2.4056 -0.0030 8 6 5.4972 -2.5002 0.6468 9 7 5.9374 -1.4975 1.3537 10 7 6.2412 -3.6525 0.5500 11 6 7.5285 -3.7534 1.2420 12 6 8.1465 -5.1267 0.9719 13 6 9.4912 -5.2319 1.6940 14 6 10.0996 -6.5849 1.4283 15 1 9.5790 -7.2985 0.8070 16 6 11.3204 -6.9120 1.9795 17 7 11.8511 -8.0928 1.7481 18 14 12.2206 -5.6779 3.0548 19 1 11.8114 -5.8636 4.4701 20 1 13.6852 -5.8892 2.9311 21 1 11.8805 -4.2999 2.6179 22 6 2.1966 -1.1964 -0.0005 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.6560 2.1325 0.0004 27 1 4.1169 2.1398 -0.0001 28 1 5.3562 0.0133 -0.0113 29 1 3.9213 -3.1781 -0.4614 30 1 6.7897 -1.5644 1.8118 31 1 5.9137 -4.3985 0.0237 32 1 8.1992 -2.9754 0.8770 33 1 7.3758 -3.6278 2.3139 34 1 7.4760 -5.9049 1.3365 35 1 8.2993 -5.2519 -0.1001 36 1 10.1615 -4.4537 1.3289 37 1 9.3387 -5.1066 2.7660 38 1 12.7101 -8.3229 2.1355 39 1 1.6566 -2.1316 -0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849003212.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:10 Heat of formation + Delta-G solvation = 27.020363 kcal Electronic energy + Delta-G solvation = -18170.586165 eV Core-core repulsion = 15305.114458 eV Total energy + Delta-G solvation = -2865.471708 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.82699 -39.21424 -36.83992 -35.29310 -33.75765 -33.15971 -31.97598 -30.43845 -28.59712 -27.54951 -24.91934 -23.21684 -22.74954 -22.08123 -20.86242 -19.10540 -18.95715 -17.80274 -16.98963 -16.58515 -16.51221 -16.27322 -15.87303 -15.23175 -14.82582 -14.70157 -14.59622 -14.41961 -13.86194 -13.81065 -13.59461 -12.93397 -12.87307 -12.74644 -12.54747 -12.31544 -11.90777 -11.85618 -11.75562 -11.60376 -11.35714 -10.77939 -10.71978 -10.37132 -9.51308 -9.29429 -8.63465 -8.30823 -6.35332 0.52496 0.60521 1.36519 1.38124 1.49582 1.67666 2.01911 2.35171 2.97963 3.03208 3.04954 3.99201 4.06064 4.11701 4.14718 4.33129 4.42527 4.46620 4.57910 4.72501 4.78240 4.82707 4.84306 4.92683 4.99657 5.06939 5.18062 5.32050 5.40057 5.52765 5.53170 5.54605 5.63782 5.71412 5.81165 6.02052 6.17912 6.25503 6.48670 6.73067 6.98708 7.29566 7.72168 8.85689 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.053939 B = 0.002814 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.985028 B = 9947.968872 C =10315.768560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.076 4.076 3 C -0.152 4.152 4 C -0.109 4.109 5 C -0.138 4.138 6 C 0.171 3.829 7 N -0.659 5.659 8 C 0.627 3.373 9 N -0.837 5.837 10 N -0.760 5.760 11 C 0.140 3.860 12 C -0.097 4.097 13 C -0.011 4.011 14 C -0.533 4.533 15 H 0.034 0.966 16 C 0.002 3.998 17 N -0.951 5.951 18 Si 0.950 3.050 19 H -0.267 1.267 20 H -0.286 1.286 21 H -0.244 1.244 22 C -0.163 4.163 23 H 0.080 0.920 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.139 0.861 27 H 0.132 0.868 28 H 0.122 0.878 29 H 0.423 0.577 30 H 0.339 0.661 31 H 0.401 0.599 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.023 0.977 37 H 0.022 0.978 38 H 0.266 0.734 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.176 17.678 -4.446 28.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.077 4.077 3 C -0.170 4.170 4 C -0.128 4.128 5 C -0.159 4.159 6 C 0.075 3.925 7 N -0.294 5.294 8 C 0.260 3.740 9 N -0.486 5.486 10 N -0.405 5.405 11 C 0.015 3.985 12 C -0.135 4.135 13 C -0.049 4.049 14 C -0.571 4.571 15 H 0.052 0.948 16 C -0.195 4.195 17 N -0.592 5.592 18 Si 0.774 3.226 19 H -0.192 1.192 20 H -0.212 1.212 21 H -0.167 1.167 22 C -0.185 4.185 23 H 0.099 0.901 24 H 0.089 0.911 25 H 0.094 0.906 26 H 0.157 0.843 27 H 0.150 0.850 28 H 0.140 0.860 29 H 0.262 0.738 30 H 0.156 0.844 31 H 0.237 0.763 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.042 0.958 37 H 0.040 0.960 38 H 0.075 0.925 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -22.249 18.591 -4.082 29.280 hybrid contribution 1.545 -1.630 0.151 2.251 sum -20.705 16.960 -3.930 27.052 Atomic orbital electron populations 1.20809 0.89204 1.03502 1.03123 1.19987 0.97269 0.92229 0.98172 1.21229 0.93974 0.98389 1.03454 1.21220 0.94745 0.97737 0.99071 1.21227 1.00861 0.91689 1.02152 1.17629 0.90745 0.85012 0.99066 1.41250 1.18246 1.12947 1.56978 1.18845 0.84369 0.83240 0.87588 1.69781 1.25078 1.28109 1.25588 1.45401 1.21568 1.16429 1.57085 1.21216 0.82913 0.98128 0.96213 1.21404 0.96625 0.94727 1.00764 1.19459 0.94008 0.95099 0.96302 1.21468 1.04484 1.00424 1.30687 0.94762 1.26037 0.98390 0.97207 0.97826 1.70061 1.19190 1.23005 1.46937 0.85656 0.77269 0.80488 0.79232 1.19247 1.21193 1.16727 1.20907 0.91434 0.99353 1.06775 0.90147 0.91065 0.90595 0.84347 0.84987 0.85979 0.73813 0.84429 0.76343 0.92265 0.92297 0.92144 0.92149 0.95834 0.95989 0.92510 0.84494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.01 71.23 0.71 -0.46 16 2 C -0.08 -1.29 5.88 -19.88 -0.12 -1.41 16 3 C -0.15 -2.68 9.70 22.29 0.22 -2.46 16 4 C -0.11 -2.28 10.04 22.25 0.22 -2.06 16 5 C -0.14 -3.47 8.58 22.39 0.19 -3.28 16 6 C 0.17 3.94 6.29 38.17 0.24 4.18 16 7 N -0.66 -13.97 5.46 -189.17 -1.03 -15.00 16 8 C 0.63 16.26 8.45 260.44 2.20 18.46 16 9 N -0.84 -24.90 10.77 -58.41 -0.63 -25.53 16 10 N -0.76 -18.38 5.67 -349.24 -1.98 -20.36 16 11 C 0.14 3.98 5.02 86.38 0.43 4.41 16 12 C -0.10 -3.38 5.27 30.59 0.16 -3.22 16 13 C -0.01 -0.47 4.04 29.85 0.12 -0.35 16 14 C -0.53 -29.92 9.66 25.60 0.25 -29.67 16 15 H 0.03 2.11 7.99 -2.91 -0.02 2.09 16 16 C 0.00 0.13 5.47 84.66 0.46 0.59 16 17 N -0.95 -59.23 13.96 21.45 0.30 -58.93 16 18 Si 0.95 43.60 27.47 68.60 1.88 45.48 16 19 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 20 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 21 H -0.24 -10.28 6.54 99.48 0.65 -9.63 16 22 C -0.16 -3.08 9.62 22.40 0.22 -2.86 16 23 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.07 0.68 8.08 -2.38 -0.02 0.66 16 25 H 0.08 0.67 8.09 -2.38 -0.02 0.65 16 26 H 0.14 1.76 8.06 -2.91 -0.02 1.73 16 27 H 0.13 2.28 8.06 -2.91 -0.02 2.26 16 28 H 0.12 3.51 6.29 -2.91 -0.02 3.49 16 29 H 0.42 6.32 8.92 -92.71 -0.83 5.49 16 30 H 0.34 10.06 7.15 -92.71 -0.66 9.40 16 31 H 0.40 8.11 8.58 -92.71 -0.80 7.31 16 32 H 0.06 1.70 7.97 -2.38 -0.02 1.68 16 33 H 0.06 1.70 7.97 -2.39 -0.02 1.68 16 34 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 35 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.02 1.02 7.20 -2.38 -0.02 1.00 16 37 H 0.02 0.94 7.57 -2.39 -0.02 0.92 16 38 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 39 H 0.14 1.98 8.06 -2.92 -0.02 1.96 16 Total: -1.00 -68.21 324.80 2.58 -65.63 By element: Atomic # 1 Polarization: 28.11 SS G_CDS: -1.27 Total: 26.83 kcal Atomic # 6 Polarization: -23.43 SS G_CDS: 5.31 Total: -18.12 kcal Atomic # 7 Polarization: -116.49 SS G_CDS: -3.34 Total: -119.83 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.88 Total: 45.48 kcal Total: -68.21 2.58 -65.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849003212.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.652 kcal (2) G-P(sol) polarization free energy of solvation -68.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds