Wall clock time and date at job start Mon Mar 30 2020 06:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 110.33084 * 2 1 4 4 C 1.54799 * 110.31172 * 237.59110 * 2 1 3 5 5 C 1.54507 * 103.91036 * 217.11945 * 4 2 1 6 6 H 1.09003 * 110.50928 * 118.81679 * 5 4 2 7 7 N 1.46506 * 110.50985 * 241.38480 * 5 4 2 8 8 C 1.39675 * 119.99827 * 202.82324 * 7 5 4 9 9 C 1.38909 * 120.07843 * 359.72442 * 8 7 5 10 10 C 1.38098 * 119.92379 * 179.77115 * 9 8 7 11 11 C 1.38282 * 120.07766 * 0.50681 * 10 9 8 12 12 C 1.50702 * 119.92750 * 179.76773 * 11 10 9 13 13 C 1.50701 * 109.46956 * 269.97869 * 12 11 10 14 14 H 1.07993 * 120.00517 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99563 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00244 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99862 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46942 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47102 * 120.00075 * 17 15 13 20 20 H 1.48493 * 109.47259 * 240.00190 * 17 15 13 21 21 C 1.38290 * 120.14765 * 359.74672 * 11 10 9 22 22 C 1.38100 * 120.07606 * 0.02562 * 21 11 10 23 23 C 1.54477 * 104.18979 * 0.10093 * 5 4 2 24 24 O 1.44431 * 104.80191 * 23.90897 * 23 5 4 25 25 H 1.09002 * 109.47353 * 299.20684 * 1 2 3 26 26 H 1.08999 * 109.47213 * 59.20853 * 1 2 3 27 27 H 1.09006 * 109.47136 * 179.20718 * 1 2 3 28 28 H 1.08997 * 110.55508 * 98.53733 * 4 2 1 29 29 H 1.08995 * 110.60777 * 335.72754 * 4 2 1 30 30 H 0.97005 * 119.99811 * 23.10049 * 7 5 4 31 31 H 1.08002 * 120.03229 * 0.02562 * 9 8 7 32 32 H 1.08001 * 119.96359 * 180.25108 * 10 9 8 33 33 H 1.08998 * 109.46885 * 29.98083 * 12 11 10 34 34 H 1.09000 * 109.46771 * 149.97828 * 12 11 10 35 35 H 0.97002 * 119.99925 * 179.97438 * 16 15 13 36 36 H 1.08004 * 119.96085 * 179.97438 * 21 11 10 37 37 H 1.07996 * 120.04178 * 179.97438 * 22 21 11 38 38 H 1.09001 * 110.37373 * 142.73796 * 23 5 4 39 39 H 1.08998 * 110.37491 * 264.97278 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0673 -0.7781 -1.2256 5 6 3.3177 -1.5064 -0.6842 6 1 3.1979 -2.5864 -0.7703 7 7 4.5182 -1.0658 -1.3991 8 6 5.6496 -1.8840 -1.4346 9 6 5.6404 -3.1133 -0.7878 10 6 6.7592 -3.9218 -0.8290 11 6 7.8914 -3.5044 -1.5042 12 6 9.1122 -4.3872 -1.5426 13 6 10.0009 -4.0667 -0.3684 14 1 9.7110 -3.3002 0.3349 15 6 11.1842 -4.7521 -0.1922 16 7 11.5376 -5.6852 -1.0490 17 14 12.2862 -4.3544 1.2628 18 1 11.6672 -3.2736 2.0716 19 1 12.4533 -5.5672 2.1033 20 1 13.6136 -3.9066 0.7706 21 6 7.9059 -2.2789 -2.1448 22 6 6.7889 -1.4674 -2.1116 23 6 3.3873 -1.0863 0.8008 24 8 2.0327 -0.7224 1.1452 25 1 -0.3634 0.5015 0.8970 26 1 -0.3633 0.5261 -0.8828 27 1 -0.3634 -1.0276 -0.0142 28 1 2.3422 -0.0902 -2.0251 29 1 1.3283 -1.4980 -1.5771 30 1 4.5286 -0.2040 -1.8444 31 1 4.7577 -3.4381 -0.2569 32 1 6.7513 -4.8795 -0.3298 33 1 8.8066 -5.4322 -1.4924 34 1 9.6580 -4.2123 -2.4697 35 1 12.3702 -6.1672 -0.9252 36 1 8.7920 -1.9557 -2.6709 37 1 6.8009 -0.5103 -2.6117 38 1 3.7241 -1.9208 1.4158 39 1 4.0539 -0.2326 0.9228 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000903294349.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:26 Heat of formation + Delta-G solvation = -30.418407 kcal Electronic energy + Delta-G solvation = -18808.598561 eV Core-core repulsion = 15908.343371 eV Total energy + Delta-G solvation = -2900.255191 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.02821 -38.59687 -35.44275 -33.07929 -32.37531 -31.12680 -30.20039 -28.99135 -26.21822 -25.98967 -23.00414 -22.60081 -21.73009 -20.78546 -19.95777 -17.33019 -16.66424 -16.24123 -15.76601 -15.50443 -15.20251 -14.74007 -14.11634 -13.90272 -13.60212 -13.03918 -13.00966 -12.81532 -12.63455 -12.42476 -12.16860 -12.05498 -11.71120 -11.33365 -11.21675 -11.19000 -10.97286 -10.66089 -10.49874 -10.11002 -10.06237 -9.72712 -9.42504 -9.02317 -8.37604 -8.25243 -6.81206 -5.97522 -4.01879 2.10744 2.33327 3.32233 3.38398 3.39787 3.45209 3.84170 4.27736 4.39214 4.45386 4.64443 4.72027 4.90852 4.93410 5.09334 5.30767 5.32591 5.35405 5.48935 5.51598 5.53868 5.67036 5.70395 5.74601 5.81488 6.03843 6.11471 6.31184 6.39926 6.60165 6.70550 6.83913 7.29031 7.30105 7.40622 7.61378 7.80469 7.97513 7.98107 8.00796 8.41147 9.04331 9.61732 11.11011 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.038028 B = 0.003549 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.128882 B = 7888.570098 C = 8233.651628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.069 3.931 3 H 0.068 0.932 4 C -0.157 4.157 5 C 0.126 3.874 6 H 0.092 0.908 7 N -0.748 5.748 8 C 0.177 3.823 9 C -0.194 4.194 10 C -0.081 4.081 11 C -0.081 4.081 12 C 0.052 3.948 13 C -0.508 4.508 14 H 0.057 0.943 15 C 0.056 3.944 16 N -0.896 5.896 17 Si 0.893 3.107 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.080 4.080 22 C -0.191 4.191 23 C 0.028 3.972 24 O -0.372 6.372 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.394 0.606 31 H 0.109 0.891 32 H 0.116 0.884 33 H 0.025 0.975 34 H 0.025 0.975 35 H 0.260 0.740 36 H 0.117 0.883 37 H 0.108 0.892 38 H 0.095 0.905 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.690 10.839 -1.002 22.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.011 3.989 3 H 0.086 0.914 4 C -0.195 4.195 5 C 0.019 3.981 6 H 0.110 0.890 7 N -0.382 5.382 8 C 0.079 3.921 9 C -0.217 4.217 10 C -0.099 4.099 11 C -0.083 4.083 12 C 0.015 3.985 13 C -0.546 4.546 14 H 0.075 0.925 15 C -0.145 4.145 16 N -0.535 5.535 17 Si 0.721 3.279 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.099 4.099 22 C -0.213 4.213 23 C -0.050 4.050 24 O -0.291 6.291 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.228 0.772 31 H 0.127 0.873 32 H 0.134 0.866 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.070 0.930 36 H 0.135 0.865 37 H 0.126 0.874 38 H 0.114 0.886 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -19.798 10.555 -0.737 22.448 hybrid contribution 0.895 0.556 0.481 1.158 sum -18.903 11.111 -0.256 21.928 Atomic orbital electron populations 1.21810 0.93195 1.02989 1.02417 1.23020 0.95313 0.95440 0.85112 0.91427 1.23311 0.97488 1.00226 0.98514 1.22103 0.84805 1.00049 0.91123 0.88976 1.44446 1.11371 1.21202 1.61134 1.17609 0.86786 0.91031 0.96715 1.20542 0.99576 0.95065 1.06469 1.20859 0.92178 0.99066 0.97828 1.20481 0.96404 0.95757 0.95650 1.18261 0.89037 0.93598 0.97577 1.21169 1.04080 1.19834 1.09514 0.92497 1.25025 0.97844 0.95133 0.96485 1.69973 1.23451 1.23963 1.36156 0.86516 0.80489 0.78264 0.82664 1.19697 1.21006 1.21016 1.20842 0.96645 0.93820 0.98587 1.20458 0.93574 1.01026 1.06223 1.24056 0.84048 1.00795 0.96116 1.89156 1.27353 1.74585 1.38018 0.91833 0.91197 0.91687 0.89958 0.89666 0.77172 0.87321 0.86566 0.95655 0.95665 0.93007 0.86532 0.87399 0.88632 0.91673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.53 37.15 0.35 -0.67 16 2 C 0.07 0.60 3.93 -25.79 -0.10 0.50 16 3 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.16 -1.29 6.41 -24.99 -0.16 -1.45 16 5 C 0.13 1.34 3.11 -66.36 -0.21 1.13 16 6 H 0.09 1.03 6.53 -51.93 -0.34 0.70 16 7 N -0.75 -8.89 5.28 -50.65 -0.27 -9.16 16 8 C 0.18 2.77 6.65 -83.78 -0.56 2.22 16 9 C -0.19 -3.27 9.22 -39.38 -0.36 -3.63 16 10 C -0.08 -1.60 9.69 -39.62 -0.38 -1.98 16 11 C -0.08 -1.79 5.07 -104.59 -0.53 -2.32 16 12 C 0.05 1.36 5.10 -29.03 -0.15 1.21 16 13 C -0.51 -14.43 9.09 -34.44 -0.31 -14.74 16 14 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -26.80 13.29 55.43 0.74 -26.07 16 17 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 21 C -0.08 -1.58 9.69 -39.61 -0.38 -1.96 16 22 C -0.19 -3.18 9.90 -39.38 -0.39 -3.56 16 23 C 0.03 0.32 7.35 37.93 0.28 0.60 16 24 O -0.37 -4.36 11.34 -35.23 -0.40 -4.76 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 28 H 0.08 0.58 7.68 -51.93 -0.40 0.19 16 29 H 0.08 0.64 7.87 -51.93 -0.41 0.23 16 30 H 0.39 3.97 8.36 -40.82 -0.34 3.63 16 31 H 0.11 1.59 6.26 -52.49 -0.33 1.26 16 32 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 33 H 0.03 0.69 8.08 -51.93 -0.42 0.27 16 34 H 0.03 0.69 8.08 -51.93 -0.42 0.27 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.12 2.24 8.06 -52.48 -0.42 1.81 16 37 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 38 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.07 0.76 8.06 -51.93 -0.42 0.35 16 LS Contribution 322.80 15.07 4.86 4.86 Total: -1.00 -30.84 322.80 -9.09 -39.92 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -6.00 Total: 1.57 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: -3.00 Total: -23.15 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: 0.47 Total: -35.23 kcal Atomic # 8 Polarization: -4.36 SS G_CDS: -0.40 Total: -4.76 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.84 -9.09 -39.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903294349.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.506 kcal (2) G-P(sol) polarization free energy of solvation -30.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds