Wall clock time and date at job start Mon Mar 30 2020 06:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47161 * 2 1 4 4 N 1.46901 * 109.47269 * 240.00137 * 2 1 3 5 5 C 1.46905 * 110.99870 * 84.99904 * 4 2 1 6 6 C 1.50697 * 109.47066 * 180.02562 * 5 4 2 7 7 H 1.08000 * 120.00144 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00103 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99826 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00043 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46802 * 60.00722 * 10 8 6 12 12 H 1.48498 * 109.46954 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47344 * 300.00519 * 10 8 6 14 14 C 1.50692 * 109.47298 * 120.00156 * 2 1 3 15 15 C 1.38294 * 120.01040 * 79.72709 * 14 2 1 16 16 C 1.37961 * 119.96359 * 179.80641 * 15 14 2 17 17 C 1.39154 * 120.21082 * 0.54124 * 16 15 14 18 18 C 1.38373 * 119.69732 * 359.56244 * 17 16 15 19 19 C 1.38107 * 120.01151 * 260.00319 * 14 2 1 20 20 C 1.50767 * 121.40422 * 180.54736 * 18 17 16 21 21 C 1.53064 * 109.68669 * 342.13201 * 20 18 17 22 22 C 1.53404 * 108.31725 * 48.16975 * 21 20 18 23 23 O 1.35843 * 118.49388 * 179.46581 * 17 16 15 24 24 H 1.09000 * 109.47161 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47343 * 299.99942 * 1 2 3 26 26 H 1.09004 * 109.47587 * 59.99932 * 1 2 3 27 27 H 1.00901 * 111.00067 * 208.95080 * 4 2 1 28 28 H 1.09001 * 109.46798 * 300.00327 * 5 4 2 29 29 H 1.08998 * 109.46961 * 60.00043 * 5 4 2 30 30 H 0.96997 * 120.00392 * 179.97438 * 9 8 6 31 31 H 1.08008 * 120.01508 * 0.05762 * 15 14 2 32 32 H 1.08002 * 119.89903 * 180.28367 * 16 15 14 33 33 H 1.08006 * 119.83948 * 0.04045 * 19 14 2 34 34 H 1.08997 * 109.43375 * 102.20086 * 20 18 17 35 35 H 1.09001 * 109.43156 * 222.06787 * 20 18 17 36 36 H 1.09003 * 109.69572 * 288.46386 * 21 20 18 37 37 H 1.08998 * 109.72885 * 167.89418 * 21 20 18 38 38 H 1.08999 * 109.69082 * 175.58321 * 22 21 20 39 39 H 1.09007 * 109.71540 * 55.03851 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 6 2.5873 -0.5216 -3.5560 7 1 2.8362 -1.5698 -3.4799 8 6 2.7305 0.1352 -4.7599 9 7 2.4269 1.4114 -4.8527 10 14 3.3570 -0.7873 -6.2584 11 1 2.4357 -1.9097 -6.5696 12 1 3.4203 0.1378 -7.4184 13 1 4.7133 -1.3232 -5.9786 14 6 2.0323 -0.7104 1.2304 15 6 2.0615 -2.0925 1.2676 16 6 2.5254 -2.7419 2.3930 17 6 2.9540 -2.0106 3.4966 18 6 2.9216 -0.6278 3.4573 19 6 2.4583 0.0185 2.3233 20 6 3.3881 0.2024 4.6261 21 6 3.4349 -0.6633 5.8876 22 6 4.1695 -1.9672 5.5504 23 8 3.3936 -2.6858 4.5903 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 2.9173 -1.1204 -1.0288 28 1 1.0870 0.6164 -2.5525 29 1 2.7588 1.0463 -2.1182 30 1 2.5279 1.8736 -5.6995 31 1 1.7252 -2.6632 0.4145 32 1 2.5520 -3.8212 2.4192 33 1 2.4297 1.0978 2.2938 34 1 4.3836 0.5944 4.4181 35 1 2.6975 1.0314 4.7806 36 1 2.4203 -0.8879 6.2169 37 1 3.9688 -0.1346 6.6771 38 1 4.2847 -2.5677 6.4528 39 1 5.1505 -1.7393 5.1333 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852783249.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:23 Heat of formation + Delta-G solvation = -48.157704 kcal Electronic energy + Delta-G solvation = -19094.253479 eV Core-core repulsion = 16193.229055 eV Total energy + Delta-G solvation = -2901.024424 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.63325 -39.34926 -37.02587 -35.21353 -34.79313 -32.24639 -31.38961 -29.92065 -28.12067 -26.56305 -25.05164 -24.15362 -23.16393 -22.17790 -20.21086 -18.69006 -18.61617 -17.58289 -17.03209 -16.55970 -16.17147 -15.92363 -15.35971 -15.08175 -14.99334 -14.56304 -14.42640 -14.27877 -14.06129 -13.80786 -13.50024 -13.06158 -13.03378 -12.92716 -12.68444 -12.47055 -12.22200 -12.03038 -11.94194 -11.75568 -11.46861 -11.32889 -11.24502 -10.64826 -9.72007 -9.13989 -8.99966 -8.21819 -6.32916 0.38615 0.41843 1.41390 1.45083 1.53006 2.38594 2.40788 2.76712 3.11426 3.48742 3.73663 3.75236 3.85089 3.91191 3.99392 4.25038 4.33615 4.47063 4.52532 4.56266 4.60058 4.67334 4.73902 4.85575 4.94469 4.97896 5.03142 5.12502 5.15596 5.20006 5.21120 5.34467 5.36093 5.47562 5.59488 5.74407 5.85209 6.04860 6.46229 6.53221 6.72152 6.89087 7.37849 8.89639 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.034392 B = 0.003812 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.951279 B = 7344.045555 C = 7563.930630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.124 3.876 3 H 0.029 0.971 4 N -0.677 5.677 5 C 0.211 3.789 6 C -0.536 4.536 7 H 0.064 0.936 8 C 0.002 3.998 9 N -0.934 5.934 10 Si 0.973 3.027 11 H -0.268 1.268 12 H -0.282 1.282 13 H -0.267 1.267 14 C -0.119 4.119 15 C -0.074 4.074 16 C -0.156 4.156 17 C 0.116 3.884 18 C -0.164 4.164 19 C -0.088 4.088 20 C -0.080 4.080 21 C -0.153 4.153 22 C 0.050 3.950 23 O -0.332 6.332 24 H 0.060 0.940 25 H 0.070 0.930 26 H 0.038 0.962 27 H 0.333 0.667 28 H 0.004 0.996 29 H -0.042 1.042 30 H 0.265 0.735 31 H 0.132 0.868 32 H 0.139 0.861 33 H 0.131 0.869 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.112 0.888 38 H 0.131 0.869 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.415 -4.393 22.685 23.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.014 3.986 3 H 0.047 0.953 4 N -0.307 5.307 5 C 0.083 3.917 6 C -0.575 4.575 7 H 0.083 0.917 8 C -0.197 4.197 9 N -0.574 5.574 10 Si 0.797 3.203 11 H -0.193 1.193 12 H -0.208 1.208 13 H -0.192 1.192 14 C -0.119 4.119 15 C -0.092 4.092 16 C -0.175 4.175 17 C 0.071 3.929 18 C -0.165 4.165 19 C -0.106 4.106 20 C -0.116 4.116 21 C -0.190 4.190 22 C -0.024 4.024 23 O -0.247 6.247 24 H 0.079 0.921 25 H 0.089 0.911 26 H 0.057 0.943 27 H 0.150 0.850 28 H 0.022 0.978 29 H -0.025 1.025 30 H 0.074 0.926 31 H 0.150 0.850 32 H 0.157 0.843 33 H 0.149 0.851 34 H 0.103 0.897 35 H 0.109 0.891 36 H 0.090 0.910 37 H 0.130 0.870 38 H 0.148 0.852 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.755 -4.680 22.452 23.001 hybrid contribution 0.935 0.726 -0.965 1.527 sum 2.690 -3.954 21.487 22.013 Atomic orbital electron populations 1.21684 0.93558 1.02105 1.00824 1.20379 0.96337 0.94403 0.87470 0.95329 1.60711 1.32582 1.33713 1.03738 1.19227 0.94063 0.89940 0.88478 1.21525 1.43761 0.97048 0.95131 0.91744 1.25947 0.95587 0.95762 1.02355 1.70082 1.49679 1.10685 1.26999 0.85384 0.79099 0.78190 0.77616 1.19273 1.20765 1.19166 1.19836 1.02239 0.94318 0.95526 1.20873 0.97173 0.93778 0.97388 1.20756 1.04417 1.00788 0.91525 1.18807 0.96518 0.90399 0.87215 1.20022 1.05700 0.92692 0.98045 1.20943 0.97619 1.00120 0.91927 1.20563 1.02471 0.97512 0.91100 1.22219 1.02316 0.96305 0.98172 1.23287 0.93247 0.94289 0.91596 1.85967 1.67886 1.40017 1.30810 0.92133 0.91108 0.94302 0.84973 0.97815 1.02483 0.92616 0.85003 0.84305 0.85105 0.89697 0.89101 0.90985 0.86993 0.85155 0.91507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.26 9.39 71.98 0.68 -3.59 16 2 C 0.12 4.62 2.82 44.16 0.12 4.75 16 3 H 0.03 1.14 7.66 -2.39 -0.02 1.12 16 4 N -0.68 -30.05 5.69 -499.48 -2.84 -32.89 16 5 C 0.21 11.57 5.24 85.55 0.45 12.01 16 6 C -0.54 -31.19 9.32 25.60 0.24 -30.95 16 7 H 0.06 3.63 7.81 -2.91 -0.02 3.61 16 8 C 0.00 0.10 5.46 84.66 0.46 0.56 16 9 N -0.93 -57.23 13.29 21.45 0.28 -56.94 16 10 Si 0.97 44.86 29.54 68.60 2.03 46.89 16 11 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 13 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 14 C -0.12 -3.78 4.71 -19.88 -0.09 -3.88 16 15 C -0.07 -2.26 9.01 22.22 0.20 -2.06 16 16 C -0.16 -4.34 9.94 22.42 0.22 -4.12 16 17 C 0.12 3.06 6.47 22.52 0.15 3.21 16 18 C -0.16 -4.04 5.75 -19.75 -0.11 -4.16 16 19 C -0.09 -2.43 9.29 22.30 0.21 -2.23 16 20 C -0.08 -1.35 5.86 29.89 0.18 -1.17 16 21 C -0.15 -1.95 6.19 30.75 0.19 -1.76 16 22 C 0.05 0.74 7.03 72.12 0.51 1.24 16 23 O -0.33 -7.76 10.27 -91.79 -0.94 -8.71 16 24 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 26 H 0.04 1.47 7.45 -2.39 -0.02 1.45 16 27 H 0.33 14.43 7.99 -89.69 -0.72 13.72 16 28 H 0.00 0.22 7.44 -2.39 -0.02 0.21 16 29 H -0.04 -2.52 8.05 -2.39 -0.02 -2.54 16 30 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 31 H 0.13 4.15 7.73 -2.91 -0.02 4.13 16 32 H 0.14 3.40 8.06 -2.91 -0.02 3.37 16 33 H 0.13 3.27 8.03 -2.91 -0.02 3.25 16 34 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 Total: -1.00 -67.00 320.23 2.23 -64.77 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: 0.31 Total: 19.01 kcal Atomic # 6 Polarization: -35.53 SS G_CDS: 3.39 Total: -32.14 kcal Atomic # 7 Polarization: -87.27 SS G_CDS: -2.56 Total: -89.83 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: -0.94 Total: -8.71 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -67.00 2.23 -64.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852783249.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.616 kcal (2) G-P(sol) polarization free energy of solvation -67.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds