Wall clock time and date at job start Mon Mar 30 2020 06:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00332 * 2 1 4 4 H 1.48496 * 109.47187 * 240.00723 * 3 2 1 5 5 H 1.48504 * 109.46867 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47374 * 120.00102 * 3 2 1 7 7 C 1.37878 * 119.99665 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99655 * 173.23265 * 7 2 1 9 9 C 1.50700 * 120.00005 * 353.22431 * 7 2 1 10 10 C 1.53001 * 115.54908 * 84.85110 * 9 7 2 11 11 N 1.46893 * 109.47432 * 39.52570 * 10 9 7 12 12 C 1.46895 * 111.00281 * 185.36366 * 11 10 9 13 13 H 1.08998 * 109.71006 * 34.40274 * 12 11 10 14 14 C 1.53376 * 109.71861 * 155.00189 * 12 11 10 15 15 C 1.53018 * 109.75597 * 170.34414 * 14 12 11 16 16 C 1.53388 * 109.72559 * 288.29792 * 15 14 12 17 17 C 1.50880 * 108.19351 * 50.55468 * 16 15 14 18 18 C 1.34571 * 128.32590 * 163.33873 * 17 16 15 19 19 N 1.35198 * 107.61628 * 180.12663 * 18 17 16 20 20 H 0.97000 * 126.00411 * 179.97438 * 19 18 17 21 21 N 1.40309 * 107.99433 * 359.96067 * 19 18 17 22 22 C 1.30129 * 108.12653 * 359.96444 * 21 19 18 23 23 C 1.52998 * 117.51745 * 230.54404 * 9 7 2 24 24 C 1.53001 * 117.50183 * 299.17439 * 9 7 2 25 25 H 0.97000 * 120.00055 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.46764 * 279.52850 * 10 9 7 27 27 H 1.08998 * 109.47020 * 159.52885 * 10 9 7 28 28 H 1.00900 * 110.99889 * 61.40954 * 11 10 9 29 29 H 1.09001 * 109.42351 * 290.42885 * 14 12 11 30 30 H 1.08998 * 109.41988 * 50.31315 * 14 12 11 31 31 H 1.09007 * 109.43030 * 48.37232 * 15 14 12 32 32 H 1.08996 * 109.43155 * 168.21776 * 15 14 12 33 33 H 1.09000 * 109.71591 * 170.23177 * 16 15 14 34 34 H 1.09006 * 109.71556 * 290.83411 * 16 15 14 35 35 H 1.08002 * 126.19344 * 0.10338 * 18 17 16 36 36 H 1.08994 * 117.50259 * 214.97024 * 23 9 7 37 37 H 1.09005 * 117.50131 * 359.97438 * 23 9 7 38 38 H 1.09009 * 117.49521 * 359.97438 * 24 9 7 39 39 H 1.08993 * 117.49778 * 144.99673 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0788 -1.1973 -0.1108 9 6 1.2588 -2.4947 0.1529 10 6 0.6849 -3.0825 -1.1379 11 7 1.6450 -2.8901 -2.2329 12 6 1.0763 -3.3277 -3.5146 13 1 0.0066 -3.1195 -3.5325 14 6 1.7668 -2.5873 -4.6668 15 6 1.3523 -3.2080 -6.0026 16 6 2.0088 -4.5854 -6.1594 17 6 1.7392 -5.3811 -4.9061 18 6 1.8503 -6.7094 -4.7208 19 7 1.5038 -6.9744 -3.4412 20 1 1.4892 -7.8501 -3.0241 21 7 1.1694 -5.7604 -2.8223 22 6 1.3111 -4.8075 -3.6972 23 6 1.7602 -3.4761 1.2141 24 6 0.4593 -2.7031 1.4407 25 1 -0.4850 0.8400 0.0004 26 1 -0.2504 -2.5787 -1.3821 27 1 0.4988 -4.1477 -1.0007 28 1 2.5130 -3.3672 -2.0407 29 1 1.4753 -1.5371 -4.6492 30 1 2.8478 -2.6655 -4.5516 31 1 0.2681 -3.3179 -6.0305 32 1 1.6713 -2.5594 -6.8184 33 1 1.5827 -5.1000 -7.0206 34 1 3.0837 -4.4670 -6.2966 35 1 2.1599 -7.4328 -5.4606 36 1 1.6811 -4.5404 0.9929 37 1 2.6299 -3.1813 1.8014 38 1 0.4731 -1.8996 2.1772 39 1 -0.4754 -3.2589 1.3683 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857865843.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:04 Heat of formation + Delta-G solvation = 73.512527 kcal Electronic energy + Delta-G solvation = -19916.046511 eV Core-core repulsion = 17052.590855 eV Total energy + Delta-G solvation = -2863.455656 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.34644 -38.89763 -37.63586 -35.12213 -33.82393 -31.95303 -31.07690 -29.02657 -27.43207 -25.83847 -24.25789 -22.90078 -22.57238 -21.57360 -20.86722 -19.81382 -18.40985 -17.92505 -16.75210 -16.34260 -16.15099 -15.72178 -15.15462 -15.00813 -14.89753 -14.76108 -14.12967 -13.73436 -13.53095 -13.36858 -13.16952 -12.80319 -12.67914 -12.61186 -12.35218 -12.17704 -11.97564 -11.71438 -11.54461 -11.37837 -11.03799 -10.71334 -10.43378 -10.28861 -9.86577 -9.30141 -8.96173 -7.94705 -5.99854 1.04859 1.47655 1.49154 1.55500 1.82297 2.06803 2.54280 3.34195 3.39229 3.56197 3.69010 3.94372 4.14058 4.26808 4.39708 4.48458 4.52954 4.59089 4.60287 4.71104 4.81026 4.88808 4.91378 4.98740 5.00933 5.11602 5.16470 5.26371 5.29455 5.37501 5.43335 5.55268 5.63052 5.70556 5.77276 5.92355 6.39870 6.55323 6.60176 6.72374 6.84595 7.01169 7.64104 9.15257 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.022478 B = 0.006273 C = 0.005217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.372015 B = 4462.583731 C = 5365.670138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.027 3.973 3 Si 0.944 3.056 4 H -0.273 1.273 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.469 4.469 8 H 0.047 0.953 9 C 0.025 3.975 10 C 0.130 3.870 11 N -0.650 5.650 12 C 0.165 3.835 13 H 0.065 0.935 14 C -0.095 4.095 15 C -0.112 4.112 16 C -0.033 4.033 17 C -0.253 4.253 18 C 0.071 3.929 19 N -0.483 5.483 20 H 0.448 0.552 21 N -0.326 5.326 22 C 0.038 3.962 23 C -0.193 4.193 24 C -0.165 4.165 25 H 0.254 0.746 26 H 0.032 0.968 27 H 0.012 0.988 28 H 0.332 0.668 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.221 0.779 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.844 -13.007 -14.032 19.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.172 4.172 3 Si 0.771 3.229 4 H -0.198 1.198 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.507 4.507 8 H 0.065 0.935 9 C 0.024 3.976 10 C 0.001 3.999 11 N -0.277 5.277 12 C 0.052 3.948 13 H 0.083 0.917 14 C -0.134 4.134 15 C -0.150 4.150 16 C -0.071 4.071 17 C -0.265 4.265 18 C -0.075 4.075 19 N -0.192 5.192 20 H 0.294 0.706 21 N -0.150 5.150 22 C -0.131 4.131 23 C -0.230 4.230 24 C -0.203 4.203 25 H 0.062 0.938 26 H 0.051 0.949 27 H 0.030 0.970 28 H 0.149 0.851 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.237 0.763 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.198 -12.497 -12.917 18.255 hybrid contribution 0.215 -0.240 0.158 0.359 sum 3.413 -12.737 -12.759 18.349 Atomic orbital electron populations 1.70127 1.07003 1.26389 1.51704 1.25500 0.95344 1.01353 0.94979 0.85843 0.78463 0.80107 0.78475 1.19819 1.21546 1.20245 1.20322 0.92206 0.89680 1.48532 0.93486 1.19052 0.97930 0.94006 0.86596 1.21126 0.93580 0.94219 0.90999 1.60367 1.05904 1.60665 1.00794 1.20339 0.98520 0.84234 0.91663 0.91675 1.21456 1.00290 0.98837 0.92779 1.21561 1.00501 0.96716 0.96221 1.20029 1.00909 0.93397 0.92755 1.20551 1.14368 0.93801 0.97773 1.22715 0.99320 0.97435 0.88033 1.46493 1.54716 1.08523 1.09499 0.70589 1.77058 1.24222 0.91194 1.22482 1.23592 0.99329 0.97086 0.93128 1.23012 0.97249 0.96092 1.06625 1.22382 0.93276 1.01213 1.03428 0.93761 0.94944 0.97040 0.85083 0.91944 0.91772 0.92488 0.89303 0.89076 0.90460 0.76295 0.90247 0.90465 0.92146 0.91554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.37 12.95 21.45 0.28 -54.09 16 2 C 0.03 1.53 5.39 84.66 0.46 1.99 16 3 Si 0.94 45.32 29.54 68.60 2.03 47.35 16 4 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 7 C -0.47 -26.41 8.15 25.60 0.21 -26.20 16 8 H 0.05 2.66 7.82 -2.91 -0.02 2.64 16 9 C 0.02 1.29 1.73 -52.93 -0.09 1.19 16 10 C 0.13 6.32 5.58 86.30 0.48 6.80 16 11 N -0.65 -28.37 5.56 -494.42 -2.75 -31.12 16 12 C 0.17 6.02 2.84 44.37 0.13 6.15 16 13 H 0.07 2.60 7.72 -2.39 -0.02 2.58 16 14 C -0.09 -2.85 5.48 30.73 0.17 -2.68 16 15 C -0.11 -2.44 5.87 30.73 0.18 -2.26 16 16 C -0.03 -0.61 6.28 30.04 0.19 -0.42 16 17 C -0.25 -6.20 5.89 -20.10 -0.12 -6.31 16 18 C 0.07 1.34 11.95 83.33 1.00 2.33 16 19 N -0.48 -11.16 7.37 -57.88 -0.43 -11.58 16 20 H 0.45 7.23 8.96 -213.19 -1.91 5.31 16 21 N -0.33 -11.10 11.71 -47.14 -0.55 -11.65 16 22 C 0.04 1.26 6.36 43.44 0.28 1.54 16 23 C -0.19 -8.85 9.88 30.59 0.30 -8.55 16 24 C -0.16 -8.29 9.49 30.59 0.29 -8.00 16 25 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 26 H 0.03 1.75 7.93 -2.38 -0.02 1.73 16 27 H 0.01 0.55 7.00 -2.39 -0.02 0.53 16 28 H 0.33 14.44 8.52 -89.69 -0.76 13.67 16 29 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.06 1.93 8.10 -2.39 -0.02 1.91 16 31 H 0.06 1.30 8.10 -2.38 -0.02 1.28 16 32 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.08 1.29 8.14 -2.38 -0.02 1.28 16 35 H 0.22 1.78 8.06 -2.91 -0.02 1.76 16 36 H 0.08 3.34 8.08 -2.39 -0.02 3.33 16 37 H 0.08 3.47 8.14 -2.38 -0.02 3.46 16 38 H 0.06 3.23 8.14 -2.38 -0.02 3.21 16 39 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 Total: -1.00 -68.97 318.93 0.42 -68.54 By element: Atomic # 1 Polarization: 28.57 SS G_CDS: -1.62 Total: 26.95 kcal Atomic # 6 Polarization: -37.88 SS G_CDS: 3.46 Total: -34.41 kcal Atomic # 7 Polarization: -104.99 SS G_CDS: -3.45 Total: -108.44 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -68.97 0.42 -68.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857865843.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.057 kcal (2) G-P(sol) polarization free energy of solvation -68.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds