Wall clock time and date at job start Mon Mar 30 2020 06:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00332 * 2 1 4 4 H 1.48496 * 109.47187 * 240.00723 * 3 2 1 5 5 H 1.48504 * 109.46867 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47374 * 120.00102 * 3 2 1 7 7 C 1.37878 * 119.99665 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99655 * 173.23265 * 7 2 1 9 9 C 1.50700 * 120.00005 * 353.22431 * 7 2 1 10 10 C 1.53001 * 115.54908 * 84.85110 * 9 7 2 11 11 N 1.46893 * 109.47432 * 39.52570 * 10 9 7 12 12 C 1.46895 * 111.00281 * 185.36366 * 11 10 9 13 13 H 1.08998 * 109.71006 * 34.40274 * 12 11 10 14 14 C 1.53376 * 109.71861 * 155.00189 * 12 11 10 15 15 C 1.53018 * 109.75597 * 170.34414 * 14 12 11 16 16 C 1.53388 * 109.72559 * 288.29792 * 15 14 12 17 17 C 1.50880 * 108.19351 * 50.55468 * 16 15 14 18 18 C 1.34571 * 128.32590 * 163.33873 * 17 16 15 19 19 N 1.35198 * 107.61628 * 180.12663 * 18 17 16 20 20 H 0.97000 * 126.00411 * 179.97438 * 19 18 17 21 21 N 1.40309 * 107.99433 * 359.96067 * 19 18 17 22 22 C 1.30129 * 108.12653 * 359.96444 * 21 19 18 23 23 C 1.52998 * 117.51745 * 230.54404 * 9 7 2 24 24 C 1.53001 * 117.50183 * 299.17439 * 9 7 2 25 25 H 0.97000 * 120.00055 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.46764 * 279.52850 * 10 9 7 27 27 H 1.08998 * 109.47020 * 159.52885 * 10 9 7 28 28 H 1.00900 * 110.99889 * 61.40954 * 11 10 9 29 29 H 1.09001 * 109.42351 * 290.42885 * 14 12 11 30 30 H 1.08998 * 109.41988 * 50.31315 * 14 12 11 31 31 H 1.09007 * 109.43030 * 48.37232 * 15 14 12 32 32 H 1.08996 * 109.43155 * 168.21776 * 15 14 12 33 33 H 1.09000 * 109.71591 * 170.23177 * 16 15 14 34 34 H 1.09006 * 109.71556 * 290.83411 * 16 15 14 35 35 H 1.08002 * 126.19344 * 0.10338 * 18 17 16 36 36 H 1.08994 * 117.50259 * 214.97024 * 23 9 7 37 37 H 1.09005 * 117.50131 * 359.97438 * 23 9 7 38 38 H 1.09009 * 117.49521 * 359.97438 * 24 9 7 39 39 H 1.08993 * 117.49778 * 144.99673 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0788 -1.1973 -0.1108 9 6 1.2588 -2.4947 0.1529 10 6 0.6849 -3.0825 -1.1379 11 7 1.6450 -2.8901 -2.2329 12 6 1.0763 -3.3277 -3.5146 13 1 0.0066 -3.1195 -3.5325 14 6 1.7668 -2.5873 -4.6668 15 6 1.3523 -3.2080 -6.0026 16 6 2.0088 -4.5854 -6.1594 17 6 1.7392 -5.3811 -4.9061 18 6 1.8503 -6.7094 -4.7208 19 7 1.5038 -6.9744 -3.4412 20 1 1.4892 -7.8501 -3.0241 21 7 1.1694 -5.7604 -2.8223 22 6 1.3111 -4.8075 -3.6972 23 6 1.7602 -3.4761 1.2141 24 6 0.4593 -2.7031 1.4407 25 1 -0.4850 0.8400 0.0004 26 1 -0.2504 -2.5787 -1.3821 27 1 0.4988 -4.1477 -1.0007 28 1 2.5130 -3.3672 -2.0407 29 1 1.4753 -1.5371 -4.6492 30 1 2.8478 -2.6655 -4.5516 31 1 0.2681 -3.3179 -6.0305 32 1 1.6713 -2.5594 -6.8184 33 1 1.5827 -5.1000 -7.0206 34 1 3.0837 -4.4670 -6.2966 35 1 2.1599 -7.4328 -5.4606 36 1 1.6811 -4.5404 0.9929 37 1 2.6299 -3.1813 1.8014 38 1 0.4731 -1.8996 2.1772 39 1 -0.4754 -3.2589 1.3683 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857865843.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:04 Heat of formation + Delta-G solvation = 93.625192 kcal Electronic energy + Delta-G solvation = -19915.174360 eV Core-core repulsion = 17052.590855 eV Total energy + Delta-G solvation = -2862.583505 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.28244 -37.22163 -36.17110 -33.76276 -31.67334 -30.75926 -29.95056 -27.77446 -25.37937 -24.31090 -22.86899 -21.49692 -20.96075 -20.42996 -18.99350 -18.51932 -17.44479 -15.96675 -15.15464 -14.96969 -14.43430 -14.11158 -14.02453 -13.73359 -13.32819 -13.31781 -12.73809 -12.36626 -12.24470 -11.66790 -11.49587 -11.31967 -10.95830 -10.79592 -10.65743 -10.57487 -10.46314 -10.33427 -10.05844 -9.97852 -9.30366 -9.24122 -8.66759 -8.30721 -8.18361 -7.87159 -7.32588 -5.79258 -3.79069 2.05105 2.92233 3.00396 3.45919 3.49231 3.52822 4.60432 4.65268 4.86352 4.94245 5.15508 5.38045 5.41140 5.50349 5.56274 5.61492 5.72463 5.86822 5.87789 5.98688 6.12934 6.25970 6.33212 6.35637 6.51485 6.56935 6.65803 6.75826 6.78084 6.87803 6.93404 7.10411 7.24487 7.42240 7.61088 7.63713 7.88184 8.11711 8.18213 8.38328 8.72120 9.16616 9.82497 11.31419 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.022478 B = 0.006273 C = 0.005217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.372015 B = 4462.583731 C = 5365.670138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.073 3.927 3 Si 0.885 3.115 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.462 4.462 8 H 0.055 0.945 9 C 0.051 3.949 10 C 0.108 3.892 11 N -0.639 5.639 12 C 0.166 3.834 13 H 0.088 0.912 14 C -0.101 4.101 15 C -0.118 4.118 16 C -0.039 4.039 17 C -0.233 4.233 18 C 0.048 3.952 19 N -0.492 5.492 20 H 0.434 0.566 21 N -0.276 5.276 22 C 0.058 3.942 23 C -0.218 4.218 24 C -0.159 4.159 25 H 0.255 0.745 26 H 0.065 0.935 27 H 0.010 0.990 28 H 0.334 0.666 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.170 0.830 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.473 -11.502 -12.079 16.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.129 4.129 3 Si 0.714 3.286 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.500 4.500 8 H 0.073 0.927 9 C 0.050 3.950 10 C -0.021 4.021 11 N -0.266 5.266 12 C 0.053 3.947 13 H 0.106 0.894 14 C -0.140 4.140 15 C -0.156 4.156 16 C -0.077 4.077 17 C -0.245 4.245 18 C -0.097 4.097 19 N -0.200 5.200 20 H 0.277 0.723 21 N -0.098 5.098 22 C -0.113 4.113 23 C -0.256 4.256 24 C -0.197 4.197 25 H 0.065 0.935 26 H 0.084 0.916 27 H 0.028 0.972 28 H 0.152 0.848 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.187 0.813 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.819 -10.981 -10.964 15.623 hybrid contribution 0.646 -0.604 -0.447 0.991 sum 2.464 -11.585 -11.411 16.447 Atomic orbital electron populations 1.70004 1.05771 1.25901 1.50595 1.24842 0.94623 0.98370 0.95051 0.86786 0.79648 0.83810 0.78378 1.20278 1.21708 1.20760 1.20129 0.92467 0.88416 1.48989 0.92692 1.18886 0.96993 0.93622 0.85499 1.21521 0.94637 0.94969 0.90950 1.60423 1.06330 1.59793 1.00103 1.20398 0.99705 0.82104 0.92494 0.89412 1.21507 1.00846 0.99812 0.91796 1.21586 1.00638 0.95532 0.97823 1.19981 1.00205 0.94510 0.93004 1.20186 1.13724 0.92692 0.97919 1.21975 1.02126 0.97313 0.88292 1.46479 1.55679 1.08987 1.08868 0.72263 1.77184 1.22291 0.89513 1.20784 1.23868 0.97958 0.98119 0.91371 1.23062 0.98262 0.95596 1.08643 1.22471 0.92089 1.01105 1.04050 0.93521 0.91625 0.97224 0.84847 0.90346 0.91563 0.91989 0.91645 0.91823 0.91529 0.81297 0.92107 0.90823 0.90240 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.68 12.95 55.43 0.72 -24.96 16 2 C 0.07 2.04 5.39 -17.82 -0.10 1.94 16 3 Si 0.89 21.82 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.46 -12.78 8.15 -34.44 -0.28 -13.06 16 8 H 0.05 1.54 7.82 -52.49 -0.41 1.13 16 9 C 0.05 1.29 1.73 -155.66 -0.27 1.02 16 10 C 0.11 2.53 5.58 -3.83 -0.02 2.51 16 11 N -0.64 -13.48 5.56 -107.63 -0.60 -14.08 16 12 C 0.17 2.94 2.84 -68.56 -0.19 2.75 16 13 H 0.09 1.63 7.72 -51.93 -0.40 1.23 16 14 C -0.10 -1.51 5.48 -26.53 -0.15 -1.65 16 15 C -0.12 -1.39 5.87 -26.52 -0.16 -1.54 16 16 C -0.04 -0.43 6.28 -27.59 -0.17 -0.60 16 17 C -0.23 -3.15 5.89 -104.98 -0.62 -3.77 16 18 C 0.05 0.55 11.95 -17.37 -0.21 0.34 16 19 N -0.49 -6.26 7.37 30.35 0.22 -6.04 16 20 H 0.43 4.04 8.96 -182.44 -1.64 2.40 16 21 N -0.28 -4.76 11.71 33.75 0.40 -4.36 16 22 C 0.06 0.97 6.36 -82.35 -0.52 0.45 16 23 C -0.22 -5.05 9.88 -26.73 -0.26 -5.32 16 24 C -0.16 -3.93 9.49 -26.73 -0.25 -4.18 16 25 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 26 H 0.07 1.68 7.93 -51.93 -0.41 1.27 16 27 H 0.01 0.22 7.00 -51.93 -0.36 -0.14 16 28 H 0.33 7.08 8.52 -39.29 -0.33 6.74 16 29 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 31 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.17 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.06 1.31 8.08 -51.93 -0.42 0.89 16 37 H 0.07 1.68 8.14 -51.93 -0.42 1.26 16 38 H 0.08 2.07 8.14 -51.92 -0.42 1.65 16 39 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 318.93 15.07 4.81 4.81 Total: -1.00 -31.22 318.93 -10.01 -41.23 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -7.33 Total: 7.74 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: -3.20 Total: -21.13 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: 0.74 Total: -49.44 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.22 -10.01 -41.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857865843.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.857 kcal (2) G-P(sol) polarization free energy of solvation -31.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds