Wall clock time and date at job start Mon Mar 30 2020 06:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47311 * 2 1 4 4 N 1.46897 * 109.47443 * 120.00249 * 2 1 3 5 5 C 1.46894 * 111.00032 * 275.00294 * 4 2 1 6 6 C 1.50700 * 109.47483 * 179.97438 * 5 4 2 7 7 H 1.08009 * 119.99745 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00488 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99764 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00086 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47060 * 60.00141 * 10 8 6 12 12 H 1.48499 * 109.47092 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47145 * 300.00253 * 10 8 6 14 14 C 1.50699 * 109.47067 * 240.00200 * 2 1 3 15 15 C 1.38291 * 120.01136 * 279.97552 * 14 2 1 16 16 C 1.37966 * 119.96195 * 180.11715 * 15 14 2 17 17 C 1.39154 * 120.21518 * 359.97438 * 16 15 14 18 18 C 1.38382 * 119.69009 * 359.58441 * 17 16 15 19 19 C 1.38112 * 120.00741 * 100.00016 * 14 2 1 20 20 C 1.50766 * 121.39770 * 180.20349 * 18 17 16 21 21 C 1.53069 * 109.74292 * 342.52666 * 20 18 17 22 22 C 1.53401 * 108.29992 * 48.02896 * 21 20 18 23 23 O 1.35840 * 118.50443 * 179.68373 * 17 16 15 24 24 H 1.09006 * 109.47082 * 299.99674 * 1 2 3 25 25 H 1.09002 * 109.47837 * 59.99557 * 1 2 3 26 26 H 1.09002 * 109.47311 * 180.02562 * 1 2 3 27 27 H 1.00901 * 110.99733 * 38.95103 * 4 2 1 28 28 H 1.09007 * 109.47090 * 299.99467 * 5 4 2 29 29 H 1.08998 * 109.47451 * 59.99707 * 5 4 2 30 30 H 0.97001 * 119.99924 * 180.02562 * 9 8 6 31 31 H 1.07998 * 120.01727 * 0.10205 * 15 14 2 32 32 H 1.07997 * 119.89731 * 179.97438 * 16 15 14 33 33 H 1.08002 * 119.83934 * 359.96820 * 19 14 2 34 34 H 1.09002 * 109.57934 * 222.33370 * 20 18 17 35 35 H 1.09004 * 109.22123 * 102.50392 * 20 18 17 36 36 H 1.08995 * 109.69912 * 288.32483 * 21 20 18 37 37 H 1.09002 * 109.72715 * 167.74580 * 21 20 18 38 38 H 1.09003 * 109.68177 * 175.59404 * 22 21 20 39 39 H 1.09004 * 109.71222 * 55.05694 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0824 0.2225 2.3468 6 6 2.5874 -0.5219 3.5560 7 1 2.8371 -1.5699 3.4795 8 6 2.7315 0.1350 4.7595 9 7 2.4279 1.4113 4.8525 10 14 3.3581 -0.7876 6.2581 11 1 4.7140 -1.3243 5.9777 12 1 3.4214 0.1374 7.4181 13 1 2.4364 -1.9094 6.5698 14 6 2.0323 -0.7104 -1.2305 15 6 2.0672 -2.0924 -1.2655 16 6 2.5296 -2.7416 -2.3916 17 6 2.9609 -2.0103 -3.4941 18 6 2.9162 -0.6276 -3.4596 19 6 2.4583 0.0187 -2.3234 20 6 3.3695 0.2025 -4.6336 21 6 4.2305 -0.6507 -5.5684 22 6 3.5008 -1.9765 -5.8192 23 8 3.4154 -2.6850 -4.5820 24 1 -0.3633 0.5138 0.8901 25 1 -0.3635 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.4495 -1.4979 1.4099 28 1 2.7589 1.0461 2.1182 29 1 1.0871 0.6162 2.5525 30 1 2.5296 1.8736 5.6992 31 1 1.7331 -2.6631 -0.4117 32 1 2.5568 -3.8210 -2.4177 33 1 2.4299 1.0979 -2.2936 34 1 3.9528 1.0515 -4.2772 35 1 2.4958 0.5652 -5.1753 36 1 5.1964 -0.8454 -5.1025 37 1 4.3771 -0.1275 -6.5133 38 1 4.0572 -2.5703 -6.5445 39 1 2.4983 -1.7783 -6.1988 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852783246.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:22 Heat of formation + Delta-G solvation = -29.434775 kcal Electronic energy + Delta-G solvation = -19086.503215 eV Core-core repulsion = 16186.290678 eV Total energy + Delta-G solvation = -2900.212537 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.57757 -38.10276 -35.61911 -34.28294 -32.79811 -30.62220 -30.34786 -28.55803 -26.05765 -25.56289 -23.93619 -22.64237 -21.69731 -21.09914 -19.14112 -17.63448 -16.62749 -16.44126 -15.65914 -15.07653 -14.51473 -14.43662 -14.24212 -13.96292 -13.72001 -13.49572 -13.16167 -12.97043 -12.72373 -12.43071 -12.12536 -11.81557 -11.57533 -11.27087 -11.22795 -10.92793 -10.85579 -10.68373 -10.62543 -10.44121 -10.30503 -9.85679 -9.18710 -8.56361 -8.47118 -7.80708 -7.26461 -6.01826 -4.03582 1.56186 1.66193 3.32743 3.35003 3.38660 3.42126 3.94531 4.44226 4.51370 4.58532 4.67535 4.91034 5.05978 5.17747 5.25708 5.33692 5.34403 5.42261 5.45254 5.59219 5.61752 5.73279 5.77872 5.79727 5.88030 6.03705 6.10935 6.22039 6.35327 6.43397 6.54354 6.68407 6.99618 7.03075 7.27573 7.44516 7.56775 7.80230 8.14392 8.40505 8.62441 9.05408 9.61202 11.09199 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.034156 B = 0.003801 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.581008 B = 7365.066203 C = 7536.603888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.120 3.880 3 H 0.078 0.922 4 N -0.681 5.681 5 C 0.195 3.805 6 C -0.514 4.514 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.899 3.101 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.277 1.277 14 C -0.079 4.079 15 C -0.064 4.064 16 C -0.150 4.150 17 C 0.115 3.885 18 C -0.163 4.163 19 C -0.085 4.085 20 C -0.075 4.075 21 C -0.159 4.159 22 C 0.062 3.938 23 O -0.320 6.320 24 H 0.061 0.939 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.329 0.671 28 H 0.027 0.973 29 H -0.012 1.012 30 H 0.262 0.738 31 H 0.129 0.871 32 H 0.125 0.875 33 H 0.120 0.880 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.871 -3.776 -20.770 21.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.009 3.991 3 H 0.097 0.903 4 N -0.311 5.311 5 C 0.069 3.931 6 C -0.553 4.553 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.538 5.538 10 Si 0.727 3.273 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.080 4.080 15 C -0.082 4.082 16 C -0.168 4.168 17 C 0.071 3.929 18 C -0.164 4.164 19 C -0.104 4.104 20 C -0.112 4.112 21 C -0.197 4.197 22 C -0.013 4.013 23 O -0.235 6.235 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.146 0.854 28 H 0.045 0.955 29 H 0.006 0.994 30 H 0.071 0.929 31 H 0.147 0.853 32 H 0.143 0.857 33 H 0.138 0.862 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.120 0.880 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.141 -3.721 -20.793 21.124 hybrid contribution -0.565 0.010 1.029 1.174 sum -0.706 -3.711 -19.764 20.122 Atomic orbital electron populations 1.22469 0.97230 1.01754 1.01757 1.20393 0.91942 0.97375 0.89378 0.90333 1.60774 1.55288 1.10440 1.04548 1.19576 0.95300 0.91785 0.86488 1.21157 1.43599 0.96924 0.93599 0.92020 1.24979 0.95639 0.94924 0.98991 1.69952 1.48871 1.08991 1.26005 0.86547 0.79505 0.79412 0.81851 1.20151 1.21374 1.20272 1.19890 0.99364 0.93774 0.95010 1.20754 0.97040 0.94116 0.96303 1.20553 1.03572 0.99858 0.92844 1.18612 0.96679 0.89961 0.87648 1.19649 1.06697 0.92440 0.97643 1.20735 0.98223 0.99479 0.91964 1.20423 0.99418 0.97540 0.93865 1.22222 1.00022 0.96736 1.00724 1.22885 1.00467 0.93462 0.84494 1.85971 1.81228 1.39752 1.16521 0.92030 0.93007 0.92773 0.85412 0.95483 0.99396 0.92884 0.85305 0.85704 0.86201 0.90154 0.90879 0.90450 0.90078 0.87959 0.92149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.72 9.14 37.15 0.34 -2.39 16 2 C 0.12 2.14 2.79 -68.87 -0.19 1.95 16 3 H 0.08 1.47 7.66 -51.93 -0.40 1.07 16 4 N -0.68 -14.51 5.69 -109.23 -0.62 -15.13 16 5 C 0.19 5.09 5.24 -4.98 -0.03 5.06 16 6 C -0.51 -14.62 9.32 -34.44 -0.32 -14.94 16 7 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -26.92 13.29 55.43 0.74 -26.19 16 10 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 14 C -0.08 -1.29 4.95 -104.65 -0.52 -1.81 16 15 C -0.06 -1.00 9.32 -39.66 -0.37 -1.36 16 16 C -0.15 -2.20 9.94 -39.34 -0.39 -2.59 16 17 C 0.12 1.67 6.47 -39.19 -0.25 1.41 16 18 C -0.16 -2.23 5.75 -104.44 -0.60 -2.83 16 19 C -0.09 -1.26 9.29 -39.53 -0.37 -1.62 16 20 C -0.08 -0.77 5.86 -27.82 -0.16 -0.93 16 21 C -0.16 -1.38 6.20 -26.49 -0.16 -1.54 16 22 C 0.06 0.57 7.02 37.37 0.26 0.83 16 23 O -0.32 -4.22 10.27 -19.24 -0.20 -4.42 16 24 H 0.06 1.05 7.45 -51.93 -0.39 0.66 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.80 8.13 -51.93 -0.42 0.38 16 27 H 0.33 6.65 7.81 -39.29 -0.31 6.34 16 28 H 0.03 0.77 8.06 -51.93 -0.42 0.35 16 29 H -0.01 -0.32 7.44 -51.93 -0.39 -0.71 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.13 1.94 7.25 -52.49 -0.38 1.56 16 32 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 33 H 0.12 1.58 8.03 -52.49 -0.42 1.16 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 319.85 15.07 4.82 4.82 Total: -1.00 -31.08 319.85 -9.19 -40.27 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -6.05 Total: 3.07 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: -2.86 Total: -19.25 kcal Atomic # 7 Polarization: -41.43 SS G_CDS: 0.11 Total: -41.32 kcal Atomic # 8 Polarization: -4.22 SS G_CDS: -0.20 Total: -4.42 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.08 -9.19 -40.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852783246.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.839 kcal (2) G-P(sol) polarization free energy of solvation -31.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds