Wall clock time and date at job start Mon Mar 30 2020 06:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47311 * 2 1 4 4 N 1.46897 * 109.47443 * 120.00249 * 2 1 3 5 5 C 1.46894 * 111.00032 * 275.00294 * 4 2 1 6 6 C 1.50700 * 109.47483 * 179.97438 * 5 4 2 7 7 H 1.08009 * 119.99745 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00488 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99764 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00086 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47060 * 60.00141 * 10 8 6 12 12 H 1.48499 * 109.47092 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47145 * 300.00253 * 10 8 6 14 14 C 1.50699 * 109.47067 * 240.00200 * 2 1 3 15 15 C 1.38291 * 120.01136 * 279.97552 * 14 2 1 16 16 C 1.37966 * 119.96195 * 180.11715 * 15 14 2 17 17 C 1.39154 * 120.21518 * 359.97438 * 16 15 14 18 18 C 1.38382 * 119.69009 * 359.58441 * 17 16 15 19 19 C 1.38112 * 120.00741 * 100.00016 * 14 2 1 20 20 C 1.50766 * 121.39770 * 180.20349 * 18 17 16 21 21 C 1.53069 * 109.74292 * 342.52666 * 20 18 17 22 22 C 1.53401 * 108.29992 * 48.02896 * 21 20 18 23 23 O 1.35840 * 118.50443 * 179.68373 * 17 16 15 24 24 H 1.09006 * 109.47082 * 299.99674 * 1 2 3 25 25 H 1.09002 * 109.47837 * 59.99557 * 1 2 3 26 26 H 1.09002 * 109.47311 * 180.02562 * 1 2 3 27 27 H 1.00901 * 110.99733 * 38.95103 * 4 2 1 28 28 H 1.09007 * 109.47090 * 299.99467 * 5 4 2 29 29 H 1.08998 * 109.47451 * 59.99707 * 5 4 2 30 30 H 0.97001 * 119.99924 * 180.02562 * 9 8 6 31 31 H 1.07998 * 120.01727 * 0.10205 * 15 14 2 32 32 H 1.07997 * 119.89731 * 179.97438 * 16 15 14 33 33 H 1.08002 * 119.83934 * 359.96820 * 19 14 2 34 34 H 1.09002 * 109.57934 * 222.33370 * 20 18 17 35 35 H 1.09004 * 109.22123 * 102.50392 * 20 18 17 36 36 H 1.08995 * 109.69912 * 288.32483 * 21 20 18 37 37 H 1.09002 * 109.72715 * 167.74580 * 21 20 18 38 38 H 1.09003 * 109.68177 * 175.59404 * 22 21 20 39 39 H 1.09004 * 109.71222 * 55.05694 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0824 0.2225 2.3468 6 6 2.5874 -0.5219 3.5560 7 1 2.8371 -1.5699 3.4795 8 6 2.7315 0.1350 4.7595 9 7 2.4279 1.4113 4.8525 10 14 3.3581 -0.7876 6.2581 11 1 4.7140 -1.3243 5.9777 12 1 3.4214 0.1374 7.4181 13 1 2.4364 -1.9094 6.5698 14 6 2.0323 -0.7104 -1.2305 15 6 2.0672 -2.0924 -1.2655 16 6 2.5296 -2.7416 -2.3916 17 6 2.9609 -2.0103 -3.4941 18 6 2.9162 -0.6276 -3.4596 19 6 2.4583 0.0187 -2.3234 20 6 3.3695 0.2025 -4.6336 21 6 4.2305 -0.6507 -5.5684 22 6 3.5008 -1.9765 -5.8192 23 8 3.4154 -2.6850 -4.5820 24 1 -0.3633 0.5138 0.8901 25 1 -0.3635 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.4495 -1.4979 1.4099 28 1 2.7589 1.0461 2.1182 29 1 1.0871 0.6162 2.5525 30 1 2.5296 1.8736 5.6992 31 1 1.7331 -2.6631 -0.4117 32 1 2.5568 -3.8210 -2.4177 33 1 2.4299 1.0979 -2.2936 34 1 3.9528 1.0515 -4.2772 35 1 2.4958 0.5652 -5.1753 36 1 5.1964 -0.8454 -5.1025 37 1 4.3771 -0.1275 -6.5133 38 1 4.0572 -2.5703 -6.5445 39 1 2.4983 -1.7783 -6.1988 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852783246.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:21 Heat of formation + Delta-G solvation = -48.233382 kcal Electronic energy + Delta-G solvation = -19087.318384 eV Core-core repulsion = 16186.290678 eV Total energy + Delta-G solvation = -2901.027706 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.57871 -39.31295 -37.11226 -35.18439 -34.80326 -32.20429 -31.34953 -29.88486 -27.93545 -26.53846 -25.04953 -24.14157 -23.13336 -22.46507 -20.21740 -18.67107 -18.57290 -17.49825 -16.97321 -16.53216 -16.10423 -15.56765 -15.43783 -15.33154 -14.94069 -14.64115 -14.35089 -14.07238 -14.01664 -13.91904 -13.56004 -13.34687 -13.08023 -12.79865 -12.61724 -12.50109 -12.12087 -12.07712 -11.87189 -11.76164 -11.59775 -11.28839 -11.21508 -10.65380 -9.66735 -9.09806 -8.89385 -8.21372 -6.32365 0.44293 0.50319 1.41403 1.44981 1.52868 2.40568 2.43386 2.80646 3.11767 3.53706 3.77631 3.84747 3.87349 3.99734 4.03840 4.19359 4.33423 4.37197 4.50739 4.53924 4.60705 4.67710 4.76100 4.82210 4.88654 4.96319 5.05232 5.10651 5.16560 5.20567 5.22265 5.29754 5.41786 5.53489 5.62313 5.79335 5.90341 6.04668 6.48172 6.57427 6.74359 6.91076 7.38391 8.89762 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.034156 B = 0.003801 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.581008 B = 7365.066203 C = 7536.603888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.122 3.878 3 H 0.063 0.937 4 N -0.680 5.680 5 C 0.212 3.788 6 C -0.536 4.536 7 H 0.063 0.937 8 C 0.002 3.998 9 N -0.934 5.934 10 Si 0.972 3.028 11 H -0.270 1.270 12 H -0.282 1.282 13 H -0.265 1.265 14 C -0.097 4.097 15 C -0.075 4.075 16 C -0.159 4.159 17 C 0.110 3.890 18 C -0.164 4.164 19 C -0.093 4.093 20 C -0.078 4.078 21 C -0.155 4.155 22 C 0.052 3.948 23 O -0.334 6.334 24 H 0.042 0.958 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.335 0.665 28 H -0.004 1.004 29 H -0.033 1.033 30 H 0.265 0.735 31 H 0.128 0.872 32 H 0.137 0.863 33 H 0.131 0.869 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.065 0.935 37 H 0.113 0.887 38 H 0.129 0.871 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.426 -4.621 -22.353 22.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.012 3.988 3 H 0.081 0.919 4 N -0.311 5.311 5 C 0.084 3.916 6 C -0.575 4.575 7 H 0.082 0.918 8 C -0.196 4.196 9 N -0.574 5.574 10 Si 0.796 3.204 11 H -0.195 1.195 12 H -0.208 1.208 13 H -0.190 1.190 14 C -0.098 4.098 15 C -0.093 4.093 16 C -0.177 4.177 17 C 0.065 3.935 18 C -0.165 4.165 19 C -0.111 4.111 20 C -0.115 4.115 21 C -0.192 4.192 22 C -0.022 4.022 23 O -0.249 6.249 24 H 0.061 0.939 25 H 0.092 0.908 26 H 0.083 0.917 27 H 0.153 0.847 28 H 0.014 0.986 29 H -0.015 1.015 30 H 0.074 0.926 31 H 0.146 0.854 32 H 0.155 0.845 33 H 0.149 0.851 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.084 0.916 37 H 0.131 0.869 38 H 0.146 0.854 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.297 -4.578 -22.411 22.876 hybrid contribution -0.688 0.280 1.367 1.555 sum -0.391 -4.298 -21.044 21.482 Atomic orbital electron populations 1.22352 0.95566 1.02487 1.01850 1.20379 0.93359 0.96451 0.88656 0.91883 1.60638 1.56393 1.10021 1.04013 1.19185 0.93100 0.91469 0.87825 1.21534 1.43944 0.97239 0.94749 0.91835 1.25930 0.95577 0.95785 1.02318 1.70082 1.49700 1.10635 1.26991 0.85402 0.79083 0.78256 0.77654 1.19514 1.20768 1.19013 1.19744 1.01164 0.94131 0.94742 1.20774 0.97786 0.93923 0.96830 1.20726 1.03532 1.00624 0.92828 1.18778 0.96153 0.90399 0.88122 1.20015 1.05506 0.92633 0.98368 1.20917 0.98066 1.00113 0.92002 1.20551 1.00504 0.97426 0.93051 1.22228 0.98858 0.96452 1.01684 1.23267 1.01721 0.94064 0.83193 1.85954 1.80849 1.40733 1.17376 0.93936 0.90768 0.91710 0.84678 0.98604 1.01535 0.92635 0.85442 0.84532 0.85115 0.89593 0.89132 0.91576 0.86898 0.85353 0.91070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.19 9.14 71.98 0.66 -4.53 16 2 C 0.12 4.45 2.79 44.17 0.12 4.57 16 3 H 0.06 2.46 7.66 -2.39 -0.02 2.45 16 4 N -0.68 -29.87 5.69 -499.49 -2.84 -32.71 16 5 C 0.21 11.51 5.24 85.56 0.45 11.96 16 6 C -0.54 -31.07 9.32 25.60 0.24 -30.83 16 7 H 0.06 3.57 7.81 -2.91 -0.02 3.55 16 8 C 0.00 0.12 5.46 84.65 0.46 0.58 16 9 N -0.93 -57.00 13.29 21.45 0.28 -56.71 16 10 Si 0.97 44.84 29.54 68.60 2.03 46.86 16 11 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 12 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 13 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 14 C -0.10 -3.15 4.95 -19.88 -0.10 -3.25 16 15 C -0.07 -2.33 9.32 22.22 0.21 -2.12 16 16 C -0.16 -4.57 9.94 22.43 0.22 -4.35 16 17 C 0.11 3.05 6.47 22.52 0.15 3.19 16 18 C -0.16 -4.24 5.75 -19.75 -0.11 -4.35 16 19 C -0.09 -2.66 9.29 22.30 0.21 -2.45 16 20 C -0.08 -1.40 5.86 29.89 0.18 -1.22 16 21 C -0.15 -2.19 6.20 30.75 0.19 -2.00 16 22 C 0.05 0.79 7.02 72.12 0.51 1.29 16 23 O -0.33 -8.17 10.27 -91.75 -0.94 -9.11 16 24 H 0.04 1.49 7.45 -2.38 -0.02 1.47 16 25 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.06 1.89 8.13 -2.39 -0.02 1.87 16 27 H 0.34 13.86 7.81 -89.69 -0.70 13.16 16 28 H 0.00 -0.25 8.06 -2.38 -0.02 -0.27 16 29 H -0.03 -1.90 7.44 -2.39 -0.02 -1.92 16 30 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 31 H 0.13 3.87 7.25 -2.91 -0.02 3.85 16 32 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 33 H 0.13 3.36 8.03 -2.91 -0.02 3.33 16 34 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 36 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 Total: -1.00 -67.53 319.85 2.23 -65.30 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: 0.33 Total: 19.87 kcal Atomic # 6 Polarization: -36.87 SS G_CDS: 3.37 Total: -33.50 kcal Atomic # 7 Polarization: -86.86 SS G_CDS: -2.56 Total: -89.42 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: -0.94 Total: -9.11 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -67.53 2.23 -65.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852783246.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.064 kcal (2) G-P(sol) polarization free energy of solvation -67.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds