Wall clock time and date at job start Mon Mar 30 2020 06:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47161 * 2 1 4 4 N 1.46901 * 109.47269 * 240.00137 * 2 1 3 5 5 C 1.46905 * 110.99870 * 84.99904 * 4 2 1 6 6 C 1.50697 * 109.47066 * 180.02562 * 5 4 2 7 7 H 1.08000 * 120.00144 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00103 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99826 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00043 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46802 * 60.00722 * 10 8 6 12 12 H 1.48498 * 109.46954 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47344 * 300.00519 * 10 8 6 14 14 C 1.50692 * 109.47298 * 120.00156 * 2 1 3 15 15 C 1.38294 * 120.01040 * 79.72709 * 14 2 1 16 16 C 1.37961 * 119.96359 * 179.80641 * 15 14 2 17 17 C 1.39154 * 120.21082 * 0.54124 * 16 15 14 18 18 C 1.38373 * 119.69732 * 359.56244 * 17 16 15 19 19 C 1.38107 * 120.01151 * 260.00319 * 14 2 1 20 20 C 1.50767 * 121.40422 * 180.54736 * 18 17 16 21 21 C 1.53064 * 109.68669 * 342.13201 * 20 18 17 22 22 C 1.53404 * 108.31725 * 48.16975 * 21 20 18 23 23 O 1.35843 * 118.49388 * 179.46581 * 17 16 15 24 24 H 1.09000 * 109.47161 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47343 * 299.99942 * 1 2 3 26 26 H 1.09004 * 109.47587 * 59.99932 * 1 2 3 27 27 H 1.00901 * 111.00067 * 208.95080 * 4 2 1 28 28 H 1.09001 * 109.46798 * 300.00327 * 5 4 2 29 29 H 1.08998 * 109.46961 * 60.00043 * 5 4 2 30 30 H 0.96997 * 120.00392 * 179.97438 * 9 8 6 31 31 H 1.08008 * 120.01508 * 0.05762 * 15 14 2 32 32 H 1.08002 * 119.89903 * 180.28367 * 16 15 14 33 33 H 1.08006 * 119.83948 * 0.04045 * 19 14 2 34 34 H 1.08997 * 109.43375 * 102.20086 * 20 18 17 35 35 H 1.09001 * 109.43156 * 222.06787 * 20 18 17 36 36 H 1.09003 * 109.69572 * 288.46386 * 21 20 18 37 37 H 1.08998 * 109.72885 * 167.89418 * 21 20 18 38 38 H 1.08999 * 109.69082 * 175.58321 * 22 21 20 39 39 H 1.09007 * 109.71540 * 55.03851 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 6 2.5873 -0.5216 -3.5560 7 1 2.8362 -1.5698 -3.4799 8 6 2.7305 0.1352 -4.7599 9 7 2.4269 1.4114 -4.8527 10 14 3.3570 -0.7873 -6.2584 11 1 2.4357 -1.9097 -6.5696 12 1 3.4203 0.1378 -7.4184 13 1 4.7133 -1.3232 -5.9786 14 6 2.0323 -0.7104 1.2304 15 6 2.0615 -2.0925 1.2676 16 6 2.5254 -2.7419 2.3930 17 6 2.9540 -2.0106 3.4966 18 6 2.9216 -0.6278 3.4573 19 6 2.4583 0.0185 2.3233 20 6 3.3881 0.2024 4.6261 21 6 3.4349 -0.6633 5.8876 22 6 4.1695 -1.9672 5.5504 23 8 3.3936 -2.6858 4.5903 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 2.9173 -1.1204 -1.0288 28 1 1.0870 0.6164 -2.5525 29 1 2.7588 1.0463 -2.1182 30 1 2.5279 1.8736 -5.6995 31 1 1.7252 -2.6632 0.4145 32 1 2.5520 -3.8212 2.4192 33 1 2.4297 1.0978 2.2938 34 1 4.3836 0.5944 4.4181 35 1 2.6975 1.0314 4.7806 36 1 2.4203 -0.8879 6.2169 37 1 3.9688 -0.1346 6.6771 38 1 4.2847 -2.5677 6.4528 39 1 5.1505 -1.7393 5.1333 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852783249.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:23 Heat of formation + Delta-G solvation = -29.595376 kcal Electronic energy + Delta-G solvation = -19093.448556 eV Core-core repulsion = 16193.229055 eV Total energy + Delta-G solvation = -2900.219501 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.65247 -38.15807 -35.50378 -34.33817 -32.78972 -30.63540 -30.41207 -28.61194 -26.20658 -25.59554 -23.91711 -22.70475 -21.75575 -20.79606 -19.10029 -17.68386 -16.72892 -16.47560 -15.71846 -15.03945 -14.64504 -14.50090 -14.45777 -13.98775 -13.69973 -13.40653 -13.14678 -13.04243 -12.71415 -12.31259 -12.00661 -11.61859 -11.51801 -11.42489 -11.28746 -11.09462 -10.89911 -10.66645 -10.60519 -10.40894 -10.23230 -9.81758 -9.16899 -8.63972 -8.46040 -7.89922 -7.29194 -6.01335 -4.03076 1.47999 1.55519 3.26668 3.35217 3.38783 3.42117 3.87103 4.43606 4.46592 4.53503 4.61959 4.84607 5.01223 5.15538 5.19377 5.27992 5.31797 5.34804 5.41698 5.53275 5.63930 5.71161 5.82279 5.87726 5.98041 6.01521 6.18954 6.27337 6.42862 6.46099 6.57975 6.75846 6.90298 6.96259 7.30504 7.44474 7.49570 7.81066 8.15527 8.42770 8.63257 9.06068 9.61650 11.09797 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.034392 B = 0.003812 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.951279 B = 7344.045555 C = 7563.930630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.123 3.877 3 H 0.041 0.959 4 N -0.682 5.682 5 C 0.194 3.806 6 C -0.514 4.514 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.899 3.101 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.277 1.277 14 C -0.103 4.103 15 C -0.066 4.066 16 C -0.150 4.150 17 C 0.119 3.881 18 C -0.164 4.164 19 C -0.083 4.083 20 C -0.076 4.076 21 C -0.159 4.159 22 C 0.061 3.939 23 O -0.320 6.320 24 H 0.057 0.943 25 H 0.044 0.956 26 H 0.059 0.941 27 H 0.330 0.670 28 H 0.029 0.971 29 H -0.014 1.014 30 H 0.262 0.738 31 H 0.140 0.860 32 H 0.127 0.873 33 H 0.121 0.879 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.103 0.897 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.508 -3.613 21.055 21.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.012 3.988 3 H 0.059 0.941 4 N -0.313 5.313 5 C 0.068 3.932 6 C -0.552 4.552 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.538 5.538 10 Si 0.727 3.273 11 H -0.201 1.201 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.104 4.104 15 C -0.084 4.084 16 C -0.168 4.168 17 C 0.074 3.926 18 C -0.165 4.165 19 C -0.102 4.102 20 C -0.113 4.113 21 C -0.196 4.196 22 C -0.014 4.014 23 O -0.234 6.234 24 H 0.077 0.923 25 H 0.063 0.937 26 H 0.078 0.922 27 H 0.148 0.852 28 H 0.047 0.953 29 H 0.003 0.997 30 H 0.071 0.929 31 H 0.158 0.842 32 H 0.145 0.855 33 H 0.139 0.861 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.121 0.879 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.848 -3.888 20.789 21.167 hybrid contribution 1.199 0.477 -0.605 1.425 sum 2.047 -3.411 20.184 20.572 Atomic orbital electron populations 1.21736 0.94461 1.01935 1.00647 1.20377 0.95636 0.95078 0.87676 0.94111 1.60822 1.32524 1.34580 1.03415 1.19597 0.96517 0.90206 0.86909 1.21154 1.43348 0.96718 0.94026 0.92006 1.24983 0.95677 0.94896 0.98992 1.69950 1.48880 1.09006 1.25983 0.86547 0.79358 0.79495 0.81918 1.20139 1.21378 1.20285 1.20062 1.00331 0.94051 0.95958 1.20952 0.96377 0.94062 0.97006 1.20613 1.04600 1.00036 0.91600 1.18657 0.97031 0.89991 0.86880 1.19669 1.06916 0.92510 0.97410 1.20795 0.97831 0.99550 0.91984 1.20431 1.01845 0.97384 0.91656 1.22219 1.02198 0.96876 0.98343 1.22909 0.93515 0.93434 0.91544 1.85979 1.67573 1.39064 1.30782 0.92345 0.93699 0.92156 0.85242 0.95251 0.99661 0.92886 0.84211 0.85503 0.86144 0.90685 0.90218 0.90540 0.90015 0.87867 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 9.39 37.15 0.35 -1.85 16 2 C 0.12 2.22 2.82 -68.87 -0.19 2.03 16 3 H 0.04 0.78 7.66 -51.93 -0.40 0.38 16 4 N -0.68 -14.65 5.69 -109.23 -0.62 -15.27 16 5 C 0.19 5.11 5.24 -4.97 -0.03 5.09 16 6 C -0.51 -14.64 9.32 -34.44 -0.32 -14.97 16 7 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 10 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 14 C -0.10 -1.64 4.71 -104.65 -0.49 -2.14 16 15 C -0.07 -1.00 9.01 -39.66 -0.36 -1.36 16 16 C -0.15 -2.13 9.94 -39.34 -0.39 -2.52 16 17 C 0.12 1.66 6.47 -39.19 -0.25 1.41 16 18 C -0.16 -2.17 5.75 -104.44 -0.60 -2.77 16 19 C -0.08 -1.19 9.29 -39.53 -0.37 -1.55 16 20 C -0.08 -0.75 5.86 -27.82 -0.16 -0.91 16 21 C -0.16 -1.29 6.19 -26.49 -0.16 -1.45 16 22 C 0.06 0.54 7.03 37.37 0.26 0.81 16 23 O -0.32 -4.07 10.27 -19.25 -0.20 -4.27 16 24 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 1.10 7.45 -51.93 -0.39 0.72 16 27 H 0.33 6.96 7.99 -39.29 -0.31 6.64 16 28 H 0.03 0.83 7.44 -51.93 -0.39 0.44 16 29 H -0.01 -0.40 8.05 -51.93 -0.42 -0.82 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.14 2.15 7.73 -52.48 -0.41 1.75 16 32 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 33 H 0.12 1.56 8.03 -52.48 -0.42 1.14 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 LS Contribution 320.23 15.07 4.83 4.83 Total: -1.00 -30.81 320.23 -9.17 -39.98 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -6.08 Total: 2.85 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: -2.82 Total: -18.67 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: 0.11 Total: -41.54 kcal Atomic # 8 Polarization: -4.07 SS G_CDS: -0.20 Total: -4.27 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.81 -9.17 -39.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852783249.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.388 kcal (2) G-P(sol) polarization free energy of solvation -30.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds