Wall clock time and date at job start Mon Mar 30 2020 07:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47478 * 309.74469 * 3 2 1 5 5 C 1.53003 * 109.47407 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47306 * 180.02562 * 5 4 3 7 7 C 1.52995 * 109.47181 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.47181 * 180.02562 * 7 6 5 9 9 N 1.46499 * 109.47215 * 180.02562 * 8 7 6 10 10 C 1.35309 * 125.87027 * 124.97307 * 9 8 7 11 11 C 1.35353 * 106.17498 * 179.97438 * 10 9 8 12 12 C 1.50706 * 126.75076 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.46793 * 124.99895 * 12 11 10 14 14 H 1.08001 * 119.99975 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99507 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99719 * 180.02562 * 15 13 12 17 17 Si 1.86796 * 120.00155 * 359.97438 * 15 13 12 18 18 H 1.48507 * 109.46700 * 90.00271 * 17 15 13 19 19 H 1.48501 * 109.46990 * 209.99805 * 17 15 13 20 20 H 1.48495 * 109.47253 * 330.00154 * 17 15 13 21 21 N 1.33775 * 106.49785 * 359.97438 * 11 10 9 22 22 N 1.28637 * 108.88137 * 0.02562 * 21 11 10 23 23 H 4.44646 * 5.63378 * 179.97438 * 4 1 2 24 24 H 1.09006 * 109.47143 * 189.74539 * 3 2 1 25 25 H 1.09003 * 109.47541 * 69.75087 * 3 2 1 26 26 H 1.09001 * 109.47297 * 60.00079 * 4 3 2 27 27 H 1.09007 * 109.47061 * 300.00065 * 4 3 2 28 28 H 1.08992 * 109.47243 * 59.99876 * 5 4 3 29 29 H 1.09007 * 109.46807 * 299.99907 * 5 4 3 30 30 H 1.08997 * 109.46834 * 59.99484 * 6 5 4 31 31 H 1.09004 * 109.46658 * 300.00057 * 6 5 4 32 32 H 1.09001 * 109.46985 * 59.99547 * 7 6 5 33 33 H 1.09007 * 109.47030 * 299.99742 * 7 6 5 34 34 H 1.08997 * 109.46834 * 59.99681 * 8 7 6 35 35 H 1.09007 * 109.46928 * 299.99805 * 8 7 6 36 36 H 1.08002 * 126.91313 * 0.02562 * 10 9 8 37 37 H 1.08997 * 109.46870 * 244.99788 * 12 11 10 38 38 H 1.09004 * 109.46999 * 5.00398 * 12 11 10 39 39 H 0.96992 * 119.99928 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1564 -0.9213 1.1091 5 6 4.6865 -0.9202 1.1095 6 6 5.1969 -1.8427 2.2182 7 6 6.7269 -1.8420 2.2182 8 6 7.2374 -2.7650 3.3265 9 7 8.7024 -2.7639 3.3268 10 6 9.4947 -2.4754 4.3850 11 6 10.7693 -2.5947 3.9453 12 6 12.0248 -2.3747 4.7493 13 6 12.8946 -3.6028 4.6686 14 1 12.5707 -4.4569 4.0924 15 6 14.1037 -3.6358 5.3304 16 7 14.8630 -4.7073 5.2595 17 14 14.6640 -2.1582 6.3264 18 1 14.1780 -2.2900 7.7235 19 1 16.1476 -2.0924 6.3225 20 1 14.1119 -0.9178 5.7251 21 7 10.6952 -2.9463 2.6568 22 7 9.4569 -3.0381 2.3208 23 1 -1.0499 0.0000 0.0004 24 1 3.0088 1.0137 0.1740 25 1 3.0095 -0.3549 -0.9641 26 1 2.7936 -1.9344 0.9352 27 1 2.7929 -0.5657 2.0733 28 1 5.0490 0.0929 1.2836 29 1 5.0503 -1.2756 0.1453 30 1 4.8344 -2.8557 2.0436 31 1 4.8330 -1.4877 3.1824 32 1 7.0897 -0.8290 2.3925 33 1 7.0904 -2.1972 1.2538 34 1 6.8745 -3.7778 3.1516 35 1 6.8739 -2.4102 4.2910 36 1 9.1746 -2.2051 5.3805 37 1 12.5673 -1.5183 4.3489 38 1 11.7613 -2.1839 5.7897 39 1 15.7134 -4.7307 5.7254 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900643149.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:51 Heat of formation + Delta-G solvation = 96.590770 kcal Electronic energy + Delta-G solvation = -17747.362600 eV Core-core repulsion = 14884.907692 eV Total energy + Delta-G solvation = -2862.454908 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.02710 -37.95494 -36.49908 -35.37920 -34.37466 -33.12988 -32.23563 -29.97124 -29.10012 -26.03241 -25.08303 -23.16344 -22.49994 -21.90149 -21.23180 -18.92788 -18.87674 -17.99164 -17.30861 -16.80696 -16.28833 -15.74204 -15.57631 -15.22403 -15.04469 -14.47840 -14.28706 -14.17896 -13.95141 -13.73128 -12.94106 -12.88123 -12.81032 -12.42741 -12.36439 -12.17256 -11.89923 -11.88381 -11.86855 -11.61112 -11.41268 -11.36456 -11.05547 -10.97621 -10.76868 -10.71740 -9.85079 -8.23523 -6.28958 0.79570 1.41562 1.46398 1.57951 1.64269 1.77280 1.88970 1.92010 2.42047 3.10602 3.45042 3.57935 3.73304 3.85746 4.06755 4.10959 4.21243 4.26473 4.34037 4.42442 4.44218 4.60312 4.67070 4.77246 4.85339 4.89971 4.98100 5.05096 5.08700 5.16213 5.22692 5.29800 5.36722 5.38871 5.45992 5.51526 5.63933 5.89547 6.33354 6.71555 6.76312 7.32780 7.73649 8.94415 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.067432 B = 0.002403 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.136011 B =11651.056663 C =11795.899321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.216 4.216 3 C -0.019 4.019 4 C -0.107 4.107 5 C -0.118 4.118 6 C -0.108 4.108 7 C -0.125 4.125 8 C 0.106 3.894 9 N -0.285 5.285 10 C -0.048 4.048 11 C -0.013 4.013 12 C 0.067 3.933 13 C -0.520 4.520 14 H 0.016 0.984 15 C 0.001 3.999 16 N -0.956 5.956 17 Si 0.961 3.039 18 H -0.255 1.255 19 H -0.287 1.287 20 H -0.242 1.242 21 N -0.315 5.315 22 N -0.123 5.123 23 H 0.240 0.760 24 H 0.093 0.907 25 H 0.091 0.909 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.106 0.894 35 H 0.141 0.859 36 H 0.233 0.767 37 H 0.033 0.967 38 H 0.061 0.939 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.247 12.098 -3.073 31.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.216 4.216 3 C -0.056 4.056 4 C -0.144 4.144 5 C -0.156 4.156 6 C -0.146 4.146 7 C -0.164 4.164 8 C -0.013 4.013 9 N -0.081 5.081 10 C -0.199 4.199 11 C -0.152 4.152 12 C 0.028 3.972 13 C -0.558 4.558 14 H 0.034 0.966 15 C -0.195 4.195 16 N -0.597 5.597 17 Si 0.783 3.217 18 H -0.179 1.179 19 H -0.213 1.213 20 H -0.165 1.165 21 N -0.181 5.181 22 N -0.102 5.102 23 H 0.256 0.744 24 H 0.112 0.888 25 H 0.109 0.891 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.124 0.876 35 H 0.159 0.841 36 H 0.249 0.751 37 H 0.052 0.948 38 H 0.079 0.921 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -29.098 11.603 -4.536 31.653 hybrid contribution 0.526 0.129 1.068 1.198 sum -28.572 11.733 -3.468 31.081 Atomic orbital electron populations 1.25701 0.97033 1.00530 1.00407 1.23832 0.95731 1.01019 1.01068 1.18885 0.83847 1.01927 1.00892 1.21467 0.95250 0.99475 0.98224 1.21562 0.94545 1.00349 0.99145 1.21465 0.91743 1.01049 1.00316 1.21818 0.97603 0.99113 0.97821 1.22617 0.70382 1.03909 1.04392 1.47725 1.10236 1.43039 1.07078 1.23875 0.89505 1.09488 0.96996 1.22461 0.97063 1.03705 0.91931 1.17968 0.88537 0.95949 0.94746 1.21151 1.03865 1.00363 1.30415 0.96562 1.26109 0.96020 0.99728 0.97679 1.70095 1.13023 1.31288 1.45246 0.85512 0.77257 0.79556 0.79404 1.17900 1.21334 1.16515 1.75012 1.10064 1.17783 1.15259 1.78055 0.96472 1.21113 1.14551 0.74375 0.88834 0.89096 0.91783 0.91376 0.91360 0.91919 0.90771 0.89803 0.91580 0.92179 0.87611 0.84099 0.75072 0.94845 0.92095 0.92450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.83 19.25 74.32 1.43 -1.40 16 2 C -0.22 -3.18 13.34 31.13 0.42 -2.77 16 3 C -0.02 -0.20 5.70 28.79 0.16 -0.04 16 4 C -0.11 -1.01 5.17 30.59 0.16 -0.85 16 5 C -0.12 -1.13 5.21 30.60 0.16 -0.97 16 6 C -0.11 -0.99 5.21 30.59 0.16 -0.83 16 7 C -0.13 -1.89 5.34 30.59 0.16 -1.72 16 8 C 0.11 1.75 6.46 86.38 0.56 2.31 16 9 N -0.29 -8.63 3.44 -347.73 -1.20 -9.83 16 10 C -0.05 -1.55 11.49 83.49 0.96 -0.59 16 11 C -0.01 -0.58 6.44 41.60 0.27 -0.31 16 12 C 0.07 3.25 4.62 29.10 0.13 3.39 16 13 C -0.52 -31.73 9.64 25.60 0.25 -31.48 16 14 H 0.02 1.13 7.98 -2.91 -0.02 1.11 16 15 C 0.00 0.03 5.47 84.65 0.46 0.50 16 16 N -0.96 -62.10 13.96 21.45 0.30 -61.80 16 17 Si 0.96 43.83 27.47 68.60 1.88 45.72 16 18 H -0.25 -10.69 7.11 99.48 0.71 -9.98 16 19 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 20 H -0.24 -10.09 6.54 99.48 0.65 -9.44 16 21 N -0.32 -15.59 12.40 -48.59 -0.60 -16.19 16 22 N -0.12 -5.02 12.92 37.02 0.48 -4.55 16 23 H 0.24 1.39 7.80 -4.42 -0.03 1.36 16 24 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 25 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 28 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.06 1.19 8.12 -2.38 -0.02 1.17 16 34 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.14 1.23 8.07 -2.38 -0.02 1.21 16 36 H 0.23 4.83 8.06 -2.91 -0.02 4.80 16 37 H 0.03 1.62 7.20 -2.39 -0.02 1.61 16 38 H 0.06 2.56 7.55 -2.39 -0.02 2.54 16 39 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 Total: -1.00 -83.34 338.80 7.09 -76.25 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: 0.94 Total: 5.16 kcal Atomic # 6 Polarization: -40.05 SS G_CDS: 5.28 Total: -34.77 kcal Atomic # 7 Polarization: -91.35 SS G_CDS: -1.02 Total: -92.37 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.88 Total: 45.72 kcal Total: -83.34 7.09 -76.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900643149.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.842 kcal (2) G-P(sol) polarization free energy of solvation -83.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds