Wall clock time and date at job start Mon Mar 30 2020 07:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47478 * 309.74469 * 3 2 1 5 5 C 1.53003 * 109.47407 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47306 * 180.02562 * 5 4 3 7 7 C 1.52995 * 109.47181 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.47181 * 180.02562 * 7 6 5 9 9 N 1.46499 * 109.47215 * 180.02562 * 8 7 6 10 10 C 1.35309 * 125.87027 * 124.97307 * 9 8 7 11 11 C 1.35353 * 106.17498 * 179.97438 * 10 9 8 12 12 C 1.50706 * 126.75076 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.46793 * 124.99895 * 12 11 10 14 14 H 1.08001 * 119.99975 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99507 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99719 * 180.02562 * 15 13 12 17 17 Si 1.86796 * 120.00155 * 359.97438 * 15 13 12 18 18 H 1.48507 * 109.46700 * 90.00271 * 17 15 13 19 19 H 1.48501 * 109.46990 * 209.99805 * 17 15 13 20 20 H 1.48495 * 109.47253 * 330.00154 * 17 15 13 21 21 N 1.33775 * 106.49785 * 359.97438 * 11 10 9 22 22 N 1.28637 * 108.88137 * 0.02562 * 21 11 10 23 23 H 4.44646 * 5.63378 * 179.97438 * 4 1 2 24 24 H 1.09006 * 109.47143 * 189.74539 * 3 2 1 25 25 H 1.09003 * 109.47541 * 69.75087 * 3 2 1 26 26 H 1.09001 * 109.47297 * 60.00079 * 4 3 2 27 27 H 1.09007 * 109.47061 * 300.00065 * 4 3 2 28 28 H 1.08992 * 109.47243 * 59.99876 * 5 4 3 29 29 H 1.09007 * 109.46807 * 299.99907 * 5 4 3 30 30 H 1.08997 * 109.46834 * 59.99484 * 6 5 4 31 31 H 1.09004 * 109.46658 * 300.00057 * 6 5 4 32 32 H 1.09001 * 109.46985 * 59.99547 * 7 6 5 33 33 H 1.09007 * 109.47030 * 299.99742 * 7 6 5 34 34 H 1.08997 * 109.46834 * 59.99681 * 8 7 6 35 35 H 1.09007 * 109.46928 * 299.99805 * 8 7 6 36 36 H 1.08002 * 126.91313 * 0.02562 * 10 9 8 37 37 H 1.08997 * 109.46870 * 244.99788 * 12 11 10 38 38 H 1.09004 * 109.46999 * 5.00398 * 12 11 10 39 39 H 0.96992 * 119.99928 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1564 -0.9213 1.1091 5 6 4.6865 -0.9202 1.1095 6 6 5.1969 -1.8427 2.2182 7 6 6.7269 -1.8420 2.2182 8 6 7.2374 -2.7650 3.3265 9 7 8.7024 -2.7639 3.3268 10 6 9.4947 -2.4754 4.3850 11 6 10.7693 -2.5947 3.9453 12 6 12.0248 -2.3747 4.7493 13 6 12.8946 -3.6028 4.6686 14 1 12.5707 -4.4569 4.0924 15 6 14.1037 -3.6358 5.3304 16 7 14.8630 -4.7073 5.2595 17 14 14.6640 -2.1582 6.3264 18 1 14.1780 -2.2900 7.7235 19 1 16.1476 -2.0924 6.3225 20 1 14.1119 -0.9178 5.7251 21 7 10.6952 -2.9463 2.6568 22 7 9.4569 -3.0381 2.3208 23 1 -1.0499 0.0000 0.0004 24 1 3.0088 1.0137 0.1740 25 1 3.0095 -0.3549 -0.9641 26 1 2.7936 -1.9344 0.9352 27 1 2.7929 -0.5657 2.0733 28 1 5.0490 0.0929 1.2836 29 1 5.0503 -1.2756 0.1453 30 1 4.8344 -2.8557 2.0436 31 1 4.8330 -1.4877 3.1824 32 1 7.0897 -0.8290 2.3925 33 1 7.0904 -2.1972 1.2538 34 1 6.8745 -3.7778 3.1516 35 1 6.8739 -2.4102 4.2910 36 1 9.1746 -2.2051 5.3805 37 1 12.5673 -1.5183 4.3489 38 1 11.7613 -2.1839 5.7897 39 1 15.7134 -4.7307 5.7254 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900643149.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:51 Heat of formation + Delta-G solvation = 119.234554 kcal Electronic energy + Delta-G solvation = -17746.380692 eV Core-core repulsion = 14884.907692 eV Total energy + Delta-G solvation = -2861.473000 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.55629 -37.36012 -35.61455 -33.87670 -33.05586 -31.51631 -31.20459 -28.71295 -27.78973 -25.23056 -23.14985 -22.30851 -21.44165 -21.11231 -19.80968 -18.43613 -16.80871 -16.68048 -16.47277 -15.82583 -15.03269 -14.73033 -14.33644 -14.19393 -13.81423 -13.64254 -13.25369 -13.06358 -12.32703 -12.32044 -12.14095 -11.98393 -11.62767 -11.42513 -11.33398 -11.06204 -10.87988 -10.62304 -10.57225 -10.48768 -10.45911 -10.08592 -9.83089 -9.37085 -9.30007 -8.52134 -8.23741 -5.98097 -3.95976 2.19230 2.41777 2.45331 2.77613 3.32521 3.40605 3.41838 3.44451 3.92254 4.32174 4.44346 4.47863 4.58159 4.62626 4.77985 4.89127 4.99824 5.07784 5.14813 5.26816 5.31728 5.34337 5.37837 5.46619 5.58107 5.62441 5.66393 5.75020 5.84840 5.92518 5.96627 6.01130 6.26716 6.88586 7.11701 7.14771 7.22881 7.23856 7.75148 8.59806 9.10086 9.27165 9.61001 11.15490 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.067432 B = 0.002403 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.136011 B =11651.056663 C =11795.899321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.185 4.185 3 C -0.016 4.016 4 C -0.114 4.114 5 C -0.120 4.120 6 C -0.116 4.116 7 C -0.133 4.133 8 C 0.121 3.879 9 N -0.303 5.303 10 C -0.081 4.081 11 C 0.037 3.963 12 C 0.060 3.940 13 C -0.506 4.506 14 H 0.076 0.924 15 C 0.067 3.933 16 N -0.901 5.901 17 Si 0.877 3.123 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.264 1.264 21 N -0.256 5.256 22 N -0.105 5.105 23 H 0.216 0.784 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.181 0.819 37 H 0.037 0.963 38 H 0.030 0.970 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.834 9.895 -5.133 29.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.185 4.185 3 C -0.053 4.053 4 C -0.152 4.152 5 C -0.158 4.158 6 C -0.154 4.154 7 C -0.171 4.171 8 C -0.001 4.001 9 N -0.099 5.099 10 C -0.230 4.230 11 C -0.101 4.101 12 C 0.021 3.979 13 C -0.545 4.545 14 H 0.094 0.906 15 C -0.134 4.134 16 N -0.540 5.540 17 Si 0.704 3.296 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.189 1.189 21 N -0.123 5.123 22 N -0.084 5.084 23 H 0.233 0.767 24 H 0.105 0.895 25 H 0.105 0.895 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.110 0.890 35 H 0.117 0.883 36 H 0.199 0.801 37 H 0.055 0.945 38 H 0.048 0.952 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -26.628 9.405 -6.558 28.992 hybrid contribution -0.055 0.903 1.790 2.006 sum -26.683 10.309 -4.768 29.000 Atomic orbital electron populations 1.24929 0.96032 1.01199 1.01101 1.23232 0.94695 1.00292 1.00327 1.18801 0.84565 1.01388 1.00518 1.21554 0.95561 0.99760 0.98303 1.21593 0.94495 1.00293 0.99405 1.21510 0.94034 1.00504 0.99352 1.21888 0.95797 0.99962 0.99439 1.21959 0.74148 1.02402 1.01624 1.47216 1.08208 1.46057 1.08389 1.23332 0.91323 1.12954 0.95386 1.22498 0.95585 1.00234 0.91767 1.18143 0.88240 0.98846 0.92712 1.20931 1.02368 0.99953 1.31225 0.90597 1.24982 0.96270 0.95847 0.96290 1.69904 1.12262 1.28234 1.43598 0.86822 0.78048 0.83988 0.80726 1.20254 1.21237 1.18900 1.75099 1.07895 1.15687 1.13639 1.78181 0.97068 1.19983 1.13157 0.76728 0.89513 0.89452 0.91467 0.91544 0.91539 0.91359 0.91363 0.91560 0.91084 0.89926 0.88970 0.88305 0.80146 0.94474 0.95166 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -1.53 19.25 29.55 0.57 -0.96 16 2 C -0.19 -1.45 13.34 -37.12 -0.50 -1.95 16 3 C -0.02 -0.10 5.70 -29.52 -0.17 -0.26 16 4 C -0.11 -0.64 5.17 -26.73 -0.14 -0.78 16 5 C -0.12 -0.69 5.21 -26.73 -0.14 -0.83 16 6 C -0.12 -0.70 5.21 -26.73 -0.14 -0.84 16 7 C -0.13 -1.15 5.34 -26.73 -0.14 -1.29 16 8 C 0.12 1.21 6.46 -4.04 -0.03 1.18 16 9 N -0.30 -4.92 3.44 -61.26 -0.21 -5.13 16 10 C -0.08 -1.43 11.49 -17.05 -0.20 -1.62 16 11 C 0.04 0.83 6.44 -82.77 -0.53 0.30 16 12 C 0.06 1.47 4.62 -29.03 -0.13 1.33 16 13 C -0.51 -14.96 9.64 -34.44 -0.33 -15.29 16 14 H 0.08 2.51 7.98 -52.49 -0.42 2.09 16 15 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 16 N -0.90 -28.28 13.96 55.43 0.77 -27.51 16 17 Si 0.88 21.45 27.47 -169.99 -4.67 16.78 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 21 N -0.26 -6.16 12.40 33.29 0.41 -5.74 16 22 N -0.11 -2.13 12.92 60.35 0.78 -1.35 16 23 H 0.22 0.82 7.80 -54.10 -0.42 0.40 16 24 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.85 8.12 -51.93 -0.42 0.43 16 34 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.10 0.72 8.07 -51.93 -0.42 0.30 16 36 H 0.18 2.41 8.06 -52.49 -0.42 1.99 16 37 H 0.04 0.92 7.20 -51.93 -0.37 0.55 16 38 H 0.03 0.68 7.55 -51.93 -0.39 0.29 16 39 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 338.80 15.07 5.11 5.11 Total: -1.00 -35.61 338.80 -6.05 -41.65 By element: Atomic # 1 Polarization: 1.59 SS G_CDS: -6.26 Total: -4.68 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: -1.97 Total: -19.12 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: 1.76 Total: -39.73 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -35.61 -6.05 -41.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900643149.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.886 kcal (2) G-P(sol) polarization free energy of solvation -35.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds